Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2279 ATGAATGGTGCTACAACAACAACCTCTGAACCAGACAACTCTGAATATGTCGAAGTTGATCCCACAGGAAGATATGGGAGATACAATGAAGTTCTTGGCAAAGGAGCGTCCAAGACAGTTTACAGAGCCTTCGATGAATACGATGGCATTGAAGTGGCGTGGAATCAAGTGAAGCTTTGCGATTTTCTTCAAACTCCTGAAGATCTCGAACGGCTGTACAGAGAAATCCATTTGTTGAAGACTTTAAAACACAACAACATAATGAAATTCTATTCTTCTTGGGTTGACACTGCCAATAGAAACATTAACTTCGTTACAGAGATGTTCACTTCTGGGACTCTTAGACAATACAGGCTGAAGCACAAGCGAGTCAACATCAGAGCTGTGAAGCATTGGTGCAGACAGATTTTAAGAGGTCTTCTCTATCTTCACAGCCATGACCCGCCTGTAATCCACAGAGACCTTAAATGTGACAATATTTTTGTCAATGGGAATCAAGGAGAAGTCAAAATTGGTGATCTTGGCCTTGCTGCTATTCTTCGTAAATCCTATGTAGCTCGATGTGTTGGAACGCCAGAGTTTATGGCTCCAGAGATTTATGAAGAGGAGTATAATGAATTGGTTGATATATATTCTTTTGGAATGTGCATTTTGGAGATGGTTACTTTTGAATATCCTTACAGTGAATGCAACCATCCTGCTCAGATTTACAAGAAAGTTATCTCTGGGAAGAAACCAGATGCTTTGTATAAGGTGAAGGATCTCGAGGTTCGGTATTTCGTCGAGAAATGCTTGGCGACTGTATCGACTAGGCTTTCTGCTAGGGAGCTTTTGAATGATCCTTTTCTTCAAATTGATGGTTGTGATTCCTTGCTGAGGCCAATAGACTACTATTCAGAATATGATGAAGTGAATAGTTCTCTTGTTAGAGGGCCTCTTTATGGACTTTCTCATGGTCCTTTGGCTAATGGTTATGTGAATTATTTTGGTCATGAGGCTGGGAATGCTTTGGATTACTGTCCGATTGATAACGAAGCGAGCGAAATCGACCTTTTCTCTTGTCAAGAGGATGAGCATTTGGCAGATGTTGATATCACTATTAAAGGGAGAAGAAGAGGCGACGACGATATATTTCTACGACTTCGAATTGCAGATAAAGAAGGTCGGATTCGAAACATCTACTTCCCCTTTGATTTAGAGAATGACAGTGCTTTGAGTGTTGCAAATGAGATGGTTTCAGAGCTTGACATAACTGATCAAGATGTGAAGAAGATTGCTGATATGATAGATGGGGAAATTGCTACATTGGTGCCAGAATGGAAGAGGGGAACAAGCTTAGAGGAAACTCCAGATTGCACTGATTCTAATGTTTGTCACAATTGTGCTTTAAATGGTTCTCTTTTGGATTACGTTTCGCCGCATAATCCCACGACGAAAAACCTGCACATTCTTCGGTGTTCCGAAGAGCATGGATGTGCTTCCATCCATGGCCGTTTTGAAGAGATCACATACCAAGTTGAAGGGTCAGATCAGTTCAATGGAGATGAAAACTTGCATAGGACACCGGAGAATTCGAGTGATATCCATTACGCTGATATTTGGGCGCAGCGAGATGGACCAGAGATTGTTTCACATGAATCTGGAGAAGTCAGTTGCGATGAAGCGAACGAAACATCGGTGCAGCCGAAACTCGAGAAGGAAGGAAGAACTGTTAATATGGACAATCATCAAAGGGAATTCCAAACAAGAAACTCTAGCTCATCGAATCCTTCGATGTCGTTCGCCGACGATCACGAGAACGAAATTCGACAAGAACTCAGATGGCTCAAGGCTAAATACCAACTGCAGTTGAGGGAGCTAAGGGATCAACAGTTAGGAGTCAAAACCAAATCCCTCAGCTTGCACACCAATCCCAACCTCGTCGAGACCGACATCGGAGCTTCGGTATCTCTGCTCTCACCAATCTTCAATGAAGCAAAAACCAAGGATCTCCTAGCATCTCTCTCCTTTGGCAAGAACATCACTTCACATTCCCCCCTAGTCGCCAATAACATTTCGGAAAACCAGACCTTTCAAGACGACAACATCGTCAACGAGTCGAGTAGTCCCGAGCTGCTGATCACTGCCAAGAGTTTCTATACAGGAGCATTGTTTCCACATTCTCTCCAAAGAGCAACCTCCCTTCCTGTTGATGCCATAGATTTTTAG 2208 42.71 MNGATTTTSEPDNSEYVEVDPTGRYGRYNEVLGKGASKTVYRAFDEYDGIEVAWNQVKLCDFLQTPEDLERLYREIHLLKTLKHNNIMKFYSSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSYVARCVGTPEFMAPEIYEEEYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVISGKKPDALYKVKDLEVRYFVEKCLATVSTRLSARELLNDPFLQIDGCDSLLRPIDYYSEYDEVNSSLVRGPLYGLSHGPLANGYVNYFGHEAGNALDYCPIDNEASEIDLFSCQEDEHLADVDITIKGRRRGDDDIFLRLRIADKEGRIRNIYFPFDLENDSALSVANEMVSELDITDQDVKKIADMIDGEIATLVPEWKRGTSLEETPDCTDSNVCHNCALNGSLLDYVSPHNPTTKNLHILRCSEEHGCASIHGRFEEITYQVEGSDQFNGDENLHRTPENSSDIHYADIWAQRDGPEIVSHESGEVSCDEANETSVQPKLEKEGRTVNMDNHQREFQTRNSSSSNPSMSFADDHENEIRQELRWLKAKYQLQLRELRDQQLGVKTKSLSLHTNPNLVETDIGASVSLLSPIFNEAKTKDLLASLSFGKNITSHSPLVANNISENQTFQDDNIVNESSSPELLITAKSFYTGALFPHSLQRATSLPVDAIDF 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 39919600 39922362 - Lag0016651.1 Lac12g2279 590876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2279 735 CDD STKc_WNK 24 283 - -
Lac12g2279 735 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Lac12g2279 735 SMART serkin_6 26 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2279 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g2279 735 FunFam probable serine/threonine-protein kinase WNK9 109 288 - -
Lac12g2279 735 Gene3D - 376 467 - -
Lac12g2279 735 Pfam Protein kinase domain 29 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2279 735 MobiDBLite consensus disorder prediction 575 594 - -
Lac12g2279 735 MobiDBLite consensus disorder prediction 1 15 - -
Lac12g2279 735 MobiDBLite consensus disorder prediction 1 20 - -
Lac12g2279 735 ProSiteProfiles Protein kinase domain profile. 26 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2279 735 MobiDBLite consensus disorder prediction 577 594 - -
Lac12g2279 735 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 378 433 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Lac12g2279 735 FunFam Probable serine/threonine-protein kinase WNK1 11 107 - -
Lac12g2279 735 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 623 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Lac12g2279 735 Gene3D Transferase(Phosphotransferase) domain 1 109 288 - -
Lac12g2279 735 SUPERFAMILY Protein kinase-like (PK-like) 29 284 IPR011009 -
Lac12g2279 735 Coils Coil 603 623 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0496 Lac-Chr10:3798994 Lac12g2279 Lac-Chr12:39919600 2.90E-132 dispersed
Lac12g2279 Lac-Chr12:39919600 Lac3g2189 Lac-Chr3:28432246 1.00E-187 dispersed
Lac11g1940 Lac-Chr11:34886319 Lac12g2279 Lac-Chr12:39919600 2.40E-124 transposed
Lac1g1784 Lac-Chr1:39358698 Lac12g2279 Lac-Chr12:39919600 2.00E-125 transposed
Lac7g0117 Lac-Chr7:935475 Lac12g2279 Lac-Chr12:39919600 2.30E-130 transposed
Lac9g2333 Lac-Chr9:42656667 Lac12g2279 Lac-Chr12:39919600 1.50E-135 transposed
Lac12g2279 Lac-Chr12:39919600 Lac6g2741 Lac-Chr6:45131437 1.20E-217 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85824 PF00069 Pkinase 4.10E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2279 K08867 - csv:101210511 1303.12