Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2301 ATGGGAAAGTTCTCAGTTCAATTACTGTGCTGGCTGGTAGCTGTGCCTGCCACTTCTGTGCAGTACATCTCGCATCGAAGTGCAGGTAGCTTACACCACACCGGTGTGCAACAGTTCTTGCAGGTCACGTCTTCCCCGTCTTCAGCAAATTCACTGATGATGTCACAGATTTTTGGCCTGGACTTTCTTGTGCGTTTACGGGAGCTTGTTGATGATAGTTTTCGCGGAAGAATGTCTCGTGTTCGGAATTTCAATTCTCAAGGAGGGATGTCTAATGATTACTACTGGGCCTCCTTGAATAGATATAATTTCAGAAACCACCATGAGAAGACAAGTAGGAGCAATTATTATGATTACGGCTATTGCAACCATTTTGAATTCTCAGGGCAGCATAAAGAGCAGATTGACAGGTCTCTTTATGCGAGGCCTGATACTTTGAACTCCATCAAGCCTCATAACTCTCAGCCTTTTAAGAGGAGGAAGTTTTCTGCTTCACGTTGGGAGGATAGTGGAAGATACCATTGGCAGGCAAGGACATATGATAGTGGACCTTCAATCTATAGCAATTTGGTCCATCCTCCTCCAAGATCCAACAATGATGTCTCTACATCTGCCAGCTGTAAACGAGATCGCTCATTAATGGACGATGATGAGCCTTTTTTTATGTCCAGGGATGAGATTGAGAGATGTTCACCTTCAAGAAAAGATGGTATTGATACACTACGTGAAACACATCTGCGGTACACATATTGTGCCTTCCTTCAGAGTCTTGGTTTGCAGCTTGAGTTACCACAGACTACAATTGGCACTGCAATGATTCTGTGCCATCGGTTTTTTGTTCGAAGGTCACATGCATGTCATGATAGATTTTTGATTGCCACGTCTGCACTCTTCCTTGCTGCAAAATCCGAGGAGACACCACGGCCTCTGAACAATGTATTGCGAGCTTCATGTGAAATTTTGCACAAACAGGATTTTAATCTCTTATCTTACATGCTCCCTGTTGATTGGTTTGAGCAATATCGTGAAAGAGTAACTGAGGCTGAGCAATTGATATTGACTACTCTGAACTTTGAACTCAACGTACAACATCCCTATGCTCCTCTTATGTCCGTTCTTAACAAGATAGGTCTTTCACAGTCGATCTTGGTGAATCTTGCACTGAACTTGATCAGTGAAGGGCTAAGGAGCTCACTCTGGCTTCAATTTAAGCCCCATCAGATAGCTGCTGGAGCTGCATATCTGTCTGCCAAGCTATTGAATGTGGATTTTGCTCCTTATCAAAATATCTTGCAAGAGTTTCAAGCAACGCCAGCTATTCTCCAAGATGTGGCCCAGCAGTTGATGGAGCTGTTCTAA 1359 43.64 MGKFSVQLLCWLVAVPATSVQYISHRSAGSLHHTGVQQFLQVTSSPSSANSLMMSQIFGLDFLVRLRELVDDSFRGRMSRVRNFNSQGGMSNDYYWASLNRYNFRNHHEKTSRSNYYDYGYCNHFEFSGQHKEQIDRSLYARPDTLNSIKPHNSQPFKRRKFSASRWEDSGRYHWQARTYDSGPSIYSNLVHPPPRSNNDVSTSASCKRDRSLMDDDEPFFMSRDEIERCSPSRKDGIDTLRETHLRYTYCAFLQSLGLQLELPQTTIGTAMILCHRFFVRRSHACHDRFLIATSALFLAAKSEETPRPLNNVLRASCEILHKQDFNLLSYMLPVDWFEQYRERVTEAEQLILTTLNFELNVQHPYAPLMSVLNKIGLSQSILVNLALNLISEGLRSSLWLQFKPHQIAAGAAYLSAKLLNVDFAPYQNILQEFQATPAILQDVAQQLMELF 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40185094 40195269 - Lag0016673.1 Lac12g2301 590898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2301 452 SUPERFAMILY Cyclin-like 363 452 IPR036915 -
Lac12g2301 452 Gene3D - 362 452 - -
Lac12g2301 452 Pfam Cyclin, N-terminal domain 235 361 IPR006671 -
Lac12g2301 452 FunFam Cyclin-T1-2 203 386 - -
Lac12g2301 452 PANTHER CYCLIN 216 452 IPR043198 GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0008024(PANTHER)|GO:0016538(PANTHER)|GO:0016538(InterPro)|GO:0032786(PANTHER)|GO:0061575(PANTHER)
Lac12g2301 452 SUPERFAMILY Cyclin-like 220 362 IPR036915 -
Lac12g2301 452 SMART cyclin_7 252 354 IPR013763 -
Lac12g2301 452 SMART cyclin_7 367 450 IPR013763 -
Lac12g2301 452 Gene3D - 209 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2301 K15188 - - csv:101216477 709.523
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2301 Lac-Chr12:40185094 Lac6g0440 Lac-Chr6:3586062 2.10E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g467 . Blo12g00321 Bda03g00895 . Bpe04g00840 . Bma04g00793 . Cmo08g01129 Cmo17g00236 . . . . . . . . . . . . . . Cla06g00566 Cam06g0606 Cec06g0606 Cco06g0612 Clacu06g0592 Cmu06g0587 Cre06g1353 Cone14ag0837 . . . . . . . . . . . . . . . . . . Cma08g01155 Cma17g00251 Car08g01033 Car17g00225 Cpe12g00207 . Bhi12g01732 . . Lac12g2301 . . . . . . . . . . Lsi09g01335 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006517 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38