Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2300 ATGCTGTCGAATCAACTGCAAAATGGGATGGACAGAGCAAAGAACATGTGGTCTCGCCTTCCGAACACCGAGGAAGATGACGACGACCATGTTGGTTTCTTGAAGAAGAATGATGGGGGTGGCGTCGAGAGCCTTGATTATGAGGTCATCGAGAATTATGCTTACTGGGATGAGCAGGCGCAAAGAGGGAAATTATTTATTGGCTATAGTGTGGCAGTTAAGTGGCTGTATGCCTTGCTCATTGGCATTGGCACAGGATTGGCTGCAGTTTTCATAAATATGGCCGTTGAGAACTTTGCTGGCTGGAAATTTTCTCTGACATTTTCCCTAATTCAAAAGTCATATGTAGCTGGTTTTATAGTATATTTAGCAATCAACTTGGTTCTAGTATTATCATCTGTATATATAGTCACACACTTTGCTCCTGCAGCAGCTGGATCTGGCATACCTGAAATCAAGGGTTATTTGAATGGAATTGACATTCATGGTGTCCTTTTCTTCAGAACCCTAATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGATTGGCTTTAGGCAAAGAGGGGCCTCTTGTACATACTGGCGCTTGTATTGCTTCTTTGCTTGGACAAGGTGGATCTGCTAAATATCATCTCAATTCCAGGTGGTTACAAGTGTTCAAGAGTGACCGCGATCGTCGTGATCTTGTGACCTGTGGGTGTGCAGCAGGAGTTGCTGCAGCTTTTAGAGCTCCAGTTGGTGGTGTATTATTTGCACTGGAAGAAGTAACATCTTGGTGGAAGAGTCAACTTTTGTGGCGTGTATTTTTTACTTCAGCTGTGGTGGCTGTTGTGGTGCGTGCAGCTATGGGATGGTGTAAGAGTGGGAAGTGTGGACATTTTGGTTCTGGTGGTTTCATAATATGGGACATATCAGATGGCCAAGAGGACTATGCCTTTGGGGAGTTGTTGCCCATGACTGTGATTGGGGTTATTGGAGGCTTATTAGGAGCACTATTCAACCAGCTTACTCTTTACATGACTTATTGGCGACGAAACCATTTGCACAAGAAGGGGAACCGAGTCAAGATTATTGAGGCTTGTCTCATCTCAGTGTTAACGTCAATTATTTCCTTTGGACTACCACTCCTAAGGCAATGTACTCCATGCCCCAAACCTGATCCTGATTTGGGTAATGAATGCCCAAGGCCTCCAGGGATGTATGGGAATTATGTTAATTTTTACTGCAGTAAGGACAATGAATACAATGACCTTGCAACCATCTTCTTCAACACCCAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACAATGAATGAATTCAGTGCTCGGAGTTTACTGACCTTTCTGGTTATGTTTTATACCTTAGCTGTTGTGACATTCGGTACTGCAGTTCCTGCTGGTCAATTTGTTCCTGGTATAATGATTGGGTCTACATATGGACGTTTGGTTGGAAAGTTTGTGGTCAGTTTCTACAAGAAACCCAACATTGAAGAGGGAACATATGCTTTGTTGGGTGCTGCATCTTTTCTAGGAGGTTCTATGCGAATGACAGTGTCTCTGTGTGTCATCATGGTTGAAATTTCAAACAATTTGAAATTTTTACCTCTCATCATGCTTGTCCTTCTGATTTCCAAGGCTGTTGGCGATGCCTTTAATGAAGGCCTATATGAAGAGCAGGCTCAGTTGAGGGGTATCCCATTACTGGAATCAAGACCAAAGTACCAGATGCGGAAAATTACAGCGAAGGAGGCCTGTGGAAAAAGGGTTGTGTCCTTCCCCCGTGTTGTTAAGGTTGCAGATGTTGTTAGTATTTTGCGGAGCAACAAACATAATGGCTTTCCTGTGCTTGATTACTCTAGAAATGGAGAAACACGTGTCATTGGACTGATGCTTAGAAGTTACTTGTTAGGACTTCTGCAGTCCAAAGTAGATTTCCAGCACAGTCCTTCGCCTTCTGATCCAAGAGGATCCATACCAAGCAGGCACAATTTCAGTGAATTTGTGAAACCTGCTTCCAGTAAAGGAATTTGTATTAATGATATAAATCTTAGTTCAGAGGACCTGGAAATGTTCATCGATCTACTCCCATATCTGAATCCATCTCCATATATTGTCCCAGAAGATATGTCTTTGACAAAGGTATATAATCTTTTCCGGCAACTAGGTCTGAGACACGCATTTGTTGTTCCCCGTCCATCAAATGTGGTTGGTTTGATCACTCGAAAGGATTTGTTGATAGAGGATAGCGAAGATTCGGATGCAATGGAACTACAATCGACTAGTGTAAGCCTCAATGCTTCTCTTCAGATTGATTCTTATGATTTAGTCCCTTTAGTCACCGGCGAAACGAGTTTGTCTAATGTGCCGAAAGAAGTAATGTATAAAAATCCTACGAACTGTGATATAATTCTTTATTATTTGCCGGCTGGGACTCCAAGCCCAAGCCAGGGACAGTTTGGGAATGGGGAAAATCAGATATGTAATGTAAGGGGATGGAGATGGAGACAGAGACAGGAATGTGTATGGCCAAATTTCTTGGGAAGCTCTGAGTGA 2565 42.81 MLSNQLQNGMDRAKNMWSRLPNTEEDDDDHVGFLKKNDGGGVESLDYEVIENYAYWDEQAQRGKLFIGYSVAVKWLYALLIGIGTGLAAVFINMAVENFAGWKFSLTFSLIQKSYVAGFIVYLAINLVLVLSSVYIVTHFAPAAAGSGIPEIKGYLNGIDIHGVLFFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSAKYHLNSRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWKSQLLWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYAFGELLPMTVIGVIGGLLGALFNQLTLYMTYWRRNHLHKKGNRVKIIEACLISVLTSIISFGLPLLRQCTPCPKPDPDLGNECPRPPGMYGNYVNFYCSKDNEYNDLATIFFNTQDDAIRNLFSAKTMNEFSARSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVSFYKKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLISKAVGDAFNEGLYEEQAQLRGIPLLESRPKYQMRKITAKEACGKRVVSFPRVVKVADVVSILRSNKHNGFPVLDYSRNGETRVIGLMLRSYLLGLLQSKVDFQHSPSPSDPRGSIPSRHNFSEFVKPASSKGICINDINLSSEDLEMFIDLLPYLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPSNVVGLITRKDLLIEDSEDSDAMELQSTSVSLNASLQIDSYDLVPLVTGETSLSNVPKEVMYKNPTNCDIILYYLPAGTPSPSQGQFGNGENQICNVRGWRWRQRQECVWPNFLGSSE 854
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 40172889 40180612 - Lag0016672.1 Lac12g2300 590897
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2300 854 SUPERFAMILY CBS-domain pair 577 749 IPR046342 -
Lac12g2300 854 FunFam Chloride channel ClC3 66 383 - -
Lac12g2300 854 Pfam Voltage gated chloride channel 130 552 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac12g2300 854 PRINTS Chloride channel signature 237 256 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac12g2300 854 PRINTS Chloride channel signature 521 540 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac12g2300 854 PRINTS Chloride channel signature 142 159 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac12g2300 854 PRINTS Chloride channel signature 503 519 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac12g2300 854 PRINTS Chloride channel signature 173 192 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac12g2300 854 PRINTS Chloride channel signature 559 573 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac12g2300 854 PRINTS Chloride channel signature 468 488 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac12g2300 854 ProSiteProfiles CBS domain profile. 702 758 IPR000644 -
Lac12g2300 854 SMART cbs_1 592 644 IPR000644 -
Lac12g2300 854 SMART cbs_1 705 753 IPR000644 -
Lac12g2300 854 CDD CBS_pair_voltage-gated_CLC_euk_bac 593 749 - -
Lac12g2300 854 Pfam CBS domain 703 750 IPR000644 -
Lac12g2300 854 PRINTS Plant CLC chloride channel signature 290 297 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lac12g2300 854 PRINTS Plant CLC chloride channel signature 420 436 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lac12g2300 854 PRINTS Plant CLC chloride channel signature 48 56 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lac12g2300 854 PRINTS Plant CLC chloride channel signature 272 282 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lac12g2300 854 PRINTS Plant CLC chloride channel signature 258 266 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lac12g2300 854 Gene3D Clc chloride channel 69 573 - -
Lac12g2300 854 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 27 758 IPR051280 GO:0015108(PANTHER)|GO:0043231(PANTHER)
Lac12g2300 854 CDD ClC_6_like 43 572 - -
Lac12g2300 854 SUPERFAMILY Clc chloride channel 52 574 IPR014743 -
Lac12g2300 854 Gene3D - 574 756 IPR046342 -
Lac12g2300 854 FunFam Chloride channel protein 694 778 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2300 Lac-Chr12:40172889 Lac5g1786 Lac-Chr5:35672501 1.50E-185 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2300 K05016 - csv:101215989 1435.62