Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2174 ATGAGTCAACAACTGGGAGTGCTCAGCGCACTCGATCTCGCAAAAACCCAATGGTACCATTTCACTGCAATCATCATCGCCGGAATGGGCTTCTTCACCGACGCCTACGATCTCTTCTGCATCTCAATCGTCACCAAACTCCTCGGCCGAATCTATTACCACATTCCAAACTCCCCCAGACCCGGCTCCCTCCCTCCCAACATCGCCGCCGCCGTCAACGGCGTCGCCCTCTGCGGCACCCTCGCCGGCCAGCTCTTCTTCGGCTGGCTCGGCGACAAGCTCGGCCGGAAAAAAGTCTACGGCATCACCCTCATTCTCATGGTCATCTGCTCCCTCGCCTCCGGCCTCTCCTTTGGCCACTCCCCTAAAGGCGTCATCGCCACCCTCTGTTTCTTCCGATTCTGGCTCGGCTTCGGCATCGGCGGCGACTACCCTCTCTCCGCCACCATCATGTCCGAATACGCCAACAAGAAAACCCGCGGCGCCTTCATCGCCGCCGTCTTCGCAATGCAAGGCTTCGGGATTTTAGCCGGAGGAATCGTCGCCTTAATCGTCTCCGCCGCCTTCAACAACCGCTTCCCAGCGCCGCCGTACAACATCAACGCGGAGGGCTCCACCGTGCCGGAGGCCGATTACGTCTGGCGAATCGTCCTGATGTTCGGCGCGATTCCGGCCGGATTGACCTACTACTGGCGGATGAAGATGCCGGAGACGGCGAGGTACACCGCCCTGGTGGCCAAGAACGCAAAACAAGCGGCGGCCGACATGTCGAAAGTGCTACAGGTCCACCTCGAAGCCGAAGAAGAGAAGATCGCAACAACCGAATCAAATCAAAACCGTTTCGGATTATTCTCTCCGGAATTCGCGAAACGCCATGGGCTCCACCTGGTGGGGACCACCACGACGTGGTTTTTACTGGACATAGCTTTCTACAGCCAGAACCTCTTCCAGAAAGACATCTTCACGGCCATCGAATGGCTTCCGGCGGCGGCGACGATGAGCGCGTTGGAAGAATGCTTCAAAATCGCTCGAGCCCAGACGTTGATCGCCCTCTGCGGCACGGTTCCGGGCTACTGGTTCACCGTCGTCTTCATCGACTACATCGGAAGATTCTTCATCCAGGTGATGGGATTCGTGATGATGACGATCTTCATGTTTGCTCTGGCGTTTCCGTACAATCACTGGAAGGAGAAGCCGCACAGAAATGGGTTCGTGGTGATGTACTCGCTGACGTTCTTCTTCGCGAACTTCGGGCCGAACTCGACGACGTTCATAGTGCCGGCGGAGATATTTCCGGCGAGGCTGAGGTCGACGTGCCATGGGATATCTGCGGCGGCCGGGAAGGCGGGGGCGATCGTCGGGGCGTTTGGGTTTTTGTATGCGGCGCAGAGTAAGGATCCGAATCTGACGGATCCGGGTTACCCGACGGGGATCGGAGTGAAGAATGCGTTGATTGTGTTGGGATGTATAAATTTTCTGGGAGCTTTGTTTACTCTGTTGGTGCCGGAATCGAAGGGGAAGTCGTTGGAGGAGTTGACGGGGGAGAATGAAGGAGAAGGGAATGAAGGGAATAGAACCATGCCACTATATGTGTGA 1596 56.89 MSQQLGVLSALDLAKTQWYHFTAIIIAGMGFFTDAYDLFCISIVTKLLGRIYYHIPNSPRPGSLPPNIAAAVNGVALCGTLAGQLFFGWLGDKLGRKKVYGITLILMVICSLASGLSFGHSPKGVIATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAAFNNRFPAPPYNINAEGSTVPEADYVWRIVLMFGAIPAGLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVHLEAEEEKIATTESNQNRFGLFSPEFAKRHGLHLVGTTTTWFLLDIAFYSQNLFQKDIFTAIEWLPAAATMSALEECFKIARAQTLIALCGTVPGYWFTVVFIDYIGRFFIQVMGFVMMTIFMFALAFPYNHWKEKPHRNGFVVMYSLTFFFANFGPNSTTFIVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSKDPNLTDPGYPTGIGVKNALIVLGCINFLGALFTLLVPESKGKSLEELTGENEGEGNEGNRTMPLYV 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38827933 38829528 - Lag0016546.1 Lac12g2174 590771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2174 531 MobiDBLite consensus disorder prediction 509 531 - -
Lac12g2174 531 Pfam Sugar (and other) transporter 25 512 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Lac12g2174 531 CDD MFS_PhT 24 505 - -
Lac12g2174 531 NCBIfam phosphate:H+ symporter 11 515 IPR004738 GO:0005315(InterPro)|GO:0006817(InterPro)|GO:0016020(InterPro)
Lac12g2174 531 SUPERFAMILY MFS general substrate transporter 11 512 IPR036259 -
Lac12g2174 531 FunFam Inorganic phosphate transporter 1-6 19 527 - -
Lac12g2174 531 Gene3D MFS general substrate transporter like domains 269 528 IPR036259 -
Lac12g2174 531 Gene3D MFS general substrate transporter like domains 19 266 IPR036259 -
Lac12g2174 531 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 506 IPR020846 GO:0022857(InterPro)
Lac12g2174 531 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 9 511 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2618 Lac-Chr11:42181563 Lac12g2174 Lac-Chr12:38827933 1.10E-239 dispersed
Lac12g2174 Lac-Chr12:38827933 Lac7g0591 Lac-Chr7:4729829 2.40E-255 dispersed
Lac11g2617 Lac-Chr11:42174581 Lac12g2174 Lac-Chr12:38827933 1.90E-239 wgd
Lac12g2174 Lac-Chr12:38827933 Lac7g0590 Lac-Chr7:4710468 1.40E-231 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2174 K08176 - csv:101212412 931.398