Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2278 ATGGAGGACGGTGTGAGATCTGGGGGTCCGTCGGGGGTTTTGGTGAAGACCAGGAACTCGTCTGGTTGCTTAATTGTGAGAAAAAAAGATGAGGGATTGGGAGGCGCCGGTTCTTCGGGCTCACGCTTGATTAATGCGAAGAAGAAGGAGAAGAAGAGGCCTAGGGTGGTCTTGAGTGATTCTGGGTCCAGTGATGAGGTATTGCTGCCCCATCGGAGACGGGTTGGTCCTGAAACCATTCGGGTTTGTAATGGTTTGAATTCTTTTGAAAAGGATGTCATGGACGAGAGTGGAAGTGTGAGAAAGAAGGATAGGCTGCAGTACGTTAAGCGAAATGATGATGGTTTGATCAACAGGATGGATGTGGATGGTTTACGGAGAAATATGGACAACTTAGATGTGTTTGAGTTCAACGAGTATGATGAAATCGATGGTGAGACTAGGCGGAGGAAGCATTTTAATGGCAGTGGAGAGAGACGGTTTCTTGGTTCCATGAACCTGCCTCAAGGTGGCATCGAGAGGGAATTTGGAACCACTTCTAGCAGGCATGCTGTGGTGGACAAGAGGAAGAATTTGTATGTAGAACAAACCAATAGCTTAGATCGGGACAGACCTCCCCGAAAGATTAATTTTGACACAGATAATGACGGAGCTCATCTTCCAATACCCTTGTTGAGAGATAAATTTAGGGGTCATTCCGATAAAGCAATCAGGGTTCAGGGGAAAAATGGAGTTTTGAAGGTCATGGTAAACAAGAAGAAGAATGTGAGTGGAGCTCCCGATATGTATGATCATCGCCCATTAGAAGAAAGTAGAAAGAGTTTAAGGACTGAAGATACTTTGAAGAGGAAGGTGTTAGTTACACCTTCAGTTTACCCAGAAACTAAGTCTCATGTGAAACAGGATCCCTTTTCTAAGCCAGAGAAGGACCATGCAGATTTTCAAACATCAGCATCAACAAAAAATGGAAAGGGTTGCAGCTGGGATTCAGGTGATAGCAGTGTATCATTGAAGCCTAAAAAAAAGGTTGAAGCTCACAAATCTGCTAAGAGAGCAAGCTCTGAAGTTGAAAAAATTCCACATGAAGAGACTCCTCCAAGCACAGCGAAGGAAGGAAAGGTAAAACGAGGCAGTGGAACAGAGAAACAAAAGCTACGTGAAAGGATCAGGGGAATGCTCCTTAGTGCTGGCTGGAAAATCGATTACAGACCTAGAAGGAATAGAGATTATTTGGATGCTGTCTATGTTAATCCTACCGGAACAGCTTATTGGTCAATTATTAAGGCTTACGATGCCCTTCAAAAGCAATTAAATGAAGAAGGAGCAGAAGTTAAACCTAGTGTTGATGCTTCCTTTACGCCAATATCAGATGATATTCTCAGTCAATTAACCAGGAAAACTCGAAAGAAAATTGAGAAAGAATGGAAAAGTAAGCGGAGAGATGATAGTGACAGTGAAAATGCCAAAGAAGCAAGTGCACCGAGATATGCTGGTACTAAAAACGACATTGATAGCATGGACAGTGATAGCAATGAAGAAAAACTAAGCTCCTTCATAAAGCAGGGTGGAAAATCTTTTAAAAATAAATTGAACGAGAATGGGTGTCCAAGTGTCAACTCAAAAGGTCAAAGTTCTAGTAAGTATTCACGTGATGCCACTGTAAAACCTTCTTCTGGATTCAATTCACGCATTTTGCATGGAAGAAAAGGTAGAAAGCTTGGATTGTTAGTTCGTGGCTCCAGTAGGGGATTAGATTCAGAGAACGATGGTTTTGTTCCATATACTGGTAAAAGGACTCTGCTTTCCTGGCTTATCGACTCTGGAACTGTGCAGTTGAGCCAAAAGGTCCGTTACATGAACCGCAGACAGACCCGAGTGATGCTGGAGGGGTGGATTACCAGAGACGGCATTCATTGCGGTTGCTGCAGCAAAATCCTCACTGTTTCGAAGTTTGAGATACATGCTGGAAGCAAACTACGCCAACCATTTCAAAACATCTTTTTGGAGTCTGGAGTTTCTCTTCTGCAATGCCAGATAGATGCATGGAATAGACAGGAGGAGTCTAAACGTCTCAGTTTCCACACAGTTGAAATTGACGGCGATGATCCGAATGATGATACTTGCGGTATCTGTGGAGATGGTGGAGACCTGATCTGTTGTGATGGGTGTCCATCAACTTTTCATCAGAGTTGTTTAGAAATTCAGATTCCTCCAGGTGATTGGCACTGCCCAAATTGTACTTGCAAGTATTGTGGAGTTGCCACCGTTGATGTTTCTCATGGAGACAATATGGTTTCTGAGATATCAAGTTGCATGCTATGCGAGAAAAAATTTCATGAATCCTGCATTCCAGAGACGGATGCTCATTCCAATGGTTCAGTCACTTCTTTTTGTGGCAAAACTTGCAGAGAGCTTTTTGAGAATTTGCAGAAGTTTCTTGGGTTGAAACACGAATTAGATGCAGGATACTCATGGTCTCTTATCCGTAGAACAAGTGAAGATTCGGATGCATCTCTTCGTGGACATTCTCAAAGGATTGAAAGCAACTCTAAACTGGCTGTTGCATTAACAGTTATGGATGAATGCTTTTTGCCTATTGTTGACAGGAGGAGTGGGATAAATCTAATTCATAATGTTCTTTATAACTGTGGATCAAACTTTTATAGGTTGAATTATAGTGGCTTCTACACTGCTATTTTGGAAAGGGGTGATGAAATCATCTCTGCAGCAACAATCAGGTTTCATGGGACTAAGTTAGCTGAGATGCCATTCATTGGAACCCGCCATATATATAGACGTCAAGGAATGTGCCGCCGGCTTTTTTGCGCAATTGAATCTGCTCTCCGCATGCTTAAGGTTGAGAAACTGATTATACCAGCAATCGCTGAGCTCATGCATACATGGAATGTGATTTTTGGCTTTAGCCCTTTGGAGCAATCACTCAAACAAGAAATGAGATTGATGAATATGTTGGTGTTCCCTGGAACAGATATGTTACAAAAGTTGTTAATCGAAGATACAGTTGTCGAGGAAAATGCTACCACTGGCTCAGGTGCAAAACAAACAGATTGTAGAAGCACAGAGTTTAGCAGTCCTAAGATGGATACAGAGACCTCATCTGGACATGAACCTCAAAGTTGTGATGACACTGAACAACGTCACTCCAGGGAGACAACAAATGAAGCAGCTGTCACTAACCCGAATCCTGAATCCATGCCTGATTCTCCAAATGATACTTCTGTGGCGAATAGTTCTCTGGATGCACCTCGTGAAGTTAACACGTCTTGTTTTCCAATGGAAACCGTAAATTCAGATTCTGATTCTGGTGACAAATTAGCTAAATGTTCCTCCGACAGGAAACGTTCATCTCCATCTGATGCAAGGTGTGACTCTCTTCCAACCAAAAATAGGCCGGGAATTCAACATGGTATAGAAGACCATTCGCAGTCCTCGCAGTCCACTTCCCAATGTATGGCAGCTGATAACTCTTCAGACAGTTTTCTTGAACCTAAGGTTACAGTTTCAGATGAAGGAATAATTTGTTCCAACTCTCATGCTGGGCACAAGTTGGCTGAATCTGGTTCTGAAAACAACATACCCGTAATGGATTCTCCTGAAGATGATAAGTCTTCGAATAAGATTAATGGTCATGATTTTCGTGAAGACAATGCCCATGCTAATGCTGAAAATTTTGCCAATGGCATTGTCAGTGAAAATCCACCCGTCTCTACTGCTGGTTTGACTGGCACTAATGGACGCCCCTTTGAGATTATATCTGATTGCAAAAATGCAATTGCTCATGGGAAAGAAGCAATTTCTGATGGAATGTGCGGCAGTGAAAGTTCTGCACAGTCATGTGGGGCAAAAGTCAGAGGTGATTCACAGGAAGAGAGAGCTGAATCTGAGTTTGGCAATTTAGATCATAATCCAACTTCGGTGATTGTTAACACGATTTTTTCAGCCCTGGAGTTCACAGAGGTGCCCTTGACGGAAGTAGCATGGTTCAATTCACTGCCCATCTCTTCTGAAACTGCTGCTCTGAAACATGAACTCATTCATTATGCTGGCTGGCCTGGAACTCAGATTTCACAGTATATGGTCGGAACCTGCTTTGGTTAA 4119 42.68 MEDGVRSGGPSGVLVKTRNSSGCLIVRKKDEGLGGAGSSGSRLINAKKKEKKRPRVVLSDSGSSDEVLLPHRRRVGPETIRVCNGLNSFEKDVMDESGSVRKKDRLQYVKRNDDGLINRMDVDGLRRNMDNLDVFEFNEYDEIDGETRRRKHFNGSGERRFLGSMNLPQGGIEREFGTTSSRHAVVDKRKNLYVEQTNSLDRDRPPRKINFDTDNDGAHLPIPLLRDKFRGHSDKAIRVQGKNGVLKVMVNKKKNVSGAPDMYDHRPLEESRKSLRTEDTLKRKVLVTPSVYPETKSHVKQDPFSKPEKDHADFQTSASTKNGKGCSWDSGDSSVSLKPKKKVEAHKSAKRASSEVEKIPHEETPPSTAKEGKVKRGSGTEKQKLRERIRGMLLSAGWKIDYRPRRNRDYLDAVYVNPTGTAYWSIIKAYDALQKQLNEEGAEVKPSVDASFTPISDDILSQLTRKTRKKIEKEWKSKRRDDSDSENAKEASAPRYAGTKNDIDSMDSDSNEEKLSSFIKQGGKSFKNKLNENGCPSVNSKGQSSSKYSRDATVKPSSGFNSRILHGRKGRKLGLLVRGSSRGLDSENDGFVPYTGKRTLLSWLIDSGTVQLSQKVRYMNRRQTRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIFLESGVSLLQCQIDAWNRQEESKRLSFHTVEIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLEIQIPPGDWHCPNCTCKYCGVATVDVSHGDNMVSEISSCMLCEKKFHESCIPETDAHSNGSVTSFCGKTCRELFENLQKFLGLKHELDAGYSWSLIRRTSEDSDASLRGHSQRIESNSKLAVALTVMDECFLPIVDRRSGINLIHNVLYNCGSNFYRLNYSGFYTAILERGDEIISAATIRFHGTKLAEMPFIGTRHIYRRQGMCRRLFCAIESALRMLKVEKLIIPAIAELMHTWNVIFGFSPLEQSLKQEMRLMNMLVFPGTDMLQKLLIEDTVVEENATTGSGAKQTDCRSTEFSSPKMDTETSSGHEPQSCDDTEQRHSRETTNEAAVTNPNPESMPDSPNDTSVANSSLDAPREVNTSCFPMETVNSDSDSGDKLAKCSSDRKRSSPSDARCDSLPTKNRPGIQHGIEDHSQSSQSTSQCMAADNSSDSFLEPKVTVSDEGIICSNSHAGHKLAESGSENNIPVMDSPEDDKSSNKINGHDFREDNAHANAENFANGIVSENPPVSTAGLTGTNGRPFEIISDCKNAIAHGKEAISDGMCGSESSAQSCGAKVRGDSQEERAESEFGNLDHNPTSVIVNTIFSALEFTEVPLTEVAWFNSLPISSETAALKHELIHYAGWPGTQISQYMVGTCFG 1372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39906929 39914800 - Lag0016650.1 Lac12g2278 590875

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2278 1372 MobiDBLite consensus disorder prediction 472 563 - -
Lac12g2278 1372 MobiDBLite consensus disorder prediction 472 489 - -
Lac12g2278 1372 MobiDBLite consensus disorder prediction 1012 1163 - -
Lac12g2278 1372 SMART PHD_3 707 747 IPR001965 -
Lac12g2278 1372 SMART PHD_3 748 803 IPR001965 -
Lac12g2278 1372 MobiDBLite consensus disorder prediction 292 382 - -
Lac12g2278 1372 Pfam Tify domain binding domain 630 680 IPR032308 -
Lac12g2278 1372 MobiDBLite consensus disorder prediction 1191 1217 - -
Lac12g2278 1372 SUPERFAMILY FYVE/PHD zinc finger 696 752 IPR011011 -
Lac12g2278 1372 MobiDBLite consensus disorder prediction 28 61 - -
Lac12g2278 1372 MobiDBLite consensus disorder prediction 299 315 - -
Lac12g2278 1372 MobiDBLite consensus disorder prediction 258 276 - -
Lac12g2278 1372 MobiDBLite consensus disorder prediction 1042 1058 - -
Lac12g2278 1372 MobiDBLite consensus disorder prediction 1111 1126 - -
Lac12g2278 1372 Pfam PHD-finger 708 746 IPR019787 -
Lac12g2278 1372 ProSitePatterns Zinc finger PHD-type signature. 708 746 IPR019786 -
Lac12g2278 1372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 806 IPR013083 -
Lac12g2278 1372 MobiDBLite consensus disorder prediction 316 334 - -
Lac12g2278 1372 CDD PHD2_CHD_II 708 746 - -
Lac12g2278 1372 MobiDBLite consensus disorder prediction 1143 1163 - -
Lac12g2278 1372 MobiDBLite consensus disorder prediction 335 382 - -
Lac12g2278 1372 ProSiteProfiles Zinc finger PHD-type profile. 705 749 IPR019787 -
Lac12g2278 1372 Pfam Domain of unknown function (DUF7028) 373 436 IPR054292 -
Lac12g2278 1372 MobiDBLite consensus disorder prediction 1202 1217 - -
Lac12g2278 1372 MobiDBLite consensus disorder prediction 1059 1110 - -
Lac12g2278 1372 MobiDBLite consensus disorder prediction 515 560 - -
Lac12g2278 1372 MobiDBLite consensus disorder prediction 256 276 - -
Lac12g2278 1372 MobiDBLite consensus disorder prediction 1012 1041 - -
Lac12g2278 1372 PANTHER PHD FINGER PROTEIN 12 333 1142 - GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2278 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2278 Lac-Chr12:39906929 Lac2g1204 Lac-Chr2:9746387 9.30E-49 dispersed
Lac2g1205 Lac-Chr2:9759520 Lac12g2278 Lac-Chr12:39906929 2.20E-42 transposed
Lac9g2383 Lac-Chr9:42996651 Lac12g2278 Lac-Chr12:39906929 6.80E-89 transposed
Lac9g2636 Lac-Chr9:44802238 Lac12g2278 Lac-Chr12:39906929 1.10E-48 transposed
Lac12g2278 Lac-Chr12:39906929 Lac4g2273 Lac-Chr4:42382029 5.30E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
Vvi7g89 . . . Bda10g00577 . . . . Cmo08g00335 Cmo17g01163 . . . . . Cpe17g00858 . . . . . . . . Cla09g00660 Cam09g0695 Cec09g0686 Cco09g0684 Clacu09g0704 . Cre09g0673 Cone17ag0558 Cone20ag0858 . . Lsi02g02282 Csa07g01711 . Cme01g02078 . . . . Bpe10g00402 . . . Sed09g1123 . . Cma08g00340 Cma17g01186 Car08g00305 Car17g01118 . Cpe12g01032 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . . . Chy01g01576 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23105 PF16135 TDBD 6.50E-22 No_clan Lac TR