Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2277 ATGGAGCTTTCTGCATCACCCCGCCTCCTAACTTCTCCCACTTCGCTGATGCTACTGAAACCCAAGGTTGGGTTTAGGGTTTCTCAGATTCCTTCGTCACCATTCCGTCTTCACCGCTCTGTTTTCTCAGTTAAACTCAATGATAGAATGGAACTGAATAGGGCAGTATGTTGTGCTTCTTCGTCTGAAGGAAACGGCTCACCGGTGGTCACTTCTTCAAACGCTTCAGGGCCTCGAGTGGGCGAAGTGAAAAGGGTCACTAAGGAAACAAATGTATCCGTCAAGATAAACCTGGATGGCTCTGGGATTGCGGATAGTAATACTGGGATTCCATTTCTTGATCATATGTTAGATCAACTTGCTTCACACGGGGTTTTCGATGTGCACGTACGGGCGACAGGAGATATCCACATTGATGATCACCACACTAATGAAGATGTTGCCCTTGCAATTGGATCGGCTTTGCTGAATGCACTTGGTGATCGGAAAGGAATCTACCGGTTTGGTGATTTTTCAGCTCCTCTTGATGAAGCACTTATACATGTCTCACTAGATTTATCTGGCCGGCCACATTTAAGTTATGATCTAGAGATACCTACTCAGAGAGTTGGAACATATGACACCCAGTTGGTGGAGCATTTCTTTCAGTCTCTGGTGAATACTTCTGGCATGACTCTTCATATTCGACAGCTTGCCGGAAAGAATTCTCATCATATTATTGAAGCAACCTTCAAAGCATTTGCTAGGGCCCTTAGACAAGCAACAGAGTATGACCCACGCCGTCTTGGCACCGTACCTAGAATGGAAGTTCGTGCTCTTCGGTCTCTTCCCCATTGCAAAAGAAATTTTGAGTTGGACGCCTTAAAAGTGGTGAAAGTCCTCATCGGTGAATCAGAAGATCTTTCGGGGATGAAGATCTTCACGGATGAAATCAGAGGCATCGTCAACCGCTCGTTTTCCATGGAAATCAGCCATTGTAGTCGCCTTTTGAACACAACCGTGCACTGTGTTGCGAAGAGAGCTGTGATCCTTCCTCTGTCTCCCGCGAGTTCTTCGTCTTCTGGATTAGGTAGCAGAGAATCCCTTTTGCGGGGAACAGAGCATGCGGCTCCGCCCGCTTCTACAGCAGGCATGGCCGGAGGTAACAACACGAGCAAGTCGTCTCAGAAGCCTTCCTCTTCTTCCGCCGCCCCTTCTAACCGGAAATCCCGCTGGGAGTCCTCCTCCAACAATCCTCCCTCCGATCCCAAATCCGATTCTAAATCTTCCAAACCCCACAATCCTTCCTCCAAATCTGCACCTAGTCCCAATTCCACTCACCCCAAGCATTCTGCCGACAAGGCTGTCAATCCAACTCCGGCCTCGGCTCCACTCCCTTCTCCTGGAGTTCCACTCCCCTTTCCCGACCCCTCGGCTCTTGGCCCACCGCCTCCGCCGTCTTATGGATTCCACATGCTTGAGCGCCGCACGATTGTTCTTGCGGATGGTAGTGTACGGTCGTACTTCGCTCTCCCTCTCGACTATCAAGATTTTACTCCGCCTGCAAGGCCCATGGATCTCGCTGCTCGGTTTTTACCGATGGGGTCCGGGGTTCCTAGCCGTGAATATGGTGGATTTGATCATCGGTTTCCCCCTGGTGGCCCCATGAGTCCTGATGATTTTCGGGGTGTTCGGGAAGAACAATTTGCGCGTTCCAGGCCTCAAGATCACTGGAATTCTCGAGGCACAGATGAACGTGGTGGTCCTGGAGAATTGTCGATGAAAAGAAAGTTCAATGACGACAATGAGAAGGATAGGAAGGATGAGAAAGACGAATTGTCTAGGCGGCAGCAGCAATTCTTGCATAACGGGAATGCAAATGGATTTCTTACGGGTTCCGGCGAACGGCGGGGGGAATTTCTGGCGGGAACGAGTGATCCATATGGTCGAACAGAGGATATGAGGTTCTCGAAGTACATGCGAGTTGGTGGTAGTTATGAAAATGAAGGTTTAAGGCTAGGTAGTGGTAGCAATGCAGCTCCTAAATATTTAGAAGTTGACCAGGATGCATTGAGAAAGGCATTTCTTCACTTTGTGAAGACTATCAATGAAAATGCGAATCAGAAGAAGAATTATCTGGAGGATGGGAAGCATGGGCGTCTTCATTGTCTTGCTTGCGCAAGGTCCTCTAGAGATTTTCCAGATATGCATGGCCTTATTATGCACACATACAACTCTGATAGTGCTGACTTGCAAGTGGATCATTTGGGTTTACACAAAGCTCTTTGTGTATTAATGGGGTGGAACTACTCAAAGCCTCCTGATAATTCAAGAGGATACCAGTTTCTATCTGCTGATGAAGCAGCAGCTAACCAGGAGGATCTGATTTTGTGGCCTCCTCTAGTTATCATCCATAATACAATTACTGGAAAGGGTAAAGATGGGCGCATGGAGGGTTTGGGAAACAAAGCAATGGATAGTAAAATTAGAGACCTTGGGTTTGGGGGTGGGAAGTCCAAGTCTTTGTATGGAAGGGATGGTCATTTGGGCACAACTTTGATCAAGTTTTCGGGTGATCAGTCTGGCCTCAATGAAGCCAAGAGACTGGCTGAATTTTTTGAGAAGGACAATCGTGGACGTATGGCTTGGGCTCGTGTGCGACCTGCTGCATTTAGCAGGGATGATGATAAAAATCCAAACCTTGTGAAGGTGGATGAAAAGAATGGAGAGAGGAAAAGGATATTTTATGGCTATCTTGCAACTGCAGCTGATATGGACAAAGTTGATTTTGATACAAGGAAGAAGGTGGCCATAGAGAGCTGTAGGGATTTCAAATCGTCCCGGTAG 2826 47.77 MELSASPRLLTSPTSLMLLKPKVGFRVSQIPSSPFRLHRSVFSVKLNDRMELNRAVCCASSSEGNGSPVVTSSNASGPRVGEVKRVTKETNVSVKINLDGSGIADSNTGIPFLDHMLDQLASHGVFDVHVRATGDIHIDDHHTNEDVALAIGSALLNALGDRKGIYRFGDFSAPLDEALIHVSLDLSGRPHLSYDLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRLGTVPRMEVRALRSLPHCKRNFELDALKVVKVLIGESEDLSGMKIFTDEIRGIVNRSFSMEISHCSRLLNTTVHCVAKRAVILPLSPASSSSSGLGSRESLLRGTEHAAPPASTAGMAGGNNTSKSSQKPSSSSAAPSNRKSRWESSSNNPPSDPKSDSKSSKPHNPSSKSAPSPNSTHPKHSADKAVNPTPASAPLPSPGVPLPFPDPSALGPPPPPSYGFHMLERRTIVLADGSVRSYFALPLDYQDFTPPARPMDLAARFLPMGSGVPSREYGGFDHRFPPGGPMSPDDFRGVREEQFARSRPQDHWNSRGTDERGGPGELSMKRKFNDDNEKDRKDEKDELSRRQQQFLHNGNANGFLTGSGERRGEFLAGTSDPYGRTEDMRFSKYMRVGGSYENEGLRLGSGSNAAPKYLEVDQDALRKAFLHFVKTINENANQKKNYLEDGKHGRLHCLACARSSRDFPDMHGLIMHTYNSDSADLQVDHLGLHKALCVLMGWNYSKPPDNSRGYQFLSADEAAANQEDLILWPPLVIIHNTITGKGKDGRMEGLGNKAMDSKIRDLGFGGGKSKSLYGRDGHLGTTLIKFSGDQSGLNEAKRLAEFFEKDNRGRMAWARVRPAAFSRDDDKNPNLVKVDEKNGERKRIFYGYLATAADMDKVDFDTRKKVAIESCRDFKSSR 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39888333 39902519 - Lag0016649.1 Lac12g2277 590874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2277 941 Gene3D Imidazole glycerol phosphate dehydratase; domain 1 167 270 IPR038494 -
Lac12g2277 941 PANTHER RNA RECOGNITION MOTIF XS DOMAIN PROTEIN-RELATED 671 937 - -
Lac12g2277 941 MobiDBLite consensus disorder prediction 377 418 - -
Lac12g2277 941 FunFam Imidazoleglycerol-phosphate dehydratase HisB 71 166 - -
Lac12g2277 941 Hamap Imidazoleglycerol-phosphate dehydratase [hisB]. 79 272 IPR000807 GO:0000105(InterPro)|GO:0004424(InterPro)
Lac12g2277 941 MobiDBLite consensus disorder prediction 454 479 - -
Lac12g2277 941 ProSitePatterns Imidazoleglycerol-phosphate dehydratase signature 2. 233 245 IPR020565 GO:0000105(InterPro)|GO:0004424(InterPro)
Lac12g2277 941 MobiDBLite consensus disorder prediction 347 479 - -
Lac12g2277 941 MobiDBLite consensus disorder prediction 536 555 - -
Lac12g2277 941 Pfam XS domain 786 919 IPR005380 GO:0031047(InterPro)
Lac12g2277 941 MobiDBLite consensus disorder prediction 425 445 - -
Lac12g2277 941 MobiDBLite consensus disorder prediction 561 610 - -
Lac12g2277 941 Pfam Imidazoleglycerol-phosphate dehydratase 108 251 IPR000807 GO:0000105(InterPro)|GO:0004424(InterPro)
Lac12g2277 941 ProSitePatterns Imidazoleglycerol-phosphate dehydratase signature 1. 138 151 IPR020565 GO:0000105(InterPro)|GO:0004424(InterPro)
Lac12g2277 941 CDD IGPD 81 266 IPR000807 GO:0000105(InterPro)|GO:0004424(InterPro)
Lac12g2277 941 MobiDBLite consensus disorder prediction 561 639 - -
Lac12g2277 941 Gene3D XS domain 782 941 IPR038588 -
Lac12g2277 941 FunFam Imidazoleglycerol-phosphate dehydratase 167 271 - -
Lac12g2277 941 SUPERFAMILY Ribosomal protein S5 domain 2-like 79 163 IPR020568 -
Lac12g2277 941 Gene3D Imidazole glycerol phosphate dehydratase; domain 1 67 166 IPR038494 -
Lac12g2277 941 SUPERFAMILY Ribosomal protein S5 domain 2-like 164 256 IPR020568 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2277 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2277 Lac-Chr12:39888333 Lac9g2680 Lac-Chr9:45122771 5.80E-34 dispersed
Lac12g2277 Lac-Chr12:39888333 Lac3g2251 Lac-Chr3:30136924 4.00E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g500 . . . . . Bpe14g01186 . . Cmo08g01119 Cmo17g00220 . . . . . . . . . . . . . . Cla06g00586 Cam06g0624 Cec06g0627 Cco06g0632 Clacu06g0611 Cmu06g0604 Cre06g1372 . . Cone7ag0251 Cone4ag0245 . . . . . Blo07g00218 Bda11g00576 Bda13g00127 . Bpe13g00607 Bma02g00850 Bma06g01555 Sed04g1906 . . Cma08g01141 Cma17g00233 Car08g01025 Car17g00212 Cpe12g00196 Cpe17g00148 Bhi12g01706 Tan06g2520 Cmetu01g2519 Lac12g2277 Hepe03g0201 . Lcy13g0285 . . . . . . . Lsi09g01318 . . Cme01g01567
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004279 3 1 1 2 2 1 2 1 1 1 1 1 3 1 1 3 1 2 3 1 1 1 1 1 2 1 1 1 1 1 43