Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2249 ATGAGTGCCGGCACGGCGACGTTCCGGTCTATACTCGACAAACCCCTCAACCAGTTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGATTGTCGGAAATACCTAAAGGAAAAAGGAATGCGGCGGCCCTCGTGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCATTGCTTGAACCTTGTGACGATTCCGGCGCCGGTGCTCTCAGGAGGGTTGTCGTTTCGCCTCGGGTGAATTCAAATCAAGGTGGTGATTCACCCAAAGAACCGAGTGATGATGCTCAGGTTACGTTGTCAGTTGATGAATCTGCGTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACCGGCCGAACCAGACAACAAGGTCACCAGTCCCAGAGATCAATGCGATACAAATGGAGTGGATGGCCAAATGACAATTTTCTATTGTGGCAAGGTGAATGTGTATGATGGAGTTCCACCAGATAAGGCATGGGCAATCATGCATCTAGCAGCTAGTCCAATTCATTTCCCACAGAATCGCCCCTTGGGTGGAACTGCTGCATGTCAGTCTCCACCATGTCTTTTGCAGACTGCCAATGAGAGAGATGACTTTTTTCCTCCTAGTGCTACTACCTATCGAAATATGCATACAGAGAAGATGGTTGAGTACCCTCAGCAACAGCATGTAAAAGGAACCAGCACTCGAGATTCTGATGTTGAGGGTCAGGCGAGTCGGAAAGTTTCATTACAGAGATATCTTGAAAAGCGAAAAGACAGGGGAAGGTTAAAGAACAAGAAAAATACAGGATTGTCTTCTTCTAGCCTGGAGGGGTATATGAACCATCAAATGAGGACGCACATATCCAATAAGAATTTAGGTCAGATTGTGACAAGCTCTTTATCCCCAACTGGAGTAGCAAAAGCCTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGCATGTTTTCCTGTCGACCTTAATGTCAAAGGAGCTACATTTCTGCAGATATCCAGGAGTGCTGAGTTCGACAACGTGGTTGATGGCATGCTACTTCAGAAATCATCCTTGTGA 1077 46.8 MSAGTATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGAGALRRVVVSPRVNSNQGGDSPKEPSDDAQVTLSVDESAYSNVETAKSTPEDPPAEPDNKVTSPRDQCDTNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHFPQNRPLGGTAACQSPPCLLQTANERDDFFPPSATTYRNMHTEKMVEYPQQQHVKGTSTRDSDVEGQASRKVSLQRYLEKRKDRGRLKNKKNTGLSSSSLEGYMNHQMRTHISNKNLGQIVTSSLSPTGVAKAFVGTADNQPKLACFPVDLNVKGATFLQISRSAEFDNVVDGMLLQKSSL 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39620934 39625617 - Lag0016621.1 Lac12g2249 590846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2249 358 MobiDBLite consensus disorder prediction 225 249 - -
Lac12g2249 358 Pfam Jas motif 245 261 IPR018467 -
Lac12g2249 358 ProSiteProfiles Tify domain profile. 139 174 IPR010399 -
Lac12g2249 358 SMART tify_2 139 174 IPR010399 -
Lac12g2249 358 Pfam tify domain 145 173 IPR010399 -
Lac12g2249 358 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 261 IPR040390 GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER)
Lac12g2249 358 MobiDBLite consensus disorder prediction 110 139 - -
Lac12g2249 358 MobiDBLite consensus disorder prediction 257 276 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23102 PF06200 tify 3.20E-15 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2249 - - - 0.0