Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2377 ATGGCGGCTGCAATGATAGTCGAATCAGGCTCGTCGATGGTGAATTTTGGGATGGAGTTGGTAGCGGATCATACTTCGGTGGTTTCTTTGAACTTATTCGTAGCTCTTCTTTGTGGTTGCATTGTTATCGGCCATTTGTTAGAGGAAAATCGATGGATCAACGAGTCCATTATAGCGCTTGTCATTGGATTGTGTACCGGCATCATAATTTTGCTAACAACTAGAGGGAAAAGCTCGCATTTATTTTTGTTCAATGAAGAGCTTTTCTTTATTTATCTCCTTCCGCCGATCATTTTCAATGCCGGGTTCCAGGTCAAGAAGAAGCAGTTTTTCCGCAACATCATGACCATAGTGCTTTTTGGTGCTTTTGGCACTCTCATATCATTCTGTATTATATCATTAGGCGCTTTGCACTTCTTCCAGAAAATGAATATTGGTTCCCTTGATCTTGGAGATTATCTAGCCATTGGAGCTATTTTTTCTGCAACAGACTCTGTTTGCACCTTACAGGTTCTTAATCAGGATGAGACCCCTCTTCTGTATAGCCTGGTTTTTGGTGAGGGTGTTGTAAATGACGCCACATCAGTTGTGCTATTCAATGCTATCCAGAACTTTGATCTTTCTCACATGAATTCAAGCATTGTTCTGCAATTCATAGGGAACTTTTTGTATCTGTTTATTGCAAGCACTGTGCTGGGAATTTTAGTTGGTCTCCTTAGTGCATTCATAATTAAGAAGCTTTACTTTGGCAGGCATTCTACTGATCGTGAAGTTGCTCTTATGATACTCATGGCGTATTTCTCTTATATGCTAGCTGAACTCTTCTATTTAAGTGCAATTCTCACTGTATTCTTTTGCGGTATTGTTATGTCTCATTATACATGGCATAACGTGACTGAAAGTTCAAGAGTCACTACAAAGCATGCTTTTGCCACACTTTCTTTTGTTGCTGAGATCTTTATCTTTCTTTACGTTGGCATGGATGCTCTTGACATTGAGAAGTGGAGATTTGTTAGCCACAGTCCCGGGAAATCCATTGGGGTGAGCTCAATACTGTTGGGATTGGTTCTTGTTGGAAGAGCAGCCTTCGTTTTTCCATTATCCTCCTTATCCAATCTGACCAAGAAGTCCTCGCACGAAAAACTCAACTTGGAACAACAAGTCACTATTTGGTGGGCTGGTCTCATGCGTGGTGCTGTATCAATGGCACTTGCATATAATCAGTTCACCAGGTCAGGCCACACCCATTTACCAGGCAATGCAATCATGATCACCAGTACCATCACAGTTGTTCTTTCCAGTACAGTGGTATTTGGAATGATGACGAAACCCCTCATAGGAATTCTGCTACCCCAACCAAAATACTCGATGAGCATGGTGTCTTCCGAGCCGTCTTCCCCAAAATCGTTCACAGTCCCACTCCTCACCAATGACCCAAACAGCCCATCCCTCTGGGCCTATTCCTCCGAATCCCAGCCCACACGGTTCACCATTACTGGCGGAGATTCGACGACGCCTTCATGCGCCCTGTCTTTGGAGGGCGGGGCTTCGTGCCCTTCGTCCCGGGCTCCCCTACCGAAGAGCCCACACAACAATGGCAAACTGAGGGAGCACTGGAAGCCATTGATGACAGTAAAACCATTCTTATACAGACTCGAAGGTGAAATTGAAGAACAAGGACGAGGCCTACTCTGTCCTGATTTCAAGGGGTAA 1713 44.07 MAAAMIVESGSSMVNFGMELVADHTSVVSLNLFVALLCGCIVIGHLLEENRWINESIIALVIGLCTGIIILLTTRGKSSHLFLFNEELFFIYLLPPIIFNAGFQVKKKQFFRNIMTIVLFGAFGTLISFCIISLGALHFFQKMNIGSLDLGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQNFDLSHMNSSIVLQFIGNFLYLFIASTVLGILVGLLSAFIIKKLYFGRHSTDREVALMILMAYFSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSHSPGKSIGVSSILLGLVLVGRAAFVFPLSSLSNLTKKSSHEKLNLEQQVTIWWAGLMRGAVSMALAYNQFTRSGHTHLPGNAIMITSTITVVLSSTVVFGMMTKPLIGILLPQPKYSMSMVSSEPSSPKSFTVPLLTNDPNSPSLWAYSSESQPTRFTITGGDSTTPSCALSLEGGASCPSSRAPLPKSPHNNGKLREHWKPLMTVKPFLYRLEGEIEEQGRGLLCPDFKG 570
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 40873218 40879528 - Lag0016749.1 Lac12g2377 590974
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2377 570 PANTHER SODIUM/HYDROGEN EXCHANGER 26 450 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
Lac12g2377 570 MobiDBLite consensus disorder prediction 513 535 - -
Lac12g2377 570 Pfam Sodium/hydrogen exchanger family 34 445 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Lac12g2377 570 PRINTS Na+/H+ exchanger signature 117 125 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac12g2377 570 PRINTS Na+/H+ exchanger signature 157 167 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac12g2377 570 PRINTS Na+/H+ exchanger signature 88 99 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac12g2377 570 PRINTS Na+/H+ exchanger signature 102 116 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac12g2377 570 Gene3D - 150 201 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2377 Lac-Chr12:40873218 Lac4g2363 Lac-Chr4:43253525 5.20E-179 dispersed
Lac10g1601 Lac-Chr10:16996695 Lac12g2377 Lac-Chr12:40873218 6.50E-22 transposed
Lac2g1460 Lac-Chr2:12537854 Lac12g2377 Lac-Chr12:40873218 5.60E-73 transposed
Lac3g2313 Lac-Chr3:32055108 Lac12g2377 Lac-Chr12:40873218 7.00E-194 transposed
Lac12g2377 Lac-Chr12:40873218 Lac4g2362 Lac-Chr4:43243000 6.00E-151 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2377 - - - 0.0