Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2368 ATGAGAGCTTCAAATCATGGCTTCTTCTCTGTACTGGTTTTCAGTACTCTCATTGCTCTTCAAGTCGTCAATGGCGCTGCTTTGATCAACAATTTCTATAGGCGAAGCTGCCCCCGAGCTGAGAAAATCGTCCGAGACGTCACCTTTCAGCTCACTCGATCGAATCGCGGTCTCGGCGCTCAACTCCTGAGAGTTCAGTTCCATGACTGCTTCGTTCGGGGATGCGATGCATCAATTCTGTTAGATACGGTCGGAGGAAACCAATCGGAGAAGGACGCAAGGCCGAACCTGTCGCTGTTAGGGTTTGACGCCATCGACAAAATCAAGTCGGAGGTTGAGAAAGCTTGCCCCGGAGTTGTTTCTTGTGCTGACATTCTTGCCCTAGCTGCTCGTGACGCCGTTTCCTTTCCGTTCAAAAACCGGCCACTGTGGCCAGTCTTAACCGGAAGAAGAGACGGAAGTGTTTCGCGTTTATCAGAAGTTACCGGAAACATCCCGTCGCCGTTCTCCGATTTTGCCACTCTTAAGCAAGTCTTCGAGAAGAAGGGGCTTACAGTGAGCGATCTGGTGATTTTATCAGGTGGGCATACAATTGGAGTAGCTCATTGTGGCACTTTCTCAAGGAGGCTGTACAACTTCACAGGCAAAGGAGATGCAGATCCTTCATTAAATCCAATCTACGCCAACATCCTTAGAAGACAATGTCCAAATCCAGCTGACCCTTCAATCACAGTAGAAATGGATCCAAGAAGTTCACGTTCATTTGACACTGACTATTTCAAAATCCTCACACAGCACAAAGGTTTGTTTCAATCCGACGCCGCGCTTCTCACCGACCCCTCGTCGTCTCGAATCGTCGAGCAGCTGCAGAATCCGAGAGCTTTCTTCCCTAGCTTTGCTGATTCCATGTTGAAGATGGCAGCCATTGAAGTCCTCACTGGAACTGATGGTGAAATTAGGAAACGATGTCGTTTTGTTAATTGA 984 48.37 MRASNHGFFSVLVFSTLIALQVVNGAALINNFYRRSCPRAEKIVRDVTFQLTRSNRGLGAQLLRVQFHDCFVRGCDASILLDTVGGNQSEKDARPNLSLLGFDAIDKIKSEVEKACPGVVSCADILALAARDAVSFPFKNRPLWPVLTGRRDGSVSRLSEVTGNIPSPFSDFATLKQVFEKKGLTVSDLVILSGGHTIGVAHCGTFSRRLYNFTGKGDADPSLNPIYANILRRQCPNPADPSITVEMDPRSSRSFDTDYFKILTQHKGLFQSDAALLTDPSSSRIVEQLQNPRAFFPSFADSMLKMAAIEVLTGTDGEIRKRCRFVN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40798105 40800922 - Lag0016740.1 Lac12g2368 590965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2368 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 188 198 IPR019793 -
Lac12g2368 327 Gene3D Peroxidase, domain 2 166 306 - -
Lac12g2368 327 ProSiteProfiles Plant heme peroxidase family profile. 27 327 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g2368 327 FunFam Peroxidase 166 306 - -
Lac12g2368 327 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601(InterPro)
Lac12g2368 327 PANTHER PEROXIDASE 25-RELATED 29 323 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Lac12g2368 327 FunFam Peroxidase 31 178 - -
Lac12g2368 327 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g2368 327 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g2368 327 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g2368 327 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g2368 327 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g2368 327 CDD secretory_peroxidase 31 326 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac12g2368 327 Pfam Peroxidase 44 290 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g2368 327 SUPERFAMILY Heme-dependent peroxidases 29 327 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g2368 327 Gene3D - 31 327 - -
Lac12g2368 327 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g2368 327 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g2368 327 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g2368 327 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g2368 327 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g2368 327 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g2368 327 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac12g2368 327 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2368 Lac-Chr12:40798105 Lac9g2070 Lac-Chr9:40326885 2.10E-79 dispersed
Lac12g2368 Lac-Chr12:40798105 Lac12g0621 Lac-Chr12:6575020 5.00E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2368 K00430 - csv:101215642 530.791