Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2326 ATGGAAATGGATCAGGTTGATTTGAGTGTTCGATTATCTGCGCTGTGGAACATCATTGGTCTAAAGAGAAGCCTTAAAGAAGACAGAATTCCTTGCCAAATTGAAGAGGGTCTGTTCTTAGGCTCTATTGGAGCTGCCCATAACAAGGATGAACTGAAGAAATTGAATATCACTCACATTTTAACTATTGCTTGTTCCTTGCCACCTGCTTATCCAAATGATTTTGCATATAAAGTAGTTGGTGTCTTGGACACTAGAGAGGCGGATATTAAAGGGCACTTCGACGATTGTTTTAATTTTATCGACGAAGGAAGACAATCTGGTGGAGGGGTCTTGGTTCATTGCTTTGCTGGAATATCCCGAAGTGTAACCATTACAGTTGCCTATCTGATGAAAAAGTGCGGTATGAATCTAACTCAAGCATTGGAACATGTCAAGAGTAGACGACCACAGGCTTCTCCGAACGTTGGTTTCATGGTTCAACTCAAGGACTTCGAAACGGCTCTTCAAGCTAGAAAAGAGGAAGGGATGAAGATGCCAAATGTTTGA 549 41.53 MEMDQVDLSVRLSALWNIIGLKRSLKEDRIPCQIEEGLFLGSIGAAHNKDELKKLNITHILTIACSLPPAYPNDFAYKVVGVLDTREADIKGHFDDCFNFIDEGRQSGGGVLVHCFAGISRSVTITVAYLMKKCGMNLTQALEHVKSRRPQASPNVGFMVQLKDFETALQARKEEGMKMPNV 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40394510 40396033 + Lag0016698.1 Lac12g2326 590923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2326 182 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 31 172 IPR029021 -
Lac12g2326 182 CDD DSP 31 164 - -
Lac12g2326 182 Gene3D Protein tyrosine phosphatase superfamily 24 179 IPR029021 -
Lac12g2326 182 FunFam Dual specificity phosphatase 12 32 179 - -
Lac12g2326 182 ProSiteProfiles Dual specificity protein phosphatase domain profile. 30 171 IPR020422 GO:0006470(InterPro)
Lac12g2326 182 SMART dsp_5 30 168 IPR020422 GO:0006470(InterPro)
Lac12g2326 182 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 31 169 - GO:0004721(PANTHER)|GO:0008330(PANTHER)|GO:0017017(PANTHER)|GO:0033550(PANTHER)|GO:0043409(PANTHER)
Lac12g2326 182 Pfam Dual specificity phosphatase, catalytic domain 38 167 IPR000340 GO:0016311(InterPro)
Lac12g2326 182 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 92 150 IPR000387 GO:0016311(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2326 Lac-Chr12:40394510 Lac7g1807 Lac-Chr7:24694939 4.90E-14 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2326 - - - 0.0