Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2311 ATGCAAGATTTCTTCGGATCCGTTCGCCGATCCTTGGTGTTTCTAGCTCCCGACGGTGACGACGGTGGGAGGTTCGGCGGCCTGGTCGAGAAGATCGGCTCGAGCATCCGTAAATCTCGAAATGGACTGTTTTCTAAGCATTCAGTGCGGGCTCTTCCTCCGGTTGTGAAGGAAGATGCGCCTCCGATTTGGTGGCGGAAGGGAGAGTTGATCGGATGCGGTGCTTTTGGTCGAGTTTATATGGGGATGAATCTTGATTCTGGAGAGCTTCTTGCAGTTAAACAAGTCTCGATTGCGGCTAATAGTGCTTCAAGGGAGAAAGCGCAAGCTCACATACGGGAGCTGGAGGAGGAAGTGAAGCTTTTGAAAAATCTTTCTCACCCTAATATTGTGAGATACCTGGGAACTGCCAGAGAGGAAGATTCGTTAAATATTCTATTGGAGTTTGTTCCTGGAGGATCAATATCATCTCTGTTAGGGAAATTTGGATCTTTCCCTGAGTCTGTTATAAGAACCTACACGAAGCAGCTATTATTGGGGCTTGAGTACCTTCATAAGAATGGCATTATGCATCGGGATATAAAGGGTGCAAATATTCTTGTAGACAATAAAGGATGTATTAAACTCGCTGATTTTGGTGCATCCAAGAAAGTGGTTGAACTGGCAACTATAAATGGAGCCAAATCAATGAAGGGCACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGACATAGCTTCTCTGCTGATATATGGAGTGTGGGGTGTACTGTTATCGAAATGGCAACAGGGAAACCTCCATGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTCCATATAGGGAATACTAAATCCCATCCGCCCATTCCTGAGCACCTATCTGCTGAGGCAAAAGATTTTCTGTTAAAATGTTTACAAGAGGAACCAAACTCAAGGCCTACTGCATCAGACTTGCTGCAGCATCCATTTGTCTCATGTGAGTATCAAGACCCTCATGCAGCAGTCCGTGCCTCTTCCGTGGAATCTGGGAAACCGATGGTTGATTCTAGGCTAAATTCTAATGATCTAATAAATTCGACAATCCAACGTTCAACTGGCTTGAAGGATATTTGTGAAATGGGTAGCTTGAGGTGCTCTTCTGTATTTTCTGGGAATTATGGGTCACGGTCCAACTGGGGCTCAAGCAATTTTGAGGATGACATGTGCCAGATAGATGATAAAGATCTATTTGTTAGTTCATCAATAAAGTACAAATCTACTATATCATCACACGATTTGAATAAGAGTTTCAATCCTATGTGTGAACCAAATGATGACTGGGCATGTAAATTGGATGAGAGCTCAGAGTTGGGAGGCAATTTAATGGAATTGTCTGGCATTCAAACTGGCCAGGAATCTACTAGTAAGGGGAATGACTTCACTTTTCCATGTGGTCAATCCGCAGCTGAGGATGATGAAGAAGTTACAGAGTCAAAGATTAAAGCCTTTCTGGATGAGAAGGCTTTAGAACTGAAGAAGCTGCAAACACCTTTATATGAAGAGTTCCGCAGCACAATTAATGCAGCTAATGCTTTAGGAGCAGTTGGAACTGAGAATAGCAAGAGTGTATCTAATCTTCTGAAATTGCCTCCCAAATGTGGGTCACCAAGTAAGCTGCGTGGTAAAAGACTCTCATCAGTTGATGCTGCTAACTGTTCAAGCCGTCAGAGTCGTATAAAACAAGCTAGCATATTGCAAGATCGAGCTCTGCAGGAAATCCAGTCGCCTCAGCTTGGGGAATGGAACAAATTGCTTCATACACAGCCAGAGTCTTGCACGCCAAGTTTCTCTGAGAGACAAAGGAAATGGAAAGAAGAGCTTGAAGAAGAACTTAAAAGGAAGCGAGAGGTGGGGAGAAAAGGATATATATGGGGAAAAAAGTGTCTTCTCATGGTTACAATTGTTAGAAATGTATGTACACATTATCAGCAGCAGCAAAGTTCAGTAAAGGTGGATACTCCACATGCTGTTCATGGTCTCAGCACAGAGCACAATTCTCACAGGGAAGTTCAGGCATTTCAACTAGAAAAATCTGATAAGTAA 2091 43.42 MQDFFGSVRRSLVFLAPDGDDGGRFGGLVEKIGSSIRKSRNGLFSKHSVRALPPVVKEDAPPIWWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVSIAANSASREKAQAHIRELEEEVKLLKNLSHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGNTKSHPPIPEHLSAEAKDFLLKCLQEEPNSRPTASDLLQHPFVSCEYQDPHAAVRASSVESGKPMVDSRLNSNDLINSTIQRSTGLKDICEMGSLRCSSVFSGNYGSRSNWGSSNFEDDMCQIDDKDLFVSSSIKYKSTISSHDLNKSFNPMCEPNDDWACKLDESSELGGNLMELSGIQTGQESTSKGNDFTFPCGQSAAEDDEEVTESKIKAFLDEKALELKKLQTPLYEEFRSTINAANALGAVGTENSKSVSNLLKLPPKCGSPSKLRGKRLSSVDAANCSSRQSRIKQASILQDRALQEIQSPQLGEWNKLLHTQPESCTPSFSERQRKWKEELEEELKRKREVGRKGYIWGKKCLLMVTIVRNVCTHYQQQQSSVKVDTPHAVHGLSTEHNSHREVQAFQLEKSDK 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40265493 40270244 - Lag0016683.1 Lac12g2311 590908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2311 696 SUPERFAMILY Protein kinase-like (PK-like) 65 374 IPR011009 -
Lac12g2311 696 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524(InterPro)
Lac12g2311 696 ProSiteProfiles Protein kinase domain profile. 65 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2311 696 FunFam Mitogen-activated protein kinase kinase kinase 2 64 355 - -
Lac12g2311 696 CDD STKc_MAPKKK 65 327 - -
Lac12g2311 696 Pfam Protein kinase domain 66 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2311 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g2311 696 Gene3D Transferase(Phosphotransferase) domain 1 65 360 - -
Lac12g2311 696 FunFam Serine/threonine-protein kinase STE11 62 155 - -
Lac12g2311 696 SMART serkin_6 65 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2311 696 Coils Coil 98 125 - -
Lac12g2311 696 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 54 329 IPR050538 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0454 Lac-Chr11:4736736 Lac12g2311 Lac-Chr12:40265493 8.60E-61 dispersed
Lac12g2311 Lac-Chr12:40265493 Lac6g2641 Lac-Chr6:44160082 9.10E-210 dispersed
Lac12g2311 Lac-Chr12:40265493 Lac11g0043 Lac-Chr11:370305 1.10E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85825 PF00069 Pkinase 4.30E-73 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2311 K20606 - csv:101217427 1133.24