Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2379 ATGTCGCTGAAGAGCATCTTTCAAGATATGAGGTCCCGGTCCCGCCGCGTGGTGCAGGACGGCTCGGCGCCGGAGCCGAGGGACGGCCTCGACCAGAGCTGTTGGGCCAATATGCCTCAGGAGCTTCTCAGGGAGGTTCTGATGAGAATCGAGGCGTCCGAGACCTCCTGGCCGCCGAGGAAGAGTGTCGTCGCTTGCGCCGGAGTGTGCCGGAGCTGGCGAGCCATTACTAAGGAGATCGTCAAAACGCCGGAGGTTTCCGGCAGGTTGACGTTCCCGATCTCTATCAAGCAGCCTGGTCCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTCTTCCTCAGTCTTACTAATGCACTGAGTGACGATGGTAAATTTCTACTTGCTGCTCGTAAATGCAAGCGCCCGACCTACACAGATTATATTATCTCTTTACATGCTGAGGATTTGTCGAAGGGGAGCAGCACCTATGTTGGGAAATTGAGATCTAATTTCCTAGGAACCAAGTTCACAATCTTTGATGGGCAACCACCACATTCCGGAGCCAAGATCACAAAAAGTCGCTCCACAAGGCTAGTGAATCTGAAACAAGTTTCGCCCAAGGTTCCTGCAGGGAACTATCCAGTTGCCCACATTTCATATGAACTAAATGTGTTGGGATCAAGATGTCTAGCAAATGCTAAAAAGTTGATGTCATTAACAAGCAGGGGTCCAAGGAGAATGCAGTGTATCATGGACGCCATTCCCGCTTCCGCAGTTGAACCTGGAGGAGTGGCTCCCACACAGACCGAGCTTTCTTTAAGCAACGTGGAATTGTTTCCATCGTTCCCATTCCTAAGGTCAAAATCAAATGCGGATAGCTTGCTTTCTGAACCTTTGGGCAGTCAGAAAGATGGAATGCTGGTGCTGAGAAACAAGACTCCCCGGTGGCACGAGCAGCTTCAGTGCTGGTGTTTGAACTTTCATGGAAGAGTTACTATTGCTTCCGTGAAAAATTTTCAACTAGTCGCTTCTTCGGAAAATGAACCACCTACACAAGAACATGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCGTTACCCGATCTCCGCTTTCCAGGCTTTTGCAATCTGCCTCAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1203 48.71 MSLKSIFQDMRSRSRRVVQDGSAPEPRDGLDQSCWANMPQELLREVLMRIEASETSWPPRKSVVACAGVCRSWRAITKEIVKTPEVSGRLTFPISIKQPGPRDPLLQCFIKRNRSNQTYYLFLSLTNALSDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRCLANAKKLMSLTSRGPRRMQCIMDAIPASAVEPGGVAPTQTELSLSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASSENEPPTQEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40902928 40905205 + Lag0016751.1 Lac12g2379 590976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2379 400 CDD F-box_AtTLP-like 35 79 - -
Lac12g2379 400 ProSitePatterns Tub family signature 2. 385 400 IPR018066 -
Lac12g2379 400 Gene3D Tubby Protein; Chain A 93 400 IPR025659 -
Lac12g2379 400 MobiDBLite consensus disorder prediction 1 32 - -
Lac12g2379 400 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Lac12g2379 400 PRINTS Tubby superfamily signature 330 346 IPR000007 -
Lac12g2379 400 PRINTS Tubby superfamily signature 312 329 IPR000007 -
Lac12g2379 400 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Lac12g2379 400 PRINTS Tubby superfamily signature 357 376 IPR000007 -
Lac12g2379 400 PRINTS Tubby superfamily signature 378 400 IPR000007 -
Lac12g2379 400 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Lac12g2379 400 Pfam F-box domain 35 78 IPR001810 GO:0005515(InterPro)
Lac12g2379 400 FunFam Tubby-like F-box protein 92 400 - -
Lac12g2379 400 ProSitePatterns Tub family signature 1. 330 343 IPR018066 -
Lac12g2379 400 Pfam Tub family 97 395 IPR000007 -
Lac12g2379 400 SUPERFAMILY Tubby C-terminal domain-like 84 400 IPR025659 -
Lac12g2379 400 PANTHER TUBBY-RELATED 30 399 - -
Lac12g2379 400 SUPERFAMILY F-box domain 26 78 IPR036047 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2379 Lac-Chr12:40902928 Lac5g2113 Lac-Chr5:39768262 8.20E-123 dispersed
Lac2g1686 Lac-Chr2:15347784 Lac12g2379 Lac-Chr12:40902928 4.10E-120 transposed
Lac5g2398 Lac-Chr5:42678189 Lac12g2379 Lac-Chr12:40902928 1.40E-103 transposed
Lac12g2379 Lac-Chr12:40902928 Lac7g0837 Lac-Chr7:6759323 6.40E-184 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23108 PF01167 Tub 8.50E-107 CL0395 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2379 K19600 - csv:101203437 726.857