Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2185 ATGAATTCTTCATTCTTTCACTTCCAAAACTCCGATTTCTCGCCGGAATCTTCCCTCGGCTCCTTCGAATCTCTCCGATGGGAAGGTTTTCAAATCAACGACAACTCTCTGCCCTTCAACGAGAATGATTCCGGCGAAATGCTCCTCCACAGCTTAATCTCCGAGGCCGCCGTGTATCCGCCGGAGAATTCTCTCCGGCAGACTCCGATCAAAGACGAGGAGGTCGATTCGCTCGGAGAAGAAGACTCCCACAAGCAGAAATCCTACAGAGGAGTCCGCCAGCGGCCGTGGGGGAAATTCGCGGCGGAGATCCGGGACTCGACCCGCCACGGCGTTCGGGTCTGGCTCGGGACATTCGACAGCGCCGAGGAGGCCGCTTTGGCCTACGATCAAGCCGCTTTCTCGATGCGGGGCTCGGCGGCCGTTCTCAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTCAAGGAGATGGAGATGATCAACTCCGCCGTCGGCGGCGGCGACGGCGACGGCGACGGCGGATCTCCGGTGGTGGCTTTGAAGAGAAAACACTCGATGAGGAAGAAGTTCACGAGGAGAAAGAGCAAAGAGAGAGATGGAAATAGGAAAATGGAGAGTAATGTGGTTGTTTTGGAAGATCTTGGCCCTGATTATTTGGAAGAACTTTTGGAGTCGTCGGAGAATCTCCGGCCGTGGTGA 699 55.22 MNSSFFHFQNSDFSPESSLGSFESLRWEGFQINDNSLPFNENDSGEMLLHSLISEAAVYPPENSLRQTPIKDEEVDSLGEEDSHKQKSYRGVRQRPWGKFAAEIRDSTRHGVRVWLGTFDSAEEAALAYDQAAFSMRGSAAVLNFPVERVQESLKEMEMINSAVGGGDGDGDGGSPVVALKRKHSMRKKFTRRKSKERDGNRKMESNVVVLEDLGPDYLEELLESSENLRPW 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38963186 38963884 - Lag0016557.1 Lac12g2185 590782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2185 232 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g2185 232 SMART rav1_2 88 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g2185 232 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g2185 232 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g2185 232 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g2185 232 CDD AP2 87 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g2185 232 PANTHER DNA-BINDING DOMAIN 63 189 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Lac12g2185 232 MobiDBLite consensus disorder prediction 183 206 - -
Lac12g2185 232 FunFam Ethylene-responsive transcription factor 2 87 148 - -
Lac12g2185 232 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677(InterPro)
Lac12g2185 232 Pfam AP2 domain 88 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2185 Lac-Chr12:38963186 Lac4g2184 Lac-Chr4:41482719 1.70E-35 dispersed
Lac12g2185 Lac-Chr12:38963186 Lac12g2186 Lac-Chr12:38992751 5.60E-23 tandem
Lac11g2619 Lac-Chr11:42197822 Lac12g2185 Lac-Chr12:38963186 3.80E-40 wgd
Lac12g2185 Lac-Chr12:38963186 Lac7g0597 Lac-Chr7:4768871 5.90E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23095 PF00847 AP2 1.10E-15 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2185 K14516 - csv:101206564 371.318