Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2352 ATGGGTTGTATCCATACAAAATGTTGCTGTCGCTACCCAAAATCTTTGGTTGGAGAATCCCAAGACTTTCGGCAAGGGGTTCCTTACTGTCTACAAGATAAGAACACTGTGATAGAAAGATCATTGGAGTTTATTCCTGTTGCTTCCCACAACTATCATTTGGAATACTTGGTTCTGGCTCAGCGTGGTTACTACCCTGAATCTCCTGATAAAGAAAACCAAGACAGTTTCTGCATTAGAACAAATATACAAGGTAACCCAAATGTCCATTTCTTTGGTGTTTTTGATGGGCATGGTCAATTTGGGATGCAGTGTTCAAATTTTGTGAAGGATAGGCTTATAGAAAAGCTATGTAATGATCCCACATTGTTAGATGATCCTGTACAAGCTTATAATTCAGCATTTATATCCACAAATGATGAGTTGCATACAAGTGAGATAGATGATTCCATGAGTGGAACAACTGCAATTACAGTCCTTGTTGTTGGGGACACTCTCTATGTGGCCAATGTGGGTGATTCAAGAGCTGTAATTGCAGTTAAAGAAGGGAATTGTGTCCTTGCCAAGGACTTGTCAAATGATCAGACACCATTTAGAAAAGATGAGTATGAGAGAGTTAAGCTTTGTGGGGCTAGAGTTCTGAGTGTTGATCAAGTGGAAGGACTTGTGGATCCTGATATTCAGTGCTGGGGCGACGAAGAAAGTCAAGGTGGCGATCCGCCTCGACTGTGGGTTCAAAATGGCTTGTATCCTGGGACTGCATTTACCAGGAGCATAGGTGATAGTACTGCAGAGAAGATTGGTGTAAATGCCATTCCTGAGGTTTTAGTTCTTCAGCTTAACCCCAATCATCTTTTCTTTGTGGTTGCCAGTGATGGAGTTTTCGAGTTCCTTTCAAGTCAAACTGTTGTTGATATGGCATCAAGTTATGCAGATCCTCAAGATGCATGTACTGCCATTGCTGCCGAGTCGTATAAACTATGGATGGAACATGAAAATCGAACCGATGATATAACGATCATTATTGTTCATATCAAAGGCTTGTCTAATGTATGA 1056 41.0 MGCIHTKCCCRYPKSLVGESQDFRQGVPYCLQDKNTVIERSLEFIPVASHNYHLEYLVLAQRGYYPESPDKENQDSFCIRTNIQGNPNVHFFGVFDGHGQFGMQCSNFVKDRLIEKLCNDPTLLDDPVQAYNSAFISTNDELHTSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVKEGNCVLAKDLSNDQTPFRKDEYERVKLCGARVLSVDQVEGLVDPDIQCWGDEESQGGDPPRLWVQNGLYPGTAFTRSIGDSTAEKIGVNAIPEVLVLQLNPNHLFFVVASDGVFEFLSSQTVVDMASSYADPQDACTAIAAESYKLWMEHENRTDDITIIIVHIKGLSNV 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40678509 40679964 + Lag0016724.1 Lac12g2352 590949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2352 351 Gene3D - 49 347 IPR036457 -
Lac12g2352 351 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Lac12g2352 351 SUPERFAMILY PP2C-like 48 347 IPR036457 -
Lac12g2352 351 PANTHER PROTEIN PHOSPHATASE 61 343 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac12g2352 351 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 347 - -
Lac12g2352 351 Pfam Protein phosphatase 2C 72 323 IPR001932 -
Lac12g2352 351 CDD PP2Cc 71 345 IPR001932 -
Lac12g2352 351 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169(InterPro)
Lac12g2352 351 SMART PP2C_4 56 343 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2352 Lac-Chr12:40678509 Lac9g2142 Lac-Chr9:40949550 8.50E-23 dispersed
Lac3g0935 Lac-Chr3:7555462 Lac12g2352 Lac-Chr12:40678509 2.80E-117 transposed
Lac12g2352 Lac-Chr12:40678509 Lac7g0812 Lac-Chr7:6494413 1.40E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2352 - - - 0.0