Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac12g2377 | ATGGCGGCTGCAATGATAGTCGAATCAGGCTCGTCGATGGTGAATTTTGGGATGGAGTTGGTAGCGGATCATACTTCGGTGGTTTCTTTGAACTTATTCGTAGCTCTTCTTTGTGGTTGCATTGTTATCGGCCATTTGTTAGAGGAAAATCGATGGATCAACGAGTCCATTATAGCGCTTGTCATTGGATTGTGTACCGGCATCATAATTTTGCTAACAACTAGAGGGAAAAGCTCGCATTTATTTTTGTTCAATGAAGAGCTTTTCTTTATTTATCTCCTTCCGCCGATCATTTTCAATGCCGGGTTCCAGGTCAAGAAGAAGCAGTTTTTCCGCAACATCATGACCATAGTGCTTTTTGGTGCTTTTGGCACTCTCATATCATTCTGTATTATATCATTAGGCGCTTTGCACTTCTTCCAGAAAATGAATATTGGTTCCCTTGATCTTGGAGATTATCTAGCCATTGGAGCTATTTTTTCTGCAACAGACTCTGTTTGCACCTTACAGGTTCTTAATCAGGATGAGACCCCTCTTCTGTATAGCCTGGTTTTTGGTGAGGGTGTTGTAAATGACGCCACATCAGTTGTGCTATTCAATGCTATCCAGAACTTTGATCTTTCTCACATGAATTCAAGCATTGTTCTGCAATTCATAGGGAACTTTTTGTATCTGTTTATTGCAAGCACTGTGCTGGGAATTTTAGTTGGTCTCCTTAGTGCATTCATAATTAAGAAGCTTTACTTTGGCAGGCATTCTACTGATCGTGAAGTTGCTCTTATGATACTCATGGCGTATTTCTCTTATATGCTAGCTGAACTCTTCTATTTAAGTGCAATTCTCACTGTATTCTTTTGCGGTATTGTTATGTCTCATTATACATGGCATAACGTGACTGAAAGTTCAAGAGTCACTACAAAGCATGCTTTTGCCACACTTTCTTTTGTTGCTGAGATCTTTATCTTTCTTTACGTTGGCATGGATGCTCTTGACATTGAGAAGTGGAGATTTGTTAGCCACAGTCCCGGGAAATCCATTGGGGTGAGCTCAATACTGTTGGGATTGGTTCTTGTTGGAAGAGCAGCCTTCGTTTTTCCATTATCCTCCTTATCCAATCTGACCAAGAAGTCCTCGCACGAAAAACTCAACTTGGAACAACAAGTCACTATTTGGTGGGCTGGTCTCATGCGTGGTGCTGTATCAATGGCACTTGCATATAATCAGTTCACCAGGTCAGGCCACACCCATTTACCAGGCAATGCAATCATGATCACCAGTACCATCACAGTTGTTCTTTCCAGTACAGTGGTATTTGGAATGATGACGAAACCCCTCATAGGAATTCTGCTACCCCAACCAAAATACTCGATGAGCATGGTGTCTTCCGAGCCGTCTTCCCCAAAATCGTTCACAGTCCCACTCCTCACCAATGACCCAAACAGCCCATCCCTCTGGGCCTATTCCTCCGAATCCCAGCCCACACGGTTCACCATTACTGGCGGAGATTCGACGACGCCTTCATGCGCCCTGTCTTTGGAGGGCGGGGCTTCGTGCCCTTCGTCCCGGGCTCCCCTACCGAAGAGCCCACACAACAATGGCAAACTGAGGGAGCACTGGAAGCCATTGATGACAGTAAAACCATTCTTATACAGACTCGAAGGTGAAATTGAAGAACAAGGACGAGGCCTACTCTGTCCTGATTTCAAGGGGTAA | 1713 | 44.07 | MAAAMIVESGSSMVNFGMELVADHTSVVSLNLFVALLCGCIVIGHLLEENRWINESIIALVIGLCTGIIILLTTRGKSSHLFLFNEELFFIYLLPPIIFNAGFQVKKKQFFRNIMTIVLFGAFGTLISFCIISLGALHFFQKMNIGSLDLGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQNFDLSHMNSSIVLQFIGNFLYLFIASTVLGILVGLLSAFIIKKLYFGRHSTDREVALMILMAYFSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSHSPGKSIGVSSILLGLVLVGRAAFVFPLSSLSNLTKKSSHEKLNLEQQVTIWWAGLMRGAVSMALAYNQFTRSGHTHLPGNAIMITSTITVVLSSTVVFGMMTKPLIGILLPQPKYSMSMVSSEPSSPKSFTVPLLTNDPNSPSLWAYSSESQPTRFTITGGDSTTPSCALSLEGGASCPSSRAPLPKSPHNNGKLREHWKPLMTVKPFLYRLEGEIEEQGRGLLCPDFKG | 570 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 40873218 | 40879528 | - | Lag0016749.1 | Lac12g2377 | 590974 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac12g2377 | 570 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 26 | 450 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Lac12g2377 | 570 | MobiDBLite | consensus disorder prediction | 513 | 535 | - | - | |
| Lac12g2377 | 570 | Pfam | Sodium/hydrogen exchanger family | 34 | 445 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Lac12g2377 | 570 | PRINTS | Na+/H+ exchanger signature | 117 | 125 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac12g2377 | 570 | PRINTS | Na+/H+ exchanger signature | 157 | 167 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac12g2377 | 570 | PRINTS | Na+/H+ exchanger signature | 88 | 99 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac12g2377 | 570 | PRINTS | Na+/H+ exchanger signature | 102 | 116 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac12g2377 | 570 | Gene3D | - | 150 | 201 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g2377 | Lac-Chr12:40873218 | Lac4g2363 | Lac-Chr4:43253525 | 5.20E-179 | dispersed | |
| Lac10g1601 | Lac-Chr10:16996695 | Lac12g2377 | Lac-Chr12:40873218 | 6.50E-22 | transposed | |
| Lac2g1460 | Lac-Chr2:12537854 | Lac12g2377 | Lac-Chr12:40873218 | 5.60E-73 | transposed | |
| Lac3g2313 | Lac-Chr3:32055108 | Lac12g2377 | Lac-Chr12:40873218 | 7.00E-194 | transposed | |
| Lac12g2377 | Lac-Chr12:40873218 | Lac4g2362 | Lac-Chr4:43243000 | 6.00E-151 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac12g2377 | - | - | - | 0.0 |