Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2230 ATGGAGCTCGGTGGTCCGCCCACCCCTCCGCCGCTCCCACCGCCGCCCACTGGCGCCACTCTCCTCGGCAAGTACCAGTTAGGCCGATTCCTCGGCCGTGGAAGCTTCGCCAAGGTGTACCAGGCTCGTTCTCTCGCCGATAACTCCGTCGTCGCCGTCAAAATCATCGACAAGAACAAAACCATCGACGCCGCAATGGAGCCCTGCATTGTACGTGAGATCGCCGTGATGCGCCGCCTGCAGCACCATCCCAACATCCTCAAAATCCACGAAGTTATGGCGACGAAGACGAAGATCTATCTGGTCGTCGATTACGCCTCCGGCGGCGAGCTCTTCGCGAAACTCCTCCGTCGTGGCCGGCTGACGGAATCCACCGCCCGTCGCTACTTTCAACAACTCGTCTCTGCTCTCCATTTCTGTCACCAAAACGGCGTCGCACATCGCGACATCAAGCCCCAAAATCTCCTCCTCGACGAAGACGGTAACCTAAAGGTCTCCGACTTCGGCCTCTCGGCGTTACCGGAGCAGATCAAAGACGGAATGCTCCACACGGCGTGCGGAACTCCGGCGTACACCGCGCCAGAGGTCGTTTCCCGACGTGGCTACGACGGCGCAAAAGCCGACGCATGGTCCTGCGGCGTCATACTGTTCGTTTTACTCTCCGGCCACCTCCCATTCAGCGACAACAATCTCGTGGCGATGTTCAAGAAGGTTTATCGACGAGAATACCAATTTCCAGATTCGATCTCGAAGCCGGCGAGGCATTTGATCTTCCAATTGCTCGATCCGAACCCCAACACAAGGATGGGCATGGAGGCTCTGATGCAGCATTCGTGGTACAAGAAATCATTGCGATCGAAGCCTCAAATCAGCAACAGGAGCTTGTTCGAATCATTGGGTAATTACAAATCTGATCTGGGTGTTTCTGGATTGAATGCTTTTGATATAATTTCAATGTCTTCTGGTTTGGATCTGTCGGGGCTGTTTGAGACGACTGATTGTAAGAAGAAGAGGTTCACGACGGGGGTGAGCTTGGAGAAAGTGGAGGAGAGAGTTACAGAGATCGGAGGGGAATTGGGTTACAGAGTGGAGAAAGGGAAGAGTGGAGCCATTGGATTGGGGAAAGGGAGGATGATTTTAGTGGTGGAGGTTTTGGAAATAACCTCTAATCTGTTGATGGTTGAAGTCAAGGTAGCTGAATCCAAGATGGAGTTTGAGAGGATGCATTGGGGGGATTTGAAAGCTAAGTTGCAGGACATTGTTGTTTCATGGCACACCAATGAGGCAATGTGA 1293 53.29 MELGGPPTPPPLPPPPTGATLLGKYQLGRFLGRGSFAKVYQARSLADNSVVAVKIIDKNKTIDAAMEPCIVREIAVMRRLQHHPNILKIHEVMATKTKIYLVVDYASGGELFAKLLRRGRLTESTARRYFQQLVSALHFCHQNGVAHRDIKPQNLLLDEDGNLKVSDFGLSALPEQIKDGMLHTACGTPAYTAPEVVSRRGYDGAKADAWSCGVILFVLLSGHLPFSDNNLVAMFKKVYRREYQFPDSISKPARHLIFQLLDPNPNTRMGMEALMQHSWYKKSLRSKPQISNRSLFESLGNYKSDLGVSGLNAFDIISMSSGLDLSGLFETTDCKKKRFTTGVSLEKVEERVTEIGGELGYRVEKGKSGAIGLGKGRMILVVEVLEITSNLLMVEVKVAESKMEFERMHWGDLKAKLQDIVVSWHTNEAM 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39495079 39496371 - Lag0016602.1 Lac12g2230 590827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2230 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g2230 430 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524(InterPro)
Lac12g2230 430 Pfam Protein kinase domain 25 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2230 430 SMART serkin_6 25 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2230 430 SUPERFAMILY Protein kinase-like (PK-like) 22 288 IPR011009 -
Lac12g2230 430 FunFam Non-specific serine/threonine protein kinase 16 304 - -
Lac12g2230 430 Pfam NAF domain 311 365 IPR004041 GO:0007165(InterPro)
Lac12g2230 430 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 20 401 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lac12g2230 430 Gene3D Transferase(Phosphotransferase) domain 1 17 307 - -
Lac12g2230 430 FunFam Non-specific serine/threonine protein kinase 18 110 - -
Lac12g2230 430 CDD CIPK_C 312 414 - -
Lac12g2230 430 Gene3D Kinase associated domain 1, KA1 308 423 - -
Lac12g2230 430 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165(InterPro)
Lac12g2230 430 ProSiteProfiles Protein kinase domain profile. 25 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2230 Lac-Chr12:39495079 Lac1g1796 Lac-Chr1:39560526 4.90E-105 dispersed
Lac12g2230 Lac-Chr12:39495079 Lac7g0679 Lac-Chr7:5439043 1.40E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85823 PF00069 Pkinase 1.60E-72 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2230 K12761 - csv:101215156 804.668