Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac12g2300 | ATGCTGTCGAATCAACTGCAAAATGGGATGGACAGAGCAAAGAACATGTGGTCTCGCCTTCCGAACACCGAGGAAGATGACGACGACCATGTTGGTTTCTTGAAGAAGAATGATGGGGGTGGCGTCGAGAGCCTTGATTATGAGGTCATCGAGAATTATGCTTACTGGGATGAGCAGGCGCAAAGAGGGAAATTATTTATTGGCTATAGTGTGGCAGTTAAGTGGCTGTATGCCTTGCTCATTGGCATTGGCACAGGATTGGCTGCAGTTTTCATAAATATGGCCGTTGAGAACTTTGCTGGCTGGAAATTTTCTCTGACATTTTCCCTAATTCAAAAGTCATATGTAGCTGGTTTTATAGTATATTTAGCAATCAACTTGGTTCTAGTATTATCATCTGTATATATAGTCACACACTTTGCTCCTGCAGCAGCTGGATCTGGCATACCTGAAATCAAGGGTTATTTGAATGGAATTGACATTCATGGTGTCCTTTTCTTCAGAACCCTAATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGATTGGCTTTAGGCAAAGAGGGGCCTCTTGTACATACTGGCGCTTGTATTGCTTCTTTGCTTGGACAAGGTGGATCTGCTAAATATCATCTCAATTCCAGGTGGTTACAAGTGTTCAAGAGTGACCGCGATCGTCGTGATCTTGTGACCTGTGGGTGTGCAGCAGGAGTTGCTGCAGCTTTTAGAGCTCCAGTTGGTGGTGTATTATTTGCACTGGAAGAAGTAACATCTTGGTGGAAGAGTCAACTTTTGTGGCGTGTATTTTTTACTTCAGCTGTGGTGGCTGTTGTGGTGCGTGCAGCTATGGGATGGTGTAAGAGTGGGAAGTGTGGACATTTTGGTTCTGGTGGTTTCATAATATGGGACATATCAGATGGCCAAGAGGACTATGCCTTTGGGGAGTTGTTGCCCATGACTGTGATTGGGGTTATTGGAGGCTTATTAGGAGCACTATTCAACCAGCTTACTCTTTACATGACTTATTGGCGACGAAACCATTTGCACAAGAAGGGGAACCGAGTCAAGATTATTGAGGCTTGTCTCATCTCAGTGTTAACGTCAATTATTTCCTTTGGACTACCACTCCTAAGGCAATGTACTCCATGCCCCAAACCTGATCCTGATTTGGGTAATGAATGCCCAAGGCCTCCAGGGATGTATGGGAATTATGTTAATTTTTACTGCAGTAAGGACAATGAATACAATGACCTTGCAACCATCTTCTTCAACACCCAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACAATGAATGAATTCAGTGCTCGGAGTTTACTGACCTTTCTGGTTATGTTTTATACCTTAGCTGTTGTGACATTCGGTACTGCAGTTCCTGCTGGTCAATTTGTTCCTGGTATAATGATTGGGTCTACATATGGACGTTTGGTTGGAAAGTTTGTGGTCAGTTTCTACAAGAAACCCAACATTGAAGAGGGAACATATGCTTTGTTGGGTGCTGCATCTTTTCTAGGAGGTTCTATGCGAATGACAGTGTCTCTGTGTGTCATCATGGTTGAAATTTCAAACAATTTGAAATTTTTACCTCTCATCATGCTTGTCCTTCTGATTTCCAAGGCTGTTGGCGATGCCTTTAATGAAGGCCTATATGAAGAGCAGGCTCAGTTGAGGGGTATCCCATTACTGGAATCAAGACCAAAGTACCAGATGCGGAAAATTACAGCGAAGGAGGCCTGTGGAAAAAGGGTTGTGTCCTTCCCCCGTGTTGTTAAGGTTGCAGATGTTGTTAGTATTTTGCGGAGCAACAAACATAATGGCTTTCCTGTGCTTGATTACTCTAGAAATGGAGAAACACGTGTCATTGGACTGATGCTTAGAAGTTACTTGTTAGGACTTCTGCAGTCCAAAGTAGATTTCCAGCACAGTCCTTCGCCTTCTGATCCAAGAGGATCCATACCAAGCAGGCACAATTTCAGTGAATTTGTGAAACCTGCTTCCAGTAAAGGAATTTGTATTAATGATATAAATCTTAGTTCAGAGGACCTGGAAATGTTCATCGATCTACTCCCATATCTGAATCCATCTCCATATATTGTCCCAGAAGATATGTCTTTGACAAAGGTATATAATCTTTTCCGGCAACTAGGTCTGAGACACGCATTTGTTGTTCCCCGTCCATCAAATGTGGTTGGTTTGATCACTCGAAAGGATTTGTTGATAGAGGATAGCGAAGATTCGGATGCAATGGAACTACAATCGACTAGTGTAAGCCTCAATGCTTCTCTTCAGATTGATTCTTATGATTTAGTCCCTTTAGTCACCGGCGAAACGAGTTTGTCTAATGTGCCGAAAGAAGTAATGTATAAAAATCCTACGAACTGTGATATAATTCTTTATTATTTGCCGGCTGGGACTCCAAGCCCAAGCCAGGGACAGTTTGGGAATGGGGAAAATCAGATATGTAATGTAAGGGGATGGAGATGGAGACAGAGACAGGAATGTGTATGGCCAAATTTCTTGGGAAGCTCTGAGTGA | 2565 | 42.81 | MLSNQLQNGMDRAKNMWSRLPNTEEDDDDHVGFLKKNDGGGVESLDYEVIENYAYWDEQAQRGKLFIGYSVAVKWLYALLIGIGTGLAAVFINMAVENFAGWKFSLTFSLIQKSYVAGFIVYLAINLVLVLSSVYIVTHFAPAAAGSGIPEIKGYLNGIDIHGVLFFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSAKYHLNSRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWKSQLLWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYAFGELLPMTVIGVIGGLLGALFNQLTLYMTYWRRNHLHKKGNRVKIIEACLISVLTSIISFGLPLLRQCTPCPKPDPDLGNECPRPPGMYGNYVNFYCSKDNEYNDLATIFFNTQDDAIRNLFSAKTMNEFSARSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVSFYKKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLISKAVGDAFNEGLYEEQAQLRGIPLLESRPKYQMRKITAKEACGKRVVSFPRVVKVADVVSILRSNKHNGFPVLDYSRNGETRVIGLMLRSYLLGLLQSKVDFQHSPSPSDPRGSIPSRHNFSEFVKPASSKGICINDINLSSEDLEMFIDLLPYLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPSNVVGLITRKDLLIEDSEDSDAMELQSTSVSLNASLQIDSYDLVPLVTGETSLSNVPKEVMYKNPTNCDIILYYLPAGTPSPSQGQFGNGENQICNVRGWRWRQRQECVWPNFLGSSE | 854 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 40172889 | 40180612 | - | Lag0016672.1 | Lac12g2300 | 590897 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac12g2300 | 854 | SUPERFAMILY | CBS-domain pair | 577 | 749 | IPR046342 | - | |
| Lac12g2300 | 854 | FunFam | Chloride channel ClC3 | 66 | 383 | - | - | |
| Lac12g2300 | 854 | Pfam | Voltage gated chloride channel | 130 | 552 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac12g2300 | 854 | PRINTS | Chloride channel signature | 237 | 256 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac12g2300 | 854 | PRINTS | Chloride channel signature | 521 | 540 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac12g2300 | 854 | PRINTS | Chloride channel signature | 142 | 159 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac12g2300 | 854 | PRINTS | Chloride channel signature | 503 | 519 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac12g2300 | 854 | PRINTS | Chloride channel signature | 173 | 192 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac12g2300 | 854 | PRINTS | Chloride channel signature | 559 | 573 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac12g2300 | 854 | PRINTS | Chloride channel signature | 468 | 488 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac12g2300 | 854 | ProSiteProfiles | CBS domain profile. | 702 | 758 | IPR000644 | - | |
| Lac12g2300 | 854 | SMART | cbs_1 | 592 | 644 | IPR000644 | - | |
| Lac12g2300 | 854 | SMART | cbs_1 | 705 | 753 | IPR000644 | - | |
| Lac12g2300 | 854 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 593 | 749 | - | - | |
| Lac12g2300 | 854 | Pfam | CBS domain | 703 | 750 | IPR000644 | - | |
| Lac12g2300 | 854 | PRINTS | Plant CLC chloride channel signature | 290 | 297 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lac12g2300 | 854 | PRINTS | Plant CLC chloride channel signature | 420 | 436 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lac12g2300 | 854 | PRINTS | Plant CLC chloride channel signature | 48 | 56 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lac12g2300 | 854 | PRINTS | Plant CLC chloride channel signature | 272 | 282 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lac12g2300 | 854 | PRINTS | Plant CLC chloride channel signature | 258 | 266 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lac12g2300 | 854 | Gene3D | Clc chloride channel | 69 | 573 | - | - | |
| Lac12g2300 | 854 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 27 | 758 | IPR051280 | GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Lac12g2300 | 854 | CDD | ClC_6_like | 43 | 572 | - | - | |
| Lac12g2300 | 854 | SUPERFAMILY | Clc chloride channel | 52 | 574 | IPR014743 | - | |
| Lac12g2300 | 854 | Gene3D | - | 574 | 756 | IPR046342 | - | |
| Lac12g2300 | 854 | FunFam | Chloride channel protein | 694 | 778 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g2300 | Lac-Chr12:40172889 | Lac5g1786 | Lac-Chr5:35672501 | 1.50E-185 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac12g2300 | K05016 | - | csv:101215989 | 1435.62 |