Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac12g2279 | ATGAATGGTGCTACAACAACAACCTCTGAACCAGACAACTCTGAATATGTCGAAGTTGATCCCACAGGAAGATATGGGAGATACAATGAAGTTCTTGGCAAAGGAGCGTCCAAGACAGTTTACAGAGCCTTCGATGAATACGATGGCATTGAAGTGGCGTGGAATCAAGTGAAGCTTTGCGATTTTCTTCAAACTCCTGAAGATCTCGAACGGCTGTACAGAGAAATCCATTTGTTGAAGACTTTAAAACACAACAACATAATGAAATTCTATTCTTCTTGGGTTGACACTGCCAATAGAAACATTAACTTCGTTACAGAGATGTTCACTTCTGGGACTCTTAGACAATACAGGCTGAAGCACAAGCGAGTCAACATCAGAGCTGTGAAGCATTGGTGCAGACAGATTTTAAGAGGTCTTCTCTATCTTCACAGCCATGACCCGCCTGTAATCCACAGAGACCTTAAATGTGACAATATTTTTGTCAATGGGAATCAAGGAGAAGTCAAAATTGGTGATCTTGGCCTTGCTGCTATTCTTCGTAAATCCTATGTAGCTCGATGTGTTGGAACGCCAGAGTTTATGGCTCCAGAGATTTATGAAGAGGAGTATAATGAATTGGTTGATATATATTCTTTTGGAATGTGCATTTTGGAGATGGTTACTTTTGAATATCCTTACAGTGAATGCAACCATCCTGCTCAGATTTACAAGAAAGTTATCTCTGGGAAGAAACCAGATGCTTTGTATAAGGTGAAGGATCTCGAGGTTCGGTATTTCGTCGAGAAATGCTTGGCGACTGTATCGACTAGGCTTTCTGCTAGGGAGCTTTTGAATGATCCTTTTCTTCAAATTGATGGTTGTGATTCCTTGCTGAGGCCAATAGACTACTATTCAGAATATGATGAAGTGAATAGTTCTCTTGTTAGAGGGCCTCTTTATGGACTTTCTCATGGTCCTTTGGCTAATGGTTATGTGAATTATTTTGGTCATGAGGCTGGGAATGCTTTGGATTACTGTCCGATTGATAACGAAGCGAGCGAAATCGACCTTTTCTCTTGTCAAGAGGATGAGCATTTGGCAGATGTTGATATCACTATTAAAGGGAGAAGAAGAGGCGACGACGATATATTTCTACGACTTCGAATTGCAGATAAAGAAGGTCGGATTCGAAACATCTACTTCCCCTTTGATTTAGAGAATGACAGTGCTTTGAGTGTTGCAAATGAGATGGTTTCAGAGCTTGACATAACTGATCAAGATGTGAAGAAGATTGCTGATATGATAGATGGGGAAATTGCTACATTGGTGCCAGAATGGAAGAGGGGAACAAGCTTAGAGGAAACTCCAGATTGCACTGATTCTAATGTTTGTCACAATTGTGCTTTAAATGGTTCTCTTTTGGATTACGTTTCGCCGCATAATCCCACGACGAAAAACCTGCACATTCTTCGGTGTTCCGAAGAGCATGGATGTGCTTCCATCCATGGCCGTTTTGAAGAGATCACATACCAAGTTGAAGGGTCAGATCAGTTCAATGGAGATGAAAACTTGCATAGGACACCGGAGAATTCGAGTGATATCCATTACGCTGATATTTGGGCGCAGCGAGATGGACCAGAGATTGTTTCACATGAATCTGGAGAAGTCAGTTGCGATGAAGCGAACGAAACATCGGTGCAGCCGAAACTCGAGAAGGAAGGAAGAACTGTTAATATGGACAATCATCAAAGGGAATTCCAAACAAGAAACTCTAGCTCATCGAATCCTTCGATGTCGTTCGCCGACGATCACGAGAACGAAATTCGACAAGAACTCAGATGGCTCAAGGCTAAATACCAACTGCAGTTGAGGGAGCTAAGGGATCAACAGTTAGGAGTCAAAACCAAATCCCTCAGCTTGCACACCAATCCCAACCTCGTCGAGACCGACATCGGAGCTTCGGTATCTCTGCTCTCACCAATCTTCAATGAAGCAAAAACCAAGGATCTCCTAGCATCTCTCTCCTTTGGCAAGAACATCACTTCACATTCCCCCCTAGTCGCCAATAACATTTCGGAAAACCAGACCTTTCAAGACGACAACATCGTCAACGAGTCGAGTAGTCCCGAGCTGCTGATCACTGCCAAGAGTTTCTATACAGGAGCATTGTTTCCACATTCTCTCCAAAGAGCAACCTCCCTTCCTGTTGATGCCATAGATTTTTAG | 2208 | 42.71 | MNGATTTTSEPDNSEYVEVDPTGRYGRYNEVLGKGASKTVYRAFDEYDGIEVAWNQVKLCDFLQTPEDLERLYREIHLLKTLKHNNIMKFYSSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSYVARCVGTPEFMAPEIYEEEYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVISGKKPDALYKVKDLEVRYFVEKCLATVSTRLSARELLNDPFLQIDGCDSLLRPIDYYSEYDEVNSSLVRGPLYGLSHGPLANGYVNYFGHEAGNALDYCPIDNEASEIDLFSCQEDEHLADVDITIKGRRRGDDDIFLRLRIADKEGRIRNIYFPFDLENDSALSVANEMVSELDITDQDVKKIADMIDGEIATLVPEWKRGTSLEETPDCTDSNVCHNCALNGSLLDYVSPHNPTTKNLHILRCSEEHGCASIHGRFEEITYQVEGSDQFNGDENLHRTPENSSDIHYADIWAQRDGPEIVSHESGEVSCDEANETSVQPKLEKEGRTVNMDNHQREFQTRNSSSSNPSMSFADDHENEIRQELRWLKAKYQLQLRELRDQQLGVKTKSLSLHTNPNLVETDIGASVSLLSPIFNEAKTKDLLASLSFGKNITSHSPLVANNISENQTFQDDNIVNESSSPELLITAKSFYTGALFPHSLQRATSLPVDAIDF | 735 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 39919600 | 39922362 | - | Lag0016651.1 | Lac12g2279 | 590876 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac12g2279 | 735 | CDD | STKc_WNK | 24 | 283 | - | - | |
Lac12g2279 | 735 | Gene3D | Phosphorylase Kinase; domain 1 | 10 | 107 | - | - | |
Lac12g2279 | 735 | SMART | serkin_6 | 26 | 283 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac12g2279 | 735 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 150 | 162 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac12g2279 | 735 | FunFam | probable serine/threonine-protein kinase WNK9 | 109 | 288 | - | - | |
Lac12g2279 | 735 | Gene3D | - | 376 | 467 | - | - | |
Lac12g2279 | 735 | Pfam | Protein kinase domain | 29 | 283 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac12g2279 | 735 | MobiDBLite | consensus disorder prediction | 575 | 594 | - | - | |
Lac12g2279 | 735 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Lac12g2279 | 735 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Lac12g2279 | 735 | ProSiteProfiles | Protein kinase domain profile. | 26 | 283 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac12g2279 | 735 | MobiDBLite | consensus disorder prediction | 577 | 594 | - | - | |
Lac12g2279 | 735 | Pfam | Oxidative-stress-responsive kinase 1 C-terminal domain | 378 | 433 | IPR024678 | GO:0004674(InterPro)|GO:0005524(InterPro) | |
Lac12g2279 | 735 | FunFam | Probable serine/threonine-protein kinase WNK1 | 11 | 107 | - | - | |
Lac12g2279 | 735 | PANTHER | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED | 12 | 623 | IPR050588 | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER) | |
Lac12g2279 | 735 | Gene3D | Transferase(Phosphotransferase) domain 1 | 109 | 288 | - | - | |
Lac12g2279 | 735 | SUPERFAMILY | Protein kinase-like (PK-like) | 29 | 284 | IPR011009 | - | |
Lac12g2279 | 735 | Coils | Coil | 603 | 623 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0496 | Lac-Chr10:3798994 | Lac12g2279 | Lac-Chr12:39919600 | 2.90E-132 | dispersed | |
Lac12g2279 | Lac-Chr12:39919600 | Lac3g2189 | Lac-Chr3:28432246 | 1.00E-187 | dispersed | |
Lac11g1940 | Lac-Chr11:34886319 | Lac12g2279 | Lac-Chr12:39919600 | 2.40E-124 | transposed | |
Lac1g1784 | Lac-Chr1:39358698 | Lac12g2279 | Lac-Chr12:39919600 | 2.00E-125 | transposed | |
Lac7g0117 | Lac-Chr7:935475 | Lac12g2279 | Lac-Chr12:39919600 | 2.30E-130 | transposed | |
Lac9g2333 | Lac-Chr9:42656667 | Lac12g2279 | Lac-Chr12:39919600 | 1.50E-135 | transposed | |
Lac12g2279 | Lac-Chr12:39919600 | Lac6g2741 | Lac-Chr6:45131437 | 1.20E-217 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85824 | PF00069 | Pkinase | 4.10E-49 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac12g2279 | K08867 | - | csv:101210511 | 1303.12 |