Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2249 ATGAGTGCCGGCACGGCGACGTTCCGGTCTATACTCGACAAACCCCTCAACCAGTTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGATTGTCGGAAATACCTAAAGGAAAAAGGAATGCGGCGGCCCTCGTGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCATTGCTTGAACCTTGTGACGATTCCGGCGCCGGTGCTCTCAGGAGGGTTGTCGTTTCGCCTCGGGTGAATTCAAATCAAGGTGGTGATTCACCCAAAGAACCGAGTGATGATGCTCAGGTTACGTTGTCAGTTGATGAATCTGCGTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACCGGCCGAACCAGACAACAAGGTCACCAGTCCCAGAGATCAATGCGATACAAATGGAGTGGATGGCCAAATGACAATTTTCTATTGTGGCAAGGTGAATGTGTATGATGGAGTTCCACCAGATAAGGCATGGGCAATCATGCATCTAGCAGCTAGTCCAATTCATTTCCCACAGAATCGCCCCTTGGGTGGAACTGCTGCATGTCAGTCTCCACCATGTCTTTTGCAGACTGCCAATGAGAGAGATGACTTTTTTCCTCCTAGTGCTACTACCTATCGAAATATGCATACAGAGAAGATGGTTGAGTACCCTCAGCAACAGCATGTAAAAGGAACCAGCACTCGAGATTCTGATGTTGAGGGTCAGGCGAGTCGGAAAGTTTCATTACAGAGATATCTTGAAAAGCGAAAAGACAGGGGAAGGTTAAAGAACAAGAAAAATACAGGATTGTCTTCTTCTAGCCTGGAGGGGTATATGAACCATCAAATGAGGACGCACATATCCAATAAGAATTTAGGTCAGATTGTGACAAGCTCTTTATCCCCAACTGGAGTAGCAAAAGCCTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGCATGTTTTCCTGTCGACCTTAATGTCAAAGGAGCTACATTTCTGCAGATATCCAGGAGTGCTGAGTTCGACAACGTGGTTGATGGCATGCTACTTCAGAAATCATCCTTGTGA 1077 46.8 MSAGTATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGAGALRRVVVSPRVNSNQGGDSPKEPSDDAQVTLSVDESAYSNVETAKSTPEDPPAEPDNKVTSPRDQCDTNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHFPQNRPLGGTAACQSPPCLLQTANERDDFFPPSATTYRNMHTEKMVEYPQQQHVKGTSTRDSDVEGQASRKVSLQRYLEKRKDRGRLKNKKNTGLSSSSLEGYMNHQMRTHISNKNLGQIVTSSLSPTGVAKAFVGTADNQPKLACFPVDLNVKGATFLQISRSAEFDNVVDGMLLQKSSL 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39620934 39625617 - Lag0016621.1 Lac12g2249 590846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2249 358 MobiDBLite consensus disorder prediction 225 249 - -
Lac12g2249 358 Pfam Jas motif 245 261 IPR018467 -
Lac12g2249 358 ProSiteProfiles Tify domain profile. 139 174 IPR010399 -
Lac12g2249 358 SMART tify_2 139 174 IPR010399 -
Lac12g2249 358 Pfam tify domain 145 173 IPR010399 -
Lac12g2249 358 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 261 IPR040390 GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER)
Lac12g2249 358 MobiDBLite consensus disorder prediction 110 139 - -
Lac12g2249 358 MobiDBLite consensus disorder prediction 257 276 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2249 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac4g3088 . 1 230 Tify Gene Family AT3G21175 57.4 5.4e-60 228.4
Lac6g0994 . 47 266 Tify Gene Family AT4G24470 59.1 4.3e-66 249.2
Lac12g0090 . 89 267 Tify Gene Family AT4G24470 60.2 1.1e-48 191.4
Lac4g3088 . 1 292 Tify Gene Family AT1G51600 60.0 2.2e-88 323.2
Lac12g0090 . 86 287 Tify Gene Family AT1G51600 57.5 5.8e-52 202.2
Lac6g0994 . 428 603 Tify Gene Family AT1G51600 59.0 8.3e-51 198.4
Lac6g0994 . 47 266 Tify Gene Family AT4G24470 59.1 4.3e-66 249.2
Lac12g0090 . 89 267 Tify Gene Family AT4G24470 60.2 1.1e-48 191.4
Lac4g3088 . 1 292 Tify Gene Family AT1G51600 60.0 2.2e-88 323.2
Lac12g0090 . 86 287 Tify Gene Family AT1G51600 57.5 5.8e-52 202.2
Lac6g0994 . 428 603 Tify Gene Family AT1G51600 59.0 8.3e-51 198.4
Lac4g3088 . 1 230 Tify Gene Family AT3G21175 57.4 5.4e-60 228.4
Lac12g2249 . 1 181 Tify Gene Family AT4G14713 53.1 4.1e-47 185.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003252 2 5 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 4 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23102 PF06200 tify 3.20E-15 No_clan Lac TF