Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2308 ATGTGGGAGTGCGACCATTTCAAAGCGACCTTCTCGCGAAAACCCCAGGGCCAGGCAAATCTGTTTCCTCACAGGGGAGAGAGAGCGATGACGATGGCGATACCAGGGAGCATTGTCGCTGTTCTTCTCCTTATGTTGCTTCTCATCATCCTCCTCCTCCTCATTGCCTGCAAACCATGGCGCTTCTTTTCCTATTCCCGTTCTCGCACCATCAAGGTTCCTGACCTTGAGAGACCCCTTGTATCTGATGCTGCGGATGCCACTGAAAACCAAATCAATGAGCTTCCCAGAGATTATGATTTGGAGGGTGCACTCCAAACTGATGGACATTTTCGGTCTCCAAGACTACACGGCCTGATTCATAAACAAAGACTGCCAGTTGCATCTCCCCATTTAAGTCAGGGCGATAGACTGGTTCCAGATGTAGTTCCTGATTCTTTAGAAGATATTGCGGTTGGTCAAACACTTAAACGTTCGTACTTCACAAGCCAGATTCCAGAAGTTCAAAAGCATGCAAACCGGAGCCTAGGAAGTGACCAACTCCATGAAATTGCAAGTCAAGATATCTCACATGGAAGAAGTTACCTCACTTTGGAGGTTACCTCCGGTCCTTCTCGTGGAGCGCGTTATTCCATACATTCTGCAAACACGTCTAGGCTCCCATTAACTCTTGGAAGAGTACCTCCTAGCGATTTACAGCTGAAGGATTCAGAAGTCTCAGGGAAGCATGCCTTGATAAAATGGAATCTAGATAATATGAAATGGGAGCTTGTGGACCTGGGTAGCTTAAATGGGACCTTGTTAAATTCTCAACCAATCAACAATCCCGATTCTGGAAGTAGACATTGGGGTCCGCCAGTTGAGCTTGCGAGTGGAGATGTTATAACTCTTGGTACAACCTCCAAAGTGTATGGTAGGCAATCTTTGAAGTCTTTTGGCTGGACAATCTTCTTGTGTAGGGAGATTGGGGAGAGTTCACCTTCTCTAAACAGAGCAGGCATCCTGGGGAGAACGAGAAATATGGCGCAAAGACAACTTGAAGAACGGATGAGCGAATCTGAACGAAGTATGGAGAATCTGAGAGACAAGATCCCGGAATTGGAAAAAACTATAGCAGAATTAAACAAAAGTATGGAAAGGTTATTCAACAGTCTGGAAGAACAACGACTGGTAACAGTAGAAAATCAAAAGGCGCTGGCCAATTTGGCCTCTGGAGTCTCACGTAGCGGAGCAGCTGGGGAAAAGGAGGTCGGACAAAAGAGGAAGGCCCCGGAAAATGAAAGTGCAACCTCGAGTAGAAAAGAACCACGAGGAGAAGAGGGTTCGTATGATCGACAAAAATTCAAAAAGGTTGAAATGCCGACCTTTGAAGGAGATAACCCTGATGACTGGCTTTTTCGAGCAGAGAGGTATTTTGACATCCACCAACTCACCGACTTGGAGAAGATTACGGTGACGGCGGTTAGCTTTTCTGGCGCAGCTCTCCACTGGTATCGGTGGTCCGAAGGGAGGGAACCATTCATCAATTGGCAGAATTTGAAGTATCGAATGCTGGAGAGATTTCGTCCGTCCCAGGAAGGCTCCTTATGCGCTCGATTCTTAGCCGTGAAGCAAGAAAGTACGGTAGCGGAGTTTCGCAAACAATTCGAGACTTTAGCCGCACCATTACCGCACTTAGCTGAGGAGGTGTTGGAGAACACTTTCCTGAATGGGCTCTCACCTGAAGTCCGTTCGGAGTTAAGATGCTTTGAGCCCACTGGGCTGGAGGCTATCATGAAGACGGCCCAAAGGATTGAAGATAAGATGCATGCACTGTCGCAGCCAGTAGGCCCAAGCCTACTTCGGGGTAGTAAACCCATGATGATCCCGCCTCTCAAGGCACTACCACCGCCCAAACCATCAGACACTCAGAATCCGATTAAGACAATTACTCTCCCCAATCTCCCTGGTCATTTTTTTCCCATGTCCGTTGCATCTGCTTCAAGGAGACCTCTGTTTTGGTCAAAGATGGGTCTCCTTTTATCACAACCTGGGAGTCACCTTGCCCGATAG 2052 47.66 MWECDHFKATFSRKPQGQANLFPHRGERAMTMAIPGSIVAVLLLMLLLIILLLLIACKPWRFFSYSRSRTIKVPDLERPLVSDAADATENQINELPRDYDLEGALQTDGHFRSPRLHGLIHKQRLPVASPHLSQGDRLVPDVVPDSLEDIAVGQTLKRSYFTSQIPEVQKHANRSLGSDQLHEIASQDISHGRSYLTLEVTSGPSRGARYSIHSANTSRLPLTLGRVPPSDLQLKDSEVSGKHALIKWNLDNMKWELVDLGSLNGTLLNSQPINNPDSGSRHWGPPVELASGDVITLGTTSKVYGRQSLKSFGWTIFLCREIGESSPSLNRAGILGRTRNMAQRQLEERMSESERSMENLRDKIPELEKTIAELNKSMERLFNSLEEQRLVTVENQKALANLASGVSRSGAAGEKEVGQKRKAPENESATSSRKEPRGEEGSYDRQKFKKVEMPTFEGDNPDDWLFRAERYFDIHQLTDLEKITVTAVSFSGAALHWYRWSEGREPFINWQNLKYRMLERFRPSQEGSLCARFLAVKQESTVAEFRKQFETLAAPLPHLAEEVLENTFLNGLSPEVRSELRCFEPTGLEAIMKTAQRIEDKMHALSQPVGPSLLRGSKPMMIPPLKALPPPKPSDTQNPIKTITLPNLPGHFFPMSVASASRRPLFWSKMGLLLSQPGSHLAR 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40239531 40244166 - Lag0016680.1 Lac12g2308 590905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2308 683 Coils Coil 343 391 - -
Lac12g2308 683 MobiDBLite consensus disorder prediction 414 448 - -
Lac12g2308 683 Gene3D - 190 311 - -
Lac12g2308 683 PANTHER NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 219 437 IPR050923 GO:0003729(PANTHER)
Lac12g2308 683 Pfam Retrotransposon gag protein 486 573 IPR005162 -
Lac12g2308 683 ProSiteProfiles Forkhead-associated (FHA) domain profile. 222 273 IPR000253 GO:0005515(InterPro)
Lac12g2308 683 MobiDBLite consensus disorder prediction 406 448 - -
Lac12g2308 683 SUPERFAMILY SMAD/FHA domain 195 304 IPR008984 GO:0005515(InterPro)
Lac12g2308 683 SMART FHA_2 221 273 IPR000253 GO:0005515(InterPro)
Lac12g2308 683 Pfam FHA domain 223 298 IPR000253 GO:0005515(InterPro)
Lac12g2308 683 CDD FHA_PP2C70-like 196 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0389 Lac-Chr10:3074023 Lac12g2308 Lac-Chr12:40239531 9.60E-28 dispersed
Lac12g2308 Lac-Chr12:40239531 Lac7g1658 Lac-Chr7:20396983 1.80E-98 dispersed
Lac12g2308 Lac-Chr12:40239531 Lac6g0642 Lac-Chr6:5443043 3.00E-101 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2308 K01090 - csv:101217195 457.218