Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2225 ATGCCTCGGGACGGGCATGTAGTGCCGGTGGATCCACAGGCGGCGCTGACTGTCAGAAGAAGAAGCAGCCTTCTCGGAATTGGATTCTGCTGGATTGTACGGGCCAAGGGACCGTCCTCGATGTCGACAAGTATGCTATTATGCATCGAGTTCAAATTCATGCTCGAGACCTTCGAATCTCGACCCTTTGCTTCTTATCCCTCCACGATTTTGGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGAAGAGGTTTGCTTAGAGATCCAACAGATGAAAATGTCATCCCTGTGGTCGAGGAGCTTCAGAGGCGACTGCCTCCTTCTAATATCTTCCAGCTTCAAATTCAAGGAGACGGAAAGAGTATCAGGTGGGCAAACTGATGGTGAAGCTGATGAAGATGAATCACCATTTGAATTCCGTGCGCTCGAGGTAGCTTTGGAAGCTATATGTAGTTTTCTTGCTGCTCGGACAACTGAACTGGAGACTGCTGCTTATCCTGCTTGGATGAGCTTACTGCCAAGATTTATGGATACCTATGCAATTGCATTTCATTTTGAGTCACCATACTCCTGTATGGCTATTAGTAGCCGCAACTTGGACAGAGTTCGTAAACTAAAGAGTGCAATGACCAGGTTGACTGCGAGGGTTCAAAAGGTGAGAGATGAGCTCGAACAATTACTGGACGATGACGATGATATGGCAGACCTTTACTTGTCAAGAAAGATGAGTTCATCTTCTCCTGTAAGTGTTTCTGGTCCTGCCATTTGGTTTCCTGCCTCTCCTACCATAGGTTCAAAGATCTCAAGAGCAAGCAGAGCGAGTATTGCAACTGTACGTGGGGATGAGAATGACATCGAGGAGCTTGAAATGTTACTGGAGGCTTACTTTATGCAGATTGATGGTACATTGAACAAATTAACTACACTGCGAGAATATATCGATGACACAGAAGATTATATCAATATTCAGCTTGACAATCATCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGTTCTGGAACTGTTTGTTTGTCAATCTATTCTTTGGTGGGTGCAATATTTGGCATGAACATTCCATACACTTGGAATGACGATCATGGATACATGTTTAAATGGGTTGTCATTGTTACTGGAGTAGCTTGCGCGCTGCTGTTCATCGCAACGATTTACTATGCTCGCTACAAAGGTTTGGTGGGGTCTTGA 1233 44.77 MPRDGHVVPVDPQAALTVRRRSSLLGIGFCWIVRAKGPSSMSTSMLLCIEFKFMLETFESRPFASYPSTILGRERAIVLNLEHIKAIITAEEVCLEIQQMKMSSLWSRSFRGDCLLLISSSFKFKETERVSGGQTDGEADEDESPFEFRALEVALEAICSFLAARTTELETAAYPAWMSLLPRFMDTYAIAFHFESPYSCMAISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMSSSSPVSVSGPAIWFPASPTIGSKISRASRASIATVRGDENDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVGAIFGMNIPYTWNDDHGYMFKWVVIVTGVACALLFIATIYYARYKGLVGS 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39424886 39430081 - Lag0016597.1 Lac12g2225 590822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2225 410 Pfam Magnesium transporter MRS2-like 290 337 - -
Lac12g2225 410 Pfam Magnesium transporter MRS2-like 68 252 - -
Lac12g2225 410 CDD Mrs2_Mfm1p-like 61 407 IPR039204 -
Lac12g2225 410 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 346 397 IPR045863 -
Lac12g2225 410 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 62 407 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Lac12g2225 410 Gene3D - 54 96 - -
Lac12g2225 410 Coils Coil 211 238 - -
Lac12g2225 410 Gene3D Magnesium transport protein CorA, transmembrane region 118 340 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2225 Lac-Chr12:39424886 Lac6g0802 Lac-Chr6:6877473 2.80E-49 dispersed
Lac5g2479 Lac-Chr5:43360329 Lac12g2225 Lac-Chr12:39424886 3.00E-31 transposed
Lac6g1629 Lac-Chr6:23427561 Lac12g2225 Lac-Chr12:39424886 1.30E-16 transposed
Lac11g2650 Lac-Chr11:42485541 Lac12g2225 Lac-Chr12:39424886 3.60E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2225 K16075 - csv:101203841 466.463