Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2225 ATGCCTCGGGACGGGCATGTAGTGCCGGTGGATCCACAGGCGGCGCTGACTGTCAGAAGAAGAAGCAGCCTTCTCGGAATTGGATTCTGCTGGATTGTACGGGCCAAGGGACCGTCCTCGATGTCGACAAGTATGCTATTATGCATCGAGTTCAAATTCATGCTCGAGACCTTCGAATCTCGACCCTTTGCTTCTTATCCCTCCACGATTTTGGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTGCTTAGAGATCCAACAGATGAAAATGTCATCCCTGTGGTCGAGGAGCTTCAGAGGCGACTGCCTCCTTCTAATATCTTCCAGCTTCAAATTCAAGGAGACGGAAAGAGTATCAGGTGGGCAAACTGATGGTGAAGCTGATGAAGATGAATCACCATTTGAATTCCGTGCGCTCGAGGTAGCTTTGGAAGCTATATGTAGTTTTCTTGCTGCTCGGACAACTGAACTGGAGACTGCTGCTTATCCTGCTTGGATGAGCTTACTGCCAAGATTTATGGATACCTATGCAATTGCATTTCATTTTGAGTCACCATACTCCTGTATGGCTATTAGTAGCCGCAACTTGGACAGAGTTCGTAAACTAAAGAGTGCAATGACCAGGTTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTCGAACAATTACTGGACGATGACGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAGTTCATCTTCTCCTGTAAGTGTTTCTGGTCCTGCCATTTGGTTTCCTGCCTCTCCTACCATAGGTTCAAAGATCTCAAGAGCAAGCAGAGCGAGTATTGCAACTGTACGTGGGGATGAGAATGACATCGAGGAGCTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGTACATTGAACAAATTAACTACACTGCGAGAATATATCGATGACACAGAAGATTATATCAATATTCAGCTTGACAATCATCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGTTCTGGAACTGTTTGTTTGTCAATCTATTCTTTGGTGGGTGCAATATTTGGCATGAACATTCCATACACTTGGAATGACGATCATGGATACATGTTTAAATGGGTTGTCATTGTTACTGGAGTAGCTTGCGCGCTGCTGTTCATCGCAACGATTTACTATGCTCGCTACAAAGGTTTGGTGGGGTCTTGA 1233 44.77 MPRDGHVVPVDPQAALTVRRRSSLLGIGFCWIVRAKGPSSMSTSMLLCIEFKFMLETFESRPFASYPSTILGRERAIVLNLEHIKAIITAEEVCLEIQQMKMSSLWSRSFRGDCLLLISSSFKFKETERVSGGQTDGEADEDESPFEFRALEVALEAICSFLAARTTELETAAYPAWMSLLPRFMDTYAIAFHFESPYSCMAISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMSSSSPVSVSGPAIWFPASPTIGSKISRASRASIATVRGDENDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVGAIFGMNIPYTWNDDHGYMFKWVVIVTGVACALLFIATIYYARYKGLVGS 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39424886 39430081 - Lag0016597.1 Lac12g2225 590822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2225 410 Pfam Magnesium transporter MRS2-like 290 337 - -
Lac12g2225 410 Pfam Magnesium transporter MRS2-like 68 252 - -
Lac12g2225 410 CDD Mrs2_Mfm1p-like 61 407 IPR039204 -
Lac12g2225 410 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 346 397 IPR045863 -
Lac12g2225 410 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 62 407 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Lac12g2225 410 Gene3D - 54 96 - -
Lac12g2225 410 Coils Coil 211 238 - -
Lac12g2225 410 Gene3D Magnesium transport protein CorA, transmembrane region 118 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2225 K16075 - - csv:101203841 466.463
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2225 Lac-Chr12:39424886 Lac6g0802 Lac-Chr6:6877473 2.80E-49 dispersed
Lac5g2479 Lac-Chr5:43360329 Lac12g2225 Lac-Chr12:39424886 3.00E-31 transposed
Lac6g1629 Lac-Chr6:23427561 Lac12g2225 Lac-Chr12:39424886 1.30E-16 transposed
Lac11g2650 Lac-Chr11:42485541 Lac12g2225 Lac-Chr12:39424886 3.60E-110 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac11g0588 . 1 425 MRS2 Gene Family AT1G16010 85.6 6.2e-196 681.0
Lac6g0802 . 3 379 MRS2 Gene Family AT1G16010 52.4 1.3e-108 391.0
Lac11g2650 . 1 370 MRS2 Gene Family AT5G64560 69.3 3.5e-131 465.7
Lac12g2225 . 1 383 MRS2 Gene Family AT5G64560 63.5 7.1e-116 414.8
Lac12g0153 . 14 495 MRS2 Gene Family AT3G19640 62.9 1.6e-152 537.0
Lac5g2480 . 60 271 MRS2 Gene Family AT3G58970 64.6 1.5e-64 244.6
Lac5g2479 . 1 162 MRS2 Gene Family AT3G58970 69.3 1.4e-54 211.5
Lac6g0802 . 5 379 MRS2 Gene Family AT2G03620 68.1 2.0e-135 479.9
Lac11g0588 . 13 427 MRS2 Gene Family AT2G03620 54.6 5.5e-109 392.1
Lac11g2650 . 1 332 MRS2 Gene Family AT5G09690 65.4 1.9e-109 393.3
Lac12g2225 . 1 345 MRS2 Gene Family AT5G09690 58.5 2.5e-90 329.7
Lac11g0588 . 40 383 MRS2 Gene Family AT5G09690 50.6 1.0e-78 291.2
Lac11g2650 . 34 292 MRS2 Gene Family AT5G09720 60.5 3.6e-75 279.3
Lac12g2225 . 66 305 MRS2 Gene Family AT5G09720 56.1 1.9e-55 213.8
Lac11g0588 . 1 425 MRS2 Gene Family AT1G80900 84.7 1.2e-191 666.8
Lac6g0802 . 1 379 MRS2 Gene Family AT1G80900 53.2 2.7e-106 383.3
Lac10g2035 . 2 284 MRS2 Gene Family AT5G22830 85.2 6.5e-132 468.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58