Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2348 ATGTCAGCGACGAAGAGATTGAAAGTTCATCCCAACACAATGCGAGGCCATGATTGGATCAATACCGTCCTTCCTGATGAGCTGATCGTTGAGATCTTCCGATGCCTTGACTCGAAGCTGAGTCGCGATGCTTGTTCTCTCGTCTGCAGGCGTTGGCTCAAGCTCGAGCGCCTCAGCAGAACCACTCTACGAATCGGTGCAACTGGTAGCCCCGACCTCTTTGTGCAGCTTCTTGCTCGCCGTTTCGTCAATGTCAGAAATGTCCACATTGACGAGCGCTTGGCGATTTCTCTTCCCCTTCTTCCAGGAAGAAGACGTCGAAATGAAGCCATGCGCTTGGGATTTAAATCACACCATGCAACTGATAATACCGGGACTGAAGGTGCGCTGGAGTCTTCTTGTCTGTCCGATGCTGGGCTAATTGCTCTCTCCGTAGGTTTTCCAAACCTCGAGAAACTGAGCTTAATTTGGTGCTCTAACATTTCAAGTCAGGGTTTGACATCCCTTGCTGAGAAGTGTAGATTTTTGAAATCACTGGATCTACAGGGTTGCTATGTTGGGGACCGAGGTGTAGCTGCAGTTGGGGAATTCTGTAAACAACTTGAAGATGTTAACTTGCGTTTTTGTGAAGGGTTGACTGATACTGGTTTGGTTGAATTAGCCCGTGGGTGTGGGAAATCATTGAAAGCATTTGGTATTGCAGCTTGTGCCAAAATAACGGATGTCTCATTAGAAGCTCTGGGAATGCACTGCAAATATCTGGAGTCCTTGTCACTAGATTCAGAAATTATCCACAACAAAGGGGTGCTTTCTGTAGCCCAAGGATGCCCACTTCTGAAAGCTTTGAAGCTACAGTGTACAAATGTCACGGATGAAGCCTTGGTAGCTGTAGGCTCCTTATGTCCTTCTCTGGAATTATTGGCTTTATACAGTTTTCAAGAATTTACTGACAAGGGATTACATGCCATTGGAGTAGGCTGCAAGAAGTTAAAAAATCTCACTCTAAGTGATTGCTATTTCCTGAGCGATATAGGCTTGGAAGCAGTTGCAGCTGGTTGTAAAGGACTAACACATCTTGAAGTTAACGGCTGCCACAACATTGGAACCATGGGACTAGAATCCATCGGAAAATCTTGCCCCCAGCTCACTGAATTGGCTTTGCTGTATTGCCAAAAGATTGTTAACTCTGGTCTTCTTGGAATTGGTCAAAGTTGCAAGTTCTTACAAGCGCTCCACTTGGTAGATTGCTCGAGAATTGGAGATGAAGCAATATGTGGCATAGCCAAAGGATGCAGAAATTTGAAGAAACTTCACATTCGTCGATGTTATGAGATTGGGAATGCAGGAATTATAGCTATTGGTGAGAATTGCAAATTCCTCACGGATTTGAGCCTCAGATTTTGTGACAGGGTTGGTGATGAGGCGCTTATTGCCATTGGCCAGGGTTGTTCCCTTCATCAGCTGAATGTTAGTGGGTGCCACCGTATTGGCGATGCGGGCATTGCAGCCATTGCTAGAGGTTGTCCTCAATTGAGTCACTTGGATGTAAGCGTTCTCGAGAACTTGGGGGATATGGCAATGGCTGAGCTAGGGGAAGGTTGTCCCTTGCTTAAAGACATAGTACTGTCTCACTGTCACCAGATAACGGATGCGGGTATAATGCATTTAGTGAAGAGATGCACCATGCTCGAATCCTGTCACATGGTCTATTGTCCCGGCATCACTGCAGCTGGGGTTGCCACCGTCGTTTCCAGCTGCCCGAGCATAAAGAAAGTTCTGGTTGAGAAATGGAAGGTGAGTGAGAGAACGAAACGACGGGCAGGCTCGGTCATTTCCTACCTTTGCGTGGACCTGTAG 1857 46.69 MSATKRLKVHPNTMRGHDWINTVLPDELIVEIFRCLDSKLSRDACSLVCRRWLKLERLSRTTLRIGATGSPDLFVQLLARRFVNVRNVHIDERLAISLPLLPGRRRRNEAMRLGFKSHHATDNTGTEGALESSCLSDAGLIALSVGFPNLEKLSLIWCSNISSQGLTSLAEKCRFLKSLDLQGCYVGDRGVAAVGEFCKQLEDVNLRFCEGLTDTGLVELARGCGKSLKAFGIAACAKITDVSLEALGMHCKYLESLSLDSEIIHNKGVLSVAQGCPLLKALKLQCTNVTDEALVAVGSLCPSLELLALYSFQEFTDKGLHAIGVGCKKLKNLTLSDCYFLSDIGLEAVAAGCKGLTHLEVNGCHNIGTMGLESIGKSCPQLTELALLYCQKIVNSGLLGIGQSCKFLQALHLVDCSRIGDEAICGIAKGCRNLKKLHIRRCYEIGNAGIIAIGENCKFLTDLSLRFCDRVGDEALIAIGQGCSLHQLNVSGCHRIGDAGIAAIARGCPQLSHLDVSVLENLGDMAMAELGEGCPLLKDIVLSHCHQITDAGIMHLVKRCTMLESCHMVYCPGITAAGVATVVSSCPSIKKVLVEKWKVSERTKRRAGSVISYLCVDL 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40641627 40646697 + Lag0016720.1 Lac12g2348 590945

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2348 618 Gene3D Ribonuclease Inhibitor 270 364 IPR032675 -
Lac12g2348 618 SUPERFAMILY RNI-like 352 599 - -
Lac12g2348 618 Pfam F-box 24 61 IPR041567 -
Lac12g2348 618 Gene3D Ribonuclease Inhibitor 15 263 IPR032675 -
Lac12g2348 618 FunFam F-box/LRR-repeat protein 4 130 367 - -
Lac12g2348 618 SUPERFAMILY RNI-like 133 369 - -
Lac12g2348 618 SUPERFAMILY F-box domain 16 55 IPR036047 GO:0005515(InterPro)
Lac12g2348 618 CDD F-box_AtTIR1-like 24 60 - -
Lac12g2348 618 FunFam F-box/LRR-repeat protein 4 368 618 - -
Lac12g2348 618 FunFam F-box/LRR-repeat protein 4 21 60 - -
Lac12g2348 618 Gene3D Ribonuclease Inhibitor 365 618 IPR032675 -
Lac12g2348 618 Pfam Leucine Rich repeat 201 221 IPR001611 GO:0005515(InterPro)
Lac12g2348 618 Pfam Leucine Rich repeat 276 297 IPR001611 GO:0005515(InterPro)
Lac12g2348 618 Pfam Leucine Rich repeat 431 453 IPR001611 GO:0005515(InterPro)
Lac12g2348 618 Pfam Leucine Rich repeat 534 554 IPR001611 GO:0005515(InterPro)
Lac12g2348 618 Pfam Leucine Rich repeat 483 505 IPR001611 GO:0005515(InterPro)
Lac12g2348 618 Pfam Leucine Rich repeat 457 479 IPR001611 GO:0005515(InterPro)
Lac12g2348 618 Pfam Leucine Rich repeat 172 194 IPR001611 GO:0005515(InterPro)
Lac12g2348 618 PANTHER UNCHARACTERIZED 24 405 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Lac12g2348 618 SMART LRR_CC_2 251 275 IPR006553 -
Lac12g2348 618 SMART LRR_CC_2 327 352 IPR006553 -
Lac12g2348 618 SMART LRR_CC_2 198 223 IPR006553 -
Lac12g2348 618 SMART LRR_CC_2 508 533 IPR006553 -
Lac12g2348 618 SMART LRR_CC_2 225 250 IPR006553 -
Lac12g2348 618 SMART LRR_CC_2 560 585 IPR006553 -
Lac12g2348 618 SMART LRR_CC_2 431 456 IPR006553 -
Lac12g2348 618 SMART LRR_CC_2 301 326 IPR006553 -
Lac12g2348 618 SMART LRR_CC_2 457 482 IPR006553 -
Lac12g2348 618 SMART LRR_CC_2 534 559 IPR006553 -
Lac12g2348 618 SMART LRR_CC_2 353 378 IPR006553 -
Lac12g2348 618 SMART LRR_CC_2 147 172 IPR006553 -
Lac12g2348 618 SMART LRR_CC_2 173 197 IPR006553 -
Lac12g2348 618 SMART LRR_CC_2 276 300 IPR006553 -
Lac12g2348 618 SMART LRR_CC_2 483 507 IPR006553 -
Lac12g2348 618 SMART LRR_CC_2 379 404 IPR006553 -
Lac12g2348 618 SMART LRR_CC_2 405 430 IPR006553 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2348 K10268 - - csv:101216664 1112.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2348 Lac-Chr12:40641627 Lac2g0353 Lac-Chr2:2666035 3.60E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g405 . . Bda03g01248 . . Bpe14g01357 . . Cmo08g01154 Cmo17g00271 . . . . . . . . . . . . . . Cla06g00531 Cam06g0572 Cec06g0570 Cco06g0578 Clacu06g0560 Cmu06g0554 Cre06g1322 . Cone15ag0808 . . . . Chy11g01444 . . . . . . . . . Sed06g0516 . . Cma08g01183 . Car08g01059 Car17g00259 Cpe12g00236 Cpe17g00113 Bhi12g01780 Tan06g2588 Cmetu07g1857 Lac12g2348 . . . . . . . . . . . . . Cme11g01949
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010433 1 1 0 1 1 1 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 2 1 32