Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2379 ATGTCGCTGAAGAGCATCTTTCAAGATATGAGGTCCCGGTCCCGCCGCGTGGTGCAGGACGGCTCGGCGCCGGAGCCGAGGGACGGCCTCGACCAGAGCTGTTGGGCCAATATGCCTCAGGAGCTTCTCAGGGAGGTTCTGATGAGAATCGAGGCGTCCGAGACCTCCTGGCCGCCGAGGAAGAGTGTCGTCGCTTGCGCCGGAGTGTGCCGGAGCTGGCGAGCCATTACTAAGGAGATCGTCAAAACGCCGGAGGTTTCCGGCAGGTTGACGTTCCCGATCTCTATCAAGCAGCCTGGTCCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTCTTCCTCAGTCTTACTAATGCACTGAGTGACGATGGTAAATTTCTACTTGCTGCTCGTAAATGCAAGCGCCCGACCTACACAGATTATATTATCTCTTTACATGCTGAGGATTTGTCGAAGGGGAGCAGCACCTATGTTGGGAAATTGAGATCTAATTTCCTAGGAACCAAGTTCACAATCTTTGATGGGCAACCACCACATTCCGGAGCCAAGATCACAAAAAGTCGCTCCACAAGGCTAGTGAATCTGAAACAAGTTTCGCCCAAGGTTCCTGCAGGGAACTATCCAGTTGCCCACATTTCATATGAACTAAATGTGTTGGGATCAAGATGTCTAGCAAATGCTAAAAAGTTGATGTCATTAACAAGCAGGGGTCCAAGGAGAATGCAGTGTATCATGGACGCCATTCCCGCTTCCGCAGTTGAACCTGGAGGAGTGGCTCCCACACAGACCGAGCTTTCTTTAAGCAACGTGGAATTGTTTCCATCGTTCCCATTCCTAAGGTCAAAATCAAATGCGGATAGCTTGCTTTCTGAACCTTTGGGCAGTCAGAAAGATGGAATGCTGGTGCTGAGAAACAAGACTCCCCGGTGGCACGAGCAGCTTCAGTGCTGGTGTTTGAACTTTCATGGAAGAGTTACTATTGCTTCCGTGAAAAATTTTCAACTAGTCGCTTCTTCGGAAAATGAACCACCTACACAAGAACATGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCGTTACCCGATCTCCGCTTTCCAGGCTTTTGCAATCTGCCTCAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1203 48.71 MSLKSIFQDMRSRSRRVVQDGSAPEPRDGLDQSCWANMPQELLREVLMRIEASETSWPPRKSVVACAGVCRSWRAITKEIVKTPEVSGRLTFPISIKQPGPRDPLLQCFIKRNRSNQTYYLFLSLTNALSDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRCLANAKKLMSLTSRGPRRMQCIMDAIPASAVEPGGVAPTQTELSLSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASSENEPPTQEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40902928 40905205 + Lag0016751.1 Lac12g2379 590976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2379 400 CDD F-box_AtTLP-like 35 79 - -
Lac12g2379 400 ProSitePatterns Tub family signature 2. 385 400 IPR018066 -
Lac12g2379 400 Gene3D Tubby Protein; Chain A 93 400 IPR025659 -
Lac12g2379 400 MobiDBLite consensus disorder prediction 1 32 - -
Lac12g2379 400 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Lac12g2379 400 PRINTS Tubby superfamily signature 330 346 IPR000007 -
Lac12g2379 400 PRINTS Tubby superfamily signature 312 329 IPR000007 -
Lac12g2379 400 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Lac12g2379 400 PRINTS Tubby superfamily signature 357 376 IPR000007 -
Lac12g2379 400 PRINTS Tubby superfamily signature 378 400 IPR000007 -
Lac12g2379 400 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Lac12g2379 400 Pfam F-box domain 35 78 IPR001810 GO:0005515(InterPro)
Lac12g2379 400 FunFam Tubby-like F-box protein 92 400 - -
Lac12g2379 400 ProSitePatterns Tub family signature 1. 330 343 IPR018066 -
Lac12g2379 400 Pfam Tub family 97 395 IPR000007 -
Lac12g2379 400 SUPERFAMILY Tubby C-terminal domain-like 84 400 IPR025659 -
Lac12g2379 400 PANTHER TUBBY-RELATED 30 399 - -
Lac12g2379 400 SUPERFAMILY F-box domain 26 78 IPR036047 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2379 K19600 - - csv:101203437 726.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2379 Lac-Chr12:40902928 Lac5g2113 Lac-Chr5:39768262 8.20E-123 dispersed
Lac2g1686 Lac-Chr2:15347784 Lac12g2379 Lac-Chr12:40902928 4.10E-120 transposed
Lac5g2398 Lac-Chr5:42678189 Lac12g2379 Lac-Chr12:40902928 1.40E-103 transposed
Lac12g2379 Lac-Chr12:40902928 Lac7g0837 Lac-Chr7:6759323 6.40E-184 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g364 . . . Bda08g00279 . . . . Cmo08g01177 Cmo17g00296 Cma06g01463 Cma14g01645 Car06g01262 Car14g01476 Sed02g1224 . Cpe03g01389 Bhi01g00948 Tan10g0947 Cmetu07g1074 Lac12g2379 Hepe05g1485 . Lcy11g1455 Cla06g00505 Cam06g0544 Cec06g0545 Cco06g0552 Clacu06g0531 Cmu06g0529 Cre06g1299 Cone14ag0786 . Cone7ag0180 Cone4ag0175 Lsi05g01499 . Chy11g01469 Cme06g00687 . . . . . . . . . . Cmo14g01689 Cma08g01203 Cma17g00306 Car08g01080 . Cpe12g00258 Cpe17g00002 Bhi12g01742 . . . . . . Cla05g00612 Cam05g0673 Cec05g0683 Cco05g0677 Clacu05g0667 Cmu05g0635 Cre05g0707 Lsi09g01396 Csa03g01411 Chy06g00654 Cme11g01977
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac2g1686 . 1 430 TUB Transcription Factor Family AT1G76900 73.0 7.8e-178 620.9
Lac5g2537 . 1 428 TUB Transcription Factor Family AT1G76900 71.0 3.2e-171 599.0
Lac8g1678 . 1 432 TUB Transcription Factor Family AT1G76900 69.7 9.3e-171 597.4
Lac5g2113 . 1 401 TUB Transcription Factor Family AT1G76900 50.9 4.7e-114 409.1
Lac5g2537 . 174 428 TUB Transcription Factor Family AT1G25280 73.5 4.5e-101 365.2
Lac8g1678 . 175 432 TUB Transcription Factor Family AT1G25280 71.2 1.8e-94 343.2
Lac2g1686 . 173 430 TUB Transcription Factor Family AT1G25280 68.3 3.2e-94 342.4
Lac5g2113 . 165 401 TUB Transcription Factor Family AT1G25280 55.8 2.4e-70 263.1
Lac7g0837 . 154 397 TUB Transcription Factor Family AT1G25280 50.5 1.1e-67 254.2
Lac12g2379 . 154 400 TUB Transcription Factor Family AT1G25280 51.6 3.6e-66 249.2
Lac1g2922 . 176 412 TUB Transcription Factor Family AT1G25280 50.9 2.2e-63 240.0
Lac12g2379 . 98 400 TUB Transcription Factor Family AT5G18680 60.6 5.2e-98 355.1
Lac7g0837 . 98 397 TUB Transcription Factor Family AT5G18680 60.1 7.8e-94 341.3
Lac2g1686 . 112 430 TUB Transcription Factor Family AT5G18680 53.0 2.5e-84 309.7
Lac8g1678 . 112 432 TUB Transcription Factor Family AT5G18680 52.1 1.6e-83 307.0
Lac5g2537 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 3.1e-82 302.8
Lac5g2113 . 103 401 TUB Transcription Factor Family AT5G18680 53.0 7.1e-79 291.6
Lac5g2398 . 120 388 TUB Transcription Factor Family AT5G18680 50.2 1.1e-68 257.7
Lac5g2113 . 1 401 TUB Transcription Factor Family AT2G18280 61.9 3.3e-140 495.7
Lac1g2922 . 1 412 TUB Transcription Factor Family AT2G18280 61.9 3.1e-138 489.2
Lac5g2537 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 6.0e-118 421.8
Lac2g1686 . 1 430 TUB Transcription Factor Family AT2G18280 52.5 7.4e-116 414.8
Lac8g1678 . 1 432 TUB Transcription Factor Family AT2G18280 51.8 1.2e-113 407.5
Lac7g0837 . 1 397 TUB Transcription Factor Family AT2G18280 52.0 2.0e-113 406.8
Lac12g2379 . 1 400 TUB Transcription Factor Family AT2G18280 52.0 1.0e-112 404.4
Lac5g2398 . 56 388 TUB Transcription Factor Family AT2G18280 51.4 1.1e-95 347.8
Lac12g2379 . 1 400 TUB Transcription Factor Family AT2G47900 66.9 5.6e-159 558.1
Lac7g0837 . 1 397 TUB Transcription Factor Family AT2G47900 67.1 1.4e-157 553.5
Lac2g1686 . 1 430 TUB Transcription Factor Family AT2G47900 56.1 6.2e-134 474.9
Lac5g2537 . 1 428 TUB Transcription Factor Family AT2G47900 56.6 9.9e-132 467.6
Lac8g1678 . 1 432 TUB Transcription Factor Family AT2G47900 56.6 8.4e-131 464.5
Lac5g2113 . 1 401 TUB Transcription Factor Family AT2G47900 56.6 4.2e-122 435.6
Lac1g2922 . 1 412 TUB Transcription Factor Family AT2G47900 53.1 6.9e-117 418.3
Lac5g2398 . 56 388 TUB Transcription Factor Family AT2G47900 52.6 7.4e-103 371.7
Lac4g2724 . 82 307 TUB Transcription Factor Family AT1G16070 60.9 2.3e-74 276.6
Lac2g1686 . 67 430 TUB Transcription Factor Family AT1G43640 71.3 1.0e-148 523.9
Lac5g2537 . 66 428 TUB Transcription Factor Family AT1G43640 68.5 7.4e-147 517.7
Lac8g1678 . 65 432 TUB Transcription Factor Family AT1G43640 66.0 9.4e-142 500.7
Lac12g2379 . 47 400 TUB Transcription Factor Family AT1G43640 50.9 2.9e-106 382.9
Lac7g0837 . 49 397 TUB Transcription Factor Family AT1G43640 51.9 3.0e-103 372.9
Lac1g2922 . 33 412 TUB Transcription Factor Family AT1G47270 57.9 3.6e-123 439.1
Lac5g2113 . 22 401 TUB Transcription Factor Family AT1G47270 57.8 2.3e-122 436.4
Lac5g2537 . 1 428 TUB Transcription Factor Family AT1G47270 52.6 7.3e-116 414.8
Lac2g1686 . 1 430 TUB Transcription Factor Family AT1G47270 50.6 4.4e-113 405.6
Lac8g1678 . 48 432 TUB Transcription Factor Family AT1G47270 54.5 1.4e-111 400.6
Lac5g2398 . 1 388 TUB Transcription Factor Family AT1G53320 70.9 2.4e-156 549.3
Lac5g2113 . 8 401 TUB Transcription Factor Family AT1G53320 51.0 1.8e-103 373.6
Lac7g0837 . 98 397 TUB Transcription Factor Family AT3G06380 61.7 1.2e-94 344.0
Lac12g2379 . 98 400 TUB Transcription Factor Family AT3G06380 60.6 1.3e-93 340.5
Lac5g2537 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 3.0e-82 302.8
Lac8g1678 . 116 432 TUB Transcription Factor Family AT3G06380 53.0 5.6e-81 298.5
Lac2g1686 . 116 430 TUB Transcription Factor Family AT3G06380 52.1 9.6e-81 297.7
Lac5g2113 . 107 401 TUB Transcription Factor Family AT3G06380 53.5 1.1e-79 294.3
Lac1g2922 . 118 412 TUB Transcription Factor Family AT3G06380 50.7 2.3e-74 276.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002294 1 2 1 1 2 2 3 2 2 2 2 2 4 1 2 4 2 3 3 2 2 2 2 2 2 2 2 3 2 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23108 PF01167 Tub 8.50E-107 CL0395 Lac TF