Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2338 ATGCAGTCATCTATAGATGTGGATTTCTTCACAGAATATGGTGAAGGGAGCAGGTATAGAATAGAGGAAGTAATTGGTAAAGGAAGTTATGGTGTTGTTTGCTCTGCATACGATACTCATACTGGGGACAAAGTTGCAATTAAGAAAATCAATGATATCTTTGAGCATGTCTCTGATGCAACTCGTATTCTTCGTGAGATAAAACTCTTAAGACTATTGAGACATCCAGACATTGTGGAGATAAAGCACATCCTACTACCTCCATCTAGAAGGGAATTCAAGGATATATATGTCGTGTTTGAGCTCATGGAGTCTGATTTACACCAAGTTATCAAGGCAAATGACGATTTGACTCCAGAACATTATCAGTTCTTTCTGTATCAGCTTCTTCGTGGCTTGAAATATATACACACAGCAAATGTCTTCCACCGGGACCTAAAACCCAAAAATATCTTAGCAAATGCTGACTGCAAACTCAAGATCTGTGACTTTGGTCTTGCAAGAGTTGCTTTTAATGATACTCCTACTGCTATTTTCTGGACTGACTATGTAGCAACAAGGTGGTACAGGGCTCCTGAACTGTGTGGTTCATTTTTCTCAAAGTATACACCAGCAATAGATATATGGAGCATCGGTTGCATCTTTGCGGAGCTTTTAACTGGAAAACCACTTTTCCCTGGAAAGAATGTCGTCCACCAATTAGATTTGATGACAGATTTTCTGGGAACTCCAAATGCAGAAGCCATAGCCAGGGTACGAAACGAGAAAGCTCGGAGATACTTAAGCAGTATGCGAAAGAAGAAGCCTGTTCCTTTCTCCCAGAAGTTTCCTCATGCAGATCCACTTGCACTTCGCTTATTGGAAAGAATGTTGGCTTTTGAGCCGAAGGATCGGCCTACAGCAGAGGAGGCCCTTGCAGATCCATATTTTAAAGGCTTGGCAAAGGTTGAGAGAGAACCATCGGCTCAACCTGTTACTAAGATGGAATTTGAATTTGAGAGACGAAGGATAACCAAAGAAGATGTTAGGGAGCTTATTTACCGCGAGATTCTCGAGTACCATCCAAAGATGTTGAAGGAATACTTAGATGGATCAGAACCTACCGGTTTCATGTATCCAAGTGCAGTTGATCATTTTAAGAAGCAGTTTGCCTACCTTGAGGAACACTATGGAAATGGTGCAACTGTTACTCCTCCTGAAAGACAACATGCATCCTTGCCTAGGCCATGTGTTTTATATTCAGATAGCATGGTGCAGAACTCGGCACAAGTTGCAAATGACCTATCCAAATGTTCCATCAAAGAAGTTGAAAGGCCACAAGTTGATAGGACTTGCAATATTCCTTTGACTAGAGTTCCTATTCAAGTTCCTCAATCTATTCAAGCAGGCAATGCTGCAAGGCCTGGGAAAGTTGTCGGCTCTGTGTTGCGATATAACAACTGTGGAGCAACCGCAGCAGTGGCACCAGAAGTTCTTGAGCAGAGAAGGATGACCAGAAACCCTTCTGTTCCACCGCAGTACGCCGCTAACAACTGTTCATATCCACGAAGAAACTCATCTTGTAAAAATGAAAGGACTGAAGATGAAGCCATTGAAGGTCCAAACGGGTTGCAGCCAAAACCTCAGTTCATAGCTAGGAAAGTTGCTGCTGCTCAAGGCGGACCAGGAAATAACTGGTACTGA 1683 42.54 MQSSIDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHTGDKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPNAEAIARVRNEKARRYLSSMRKKKPVPFSQKFPHADPLALRLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEYLDGSEPTGFMYPSAVDHFKKQFAYLEEHYGNGATVTPPERQHASLPRPCVLYSDSMVQNSAQVANDLSKCSIKEVERPQVDRTCNIPLTRVPIQVPQSIQAGNAARPGKVVGSVLRYNNCGATAAVAPEVLEQRRMTRNPSVPPQYAANNCSYPRRNSSCKNERTEDEAIEGPNGLQPKPQFIARKVAAAQGGPGNNWY 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40554997 40559409 + Lag0016710.1 Lac12g2338 590935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2338 560 SMART serkin_6 19 310 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2338 560 FunFam Mitogen-activated protein kinase 105 333 - -
Lac12g2338 560 MobiDBLite consensus disorder prediction 498 539 - -
Lac12g2338 560 MobiDBLite consensus disorder prediction 499 519 - -
Lac12g2338 560 FunFam Mitogen-activated protein kinase 9 113 - -
Lac12g2338 560 Pfam Protein kinase domain 19 310 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2338 560 SUPERFAMILY Protein kinase-like (PK-like) 16 314 IPR011009 -
Lac12g2338 560 ProSitePatterns MAP kinase signature. 54 157 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2338 560 CDD STKc_TDY_MAPK 18 355 - -
Lac12g2338 560 ProSiteProfiles Protein kinase domain profile. 19 310 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2338 560 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 17 351 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lac12g2338 560 Gene3D Phosphorylase Kinase; domain 1 34 355 - -
Lac12g2338 560 ProSitePatterns Protein kinases ATP-binding region signature. 25 49 IPR017441 GO:0005524(InterPro)
Lac12g2338 560 Gene3D Transferase(Phosphotransferase) domain 1 105 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0862 Lac-Chr12:8924073 Lac12g2338 Lac-Chr12:40554997 1.20E-206 dispersed
Lac12g2338 Lac-Chr12:40554997 Lac3g0430 Lac-Chr3:3293053 1.50E-207 dispersed
Lac12g2338 Lac-Chr12:40554997 Lac9g2254 Lac-Chr9:41888913 1.90E-210 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85826 PF00069 Pkinase 7.00E-68 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2338 - - - 0.0