Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2287 ATGCCAAATAATATGGCAAAGCTTAAACCCTCCAAACTCATCCTCTTCTTCCTCCCACTCCTCACTTCCCTTCTCTCCTCCGCCGCCGCCGTCCACCGCCACCCTCTCGACCCGCTCTCCCCGACGGAGTTCGAACTCATCCGATCAATCATCACAAACGCCACCCCCAACCCCTCTACCAACCTCACCTTCCATTACGTTGCCCTCGCCGACCCCAACAAGCAATCCCTCCTCTCATGGCTCTCAAATCCCAAAGCCCCGCCGCCGCCCCGCCGCGCCACCGCCATCGTCCGTTTCAACAAAGCCAACCACGAGATCCTCATCGACCTAACCCAAAACTCCATCCTCTTGAACCGGGTCCACTCCGGCCCAGGCTTCGCGACGTTCACATCCGAGGAGCAGTTCGCCGCCTCCGCGCTGCCGCTGTCCCACCCGCCGTTCGCGGCGGCAATGAAAAAACGAGGCCTGAAAATGGAAGAGGTGGTTTGCGGGTGTTTCAGCGTGGGGTGGTTCGGGGAAAAGAAGATGCAAAAGAGAATCGTGAGGGTTCAGTGCTTTTATTTGGATGGGAGTGTGAATTTGTACATGAGGCCTGTGGAAGGCGTGACGGTGACCGTCGATCTCGATGAGATGAAGATCATCGGGTTTAGGGACAGATATATGGCTCCGATGCCGAAGGCTGATGGGACTGAGTTCAGAGAATCGATGCTCAAGCCGCCGTTTTTGCCGCCGTTGAATGGAATCAAGGTGGTGCAGCCGGAAGGCCCCAGCTTTAAAGTCGATGGCCACTCCGTCAGTTGGGCGAACTGGAATTTCCACTTGGGGTTCGACGAGCGAGCGGGACCAATCATATCGGTAGCTTCAATCTACGACATGGAAAAGCAAGAACGCCGACAAGTATTGTACAGAGCCTTCATATCGGAGCTGCTCGTGCCGTACATGGACTTGGACGATGAATGGTACTACCGGACCTTTTTCGACGTCGGCGAGTACGGCTTCGGCCACTGTGCTGTGCCATTGGTACCGCTTAGAGACTGCCCGGAGAACGCCGTGTTCATGGATACGTACATGGCCGCCGGAGATGGGCGCCCGGTCAAGATGCCCAACACTTTTTGCTTGTTTGAACGCCATGCCGGTGATATCTTGTGGCGCCACACCGAGGCCACAATTCCGGATACACTTATTACAGAGACGAGGAGAGAAGTGAGCTTGATTGTGAGAATGGTGGCAGCTTCTGGCAACTATGACTATATTATTGACTGGGAATTCAAGCAGAGTGGCTCCATTGTTGCTAATGTTGGGTTAACCGGGTTGTTGGAAGTTAGGGCATCGAAGTACACTCACAACGACCAAATAAAGGAGGAAGTCTACGGTACTCTGATAGCCGAGAATACGATCGGCGTCCGTCATGACCACTTCCTCATCTACCACCTCGATTTGGACGTCGACGGCGGCGCCAACTCCTTCGTCAAATCCAACCTCCGAACAGTCCGATCGCCGGACCCCAATTTCCCCAGGCGGAGCTATTGGACGGTCGACGCCGAGACGGCTAAAACAGAGGCCGATGCAAGGATCAGATTCGGCCTCCACGAGGCGGAGTTGTCGATCGTTAATCCCAATCGGAGGACCAAACTGGGGAATCCCGTCGGCTACCGTCTTGTTCCGAAGTCGGCAATCAATCCTCTTCTGAGTTCAGATGATTACATCCAAATTAGGGGAGCGTTTACGAATTACAATGTGTGGGTTACACCGTATAATAGCTCTGAGAAATGGGTTTCTGGACTCTTCACTGATCAGAGCCGTGGAGACGATACCTTGGCTACTTGGAGTCTCAGGAACAGAGAGATAGAGAACAAGGACATAGTGATGTGGTACACAATAGGGTTTCATCATGTGCCTTGTCAAGAGGATTTCCCATTGATGCCAACTTTGAGCAGTGGGTTTGAGCTGAAGCCAACCAATTTCTTTGAGAGCAATCCTGTGCTTAAAGTCACCCCACCCCAGCTACTCAACTGGTCTCATTGCTCTCAGTAG 2034 53.44 MPNNMAKLKPSKLILFFLPLLTSLLSSAAAVHRHPLDPLSPTEFELIRSIITNATPNPSTNLTFHYVALADPNKQSLLSWLSNPKAPPPPRRATAIVRFNKANHEILIDLTQNSILLNRVHSGPGFATFTSEEQFAASALPLSHPPFAAAMKKRGLKMEEVVCGCFSVGWFGEKKMQKRIVRVQCFYLDGSVNLYMRPVEGVTVTVDLDEMKIIGFRDRYMAPMPKADGTEFRESMLKPPFLPPLNGIKVVQPEGPSFKVDGHSVSWANWNFHLGFDERAGPIISVASIYDMEKQERRQVLYRAFISELLVPYMDLDDEWYYRTFFDVGEYGFGHCAVPLVPLRDCPENAVFMDTYMAAGDGRPVKMPNTFCLFERHAGDILWRHTEATIPDTLITETRREVSLIVRMVAASGNYDYIIDWEFKQSGSIVANVGLTGLLEVRASKYTHNDQIKEEVYGTLIAENTIGVRHDHFLIYHLDLDVDGGANSFVKSNLRTVRSPDPNFPRRSYWTVDAETAKTEADARIRFGLHEAELSIVNPNRRTKLGNPVGYRLVPKSAINPLLSSDDYIQIRGAFTNYNVWVTPYNSSEKWVSGLFTDQSRGDDTLATWSLRNREIENKDIVMWYTIGFHHVPCQEDFPLMPTLSSGFELKPTNFFESNPVLKVTPPQLLNWSHCSQ 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40014218 40020379 + Lag0016659.1 Lac12g2287 590884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2287 677 ProSitePatterns Copper amine oxidase copper-binding site signature. 626 639 IPR049947 -
Lac12g2287 677 Pfam Copper amine oxidase, enzyme domain 248 662 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lac12g2287 677 Pfam Copper amine oxidase, N3 domain 129 220 IPR015802 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lac12g2287 677 SUPERFAMILY Amine oxidase N-terminal region 125 232 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lac12g2287 677 Pfam Copper amine oxidase, N2 domain 34 116 IPR015800 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lac12g2287 677 SUPERFAMILY Amine oxidase catalytic domain 236 671 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lac12g2287 677 FunFam Amine oxidase 32 127 - -
Lac12g2287 677 FunFam Amine oxidase 128 222 - -
Lac12g2287 677 FunFam Amine oxidase 258 673 - -
Lac12g2287 677 Gene3D - 32 127 - -
Lac12g2287 677 SUPERFAMILY Amine oxidase N-terminal region 33 122 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lac12g2287 677 Gene3D - 128 222 - -
Lac12g2287 677 Gene3D Copper amine oxidase, catalytic domain 258 674 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Lac12g2287 677 PANTHER COPPER AMINE OXIDASE 30 668 IPR000269 GO:0005507(InterPro)|GO:0005507(PANTHER)|GO:0008131(PANTHER)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0009308(PANTHER)|GO:0048038(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2287 K00276 - - csv:101210998 1115.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2281 Lac-Chr12:39938831 Lac12g2287 Lac-Chr12:40014218 0.00E+00 dispersed
Lac12g2282 Lac-Chr12:39947558 Lac12g2287 Lac-Chr12:40014218 2.20E-202 dispersed
Lac12g2287 Lac-Chr12:40014218 Lac12g2291 Lac-Chr12:40053547 5.80E-137 dispersed
Lac12g2287 Lac-Chr12:40014218 Lac12g2288 Lac-Chr12:40030291 5.40E-82 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g482 . . . . . . Bma04g00787 . . Cmo17g00226 . . . . . . . . . . . . . . Cla06g00578 Cam06g0616 Cec06g0617 Cco06g0623 Clacu06g0603 Cmu06g0596 Cre06g1365 . . . . . . Chy05g00402 . . . . . . . . . Sed04g1901 . . . Cma17g00240 . . . Cpe17g00145 Bhi12g01715 Tan06g2526 Cmetu05g0015 Lac12g2287 Hepe03g0192 . Lcy13g0277 . . . . . . . Lsi09g01325 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97