Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2383 ATGGCGAAACCCTCGAAGCGACAGGCGTCTTCCGATGAAGCCATGTCCAATGGCTCGAGCTCGTCGGAGGAAGAGGAGCAAGCCAACGAGCAGATCAATGAGGAGGAAGACGAGGAGGAGCTTGAAGCGGTTGCTCGCTCGGCAGGCTCCGACGAGGATGAAGCTGCCGATGATTCAGATAACGATACCTCACCTGTCGAGAATGGCGAGGAAGAGGATGGGAGTAACGACGGCAGTGATGACAAAGCCGATATTAGCAGGCGTGAAAAGGCCAGACTAAGAGATATGCAAAAATTGAAGAAGCAGAAGATTCAGGATATGTTAGATGCGCAGAATGCTGCAATTGACGCTGATATGAATAATAAGGGGAAGGGACGCTTGAAATATCTTTTGCAACAAACAGAGATATTTGCTCATTTTGCAAAAGGCGAGCATTCTTCTTCCCAAAAGAAAACGAAGGGAAGGGGTCGACATGCTTCAAAACTAACTGAAGAAGAAGAAGATGAAGAATACCTTAAAGAGGAAGAAGATGGTCTATCTGGGACAGGGAACACTCGTCTAGTTTCACAACCATCTTGTATCCAAGGGAAAATGAGGGATTATCAACTAGCTGGATTAAATTGGCTCATTCGACTATACGAGAATGGCATAAATGGAATCCTTGCTGATGAGATGGGGCTTGGCAAAACTCTACAAACCATCTCCTTATTGGGCTATCTCCACGAGTACAGAGGGATAACAGGGCCCCATATGGTAGTTGCACCAAAATCTACTCTGGGAAACTGGATGAATGAAATTCGTCGTTTTTGCCCCGTCCTACGTGCAGTAAAGTTTCTTGGAAATCCTGATGAAAGGAGGGATATACGGGATAATTTACTGGTTGCTGGGAAGTTTGATGTTTGTGTTACCAGTTTTGAAATGGCCATCAAGGAGAAGTCTTGCTTGCGTCGTTTTAGTTGGCGCTACATTATTATTGATGAAGCTCATCGAATTAAGAATGAGAATTCCCTCCTTTCAAAGACAATGAGGCTTTATAATACCAACTATCGTCTTCTAATCACTGGCACACCGCTTCAGAACAATCTTCATGAACTATGGTCTCTCCTCAATTTCCTTTTGCCTGAAATATTTAGTTCAGCAGAGACTTTTGATGAATGGTTTCAAATTTCTGGGGAAAATGATCAGCAGGAGGTTGTTCAACAACTTCACAAGGTTCTTCGGCCGTTTCTTCTTCGGAGGTTGAAATCGGATGTCGAGAAAGGCTTACCTCCAAAAAAAGAAACAATACTCAAAGTAGGCATGTCACAGATGCAGAAACAATACTATCGTGCTTTGCTGCAGAAGGATCTTGAAGTTGTTAATGCTGGTGGTGAGCGTAAACGGCTTCTTAATATAGCAATGCAGCTCCGAAAGTGCTGTAATCACCCATATTTGTTTCAAGGTGCTGAACCTGGGCCTCCTTACACCACAGGAGACCATCTTATTACAAGTGCTGGTAAAATGGTTCTTTTGGACAAGTTGCTTCCAAAGCTAAAAGAGCGTGATTCTAGAGTCCTAATATTTTCACAGATGACAAGGCTGTTGGACATTCTTGAAGATTATTTAATGTTTCGTGGATACTATTACTGCCGGATTGATGGTAACACTGGTGGTGAAGATCGTGATGCATCCATTGATGCCTTCAACAGACCAGGAAGTGAAAAGTTTGTTTTCTTGCTATCAACCAGAGCTGGAGGTCTTGGTATTAATCTTGCTACGGCAGATGTAGTTATTCTTTATGACAGTGACTGGAACCCTCAAGTTGATCTGCAAGCACAAGATCGTGCTCACAGGATTGGTCAGAAGAAGGAAGTTCAGGTGTTCCGGTTTTGCACTGAGTATACCATTGAGGAAAAAGTGATTGAAAGGGCTTACAAGAAACTTGCCCTCGATGCTTTGGTGATTCAACAAGGACGTTTAGCAGAGCAGAAAACTGTCAACAAGGATGAGCTACTTCAAATGGTGAGGTTTGGTGCTGAGATGGTTTTCAGTTCCAAAGATAGCACCATCACAGATGAGGACATTGACAGAATCATTGCAAAAGGAGAAGCAGCAACAGCAGAGCTTGATGCAAAGATGAAGAAATTTACAGAAGATGCCATTAAATTTAAAATGGATGAAACTGCTGAATTGTATGATTTTGATGATGAAAAGGATGAGAATAAATTTGACTTCAAGAAAATTGTTAGTGAAAATTGGATTGAACCACCTAAAAGGGAGCGGAAGCGCAATTACTCGGAATCAGAATACTTTAAGCAAACGATGCGGCAGGGTGGTCCAACAAAACCAAAAGAGCCTAGGATTCCTCGCATGCCTCAGTTGCACGATTTCCAGTTTTTTAACACACAAAGGTTGAGTGAACTCTATGAAAAAGAAGTACGGTATCTCATGCAAACACATCAAAAGAATCAGCTGAAGGACACAATAGATGTTGAAGAGACTGAAGATGTGGGTGATCCCTTGACTGCCGAAGAGTTGGAAGAGAAGGAGCGACTCTTAGAGGAAGGATTTTCTTCATGGAGTCGTAGAGATTTCAATACATTTATTAGGGCTTGTGAGAAGTATGGGCGAAATGATATTAAAAGTATTGCTTCAGAGATGGAAGGAAAAACAGAAGAAGAAGTTGAGAGATATGCAAAGGTCTTTAAAGAGAGATACAAGGAGTTGAATGATTATGATAGAATCATCAAGAACATAGAAAGAGGGGAAGCGAGGATTTCTCGTAAAGATGAAATAATGAAGGCCATTGGTAAGAAACTGGATCGCTACAAAAATCCATGGCTGGAGCTCAAGATCCAGTATGGCCAGAATAAAGGGAAGTTGTATAATGAAGAATGTGATCGTTTCATGATATGCATGGTTCACAAGCTTGGTTATGGAAACTGGGACGAACTGAAGGCAGCATTTCGCACATCACCCTTGTTCCGGTTTGATTGGTTTATCAAGTCGAGAACAACACAAGAACTTGCGAGGAGGTGCGATACCTTAATTCGATTAGTGGAGAAAGAAAACCAGGAACATGATGAAAGGGAGAGACAGGCCCGTAAAGAAAAGAAGCTTGCGAAGAGTATGACGCCATCAAAACGTGCCTTGGCTAGGCAGACTGAGAGCCCGACTAACCTAAAGAAGCGGAAGCAATTATCGATGGATGATTATGTAAACTCCGGAAAGCGGAGGAAGTAA 3222 42.46 MAKPSKRQASSDEAMSNGSSSSEEEEQANEQINEEEDEEELEAVARSAGSDEDEAADDSDNDTSPVENGEEEDGSNDGSDDKADISRREKARLRDMQKLKKQKIQDMLDAQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGEHSSSQKKTKGRGRHASKLTEEEEDEEYLKEEEDGLSGTGNTRLVSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRDIRDNLLVAGKFDVCVTSFEMAIKEKSCLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYYYCRIDGNTGGEDRDASIDAFNRPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEAATAELDAKMKKFTEDAIKFKMDETAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEETEDVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFIKSRTTQELARRCDTLIRLVEKENQEHDERERQARKEKKLAKSMTPSKRALARQTESPTNLKKRKQLSMDDYVNSGKRRK 1073
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 40940869 40948188 + Lag0016755.1 Lac12g2383 590980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2383 1073 FunFam ISWI chromatin-remodeling complex ATPase CHR11 750 848 - -
Lac12g2383 1073 Gene3D - 199 414 IPR038718 -
Lac12g2383 1073 Gene3D iswi atpase 904 936 - -
Lac12g2383 1073 CDD DEXHc_SMARCA1_SMARCA5 195 415 IPR044754 GO:0005524(InterPro)
Lac12g2383 1073 MobiDBLite consensus disorder prediction 53 78 - -
Lac12g2383 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 695 IPR027417 -
Lac12g2383 1073 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 761 851 IPR036306 GO:0003677(InterPro)|GO:0006338(InterPro)|GO:0031491(InterPro)
Lac12g2383 1073 CDD SF2_C_SNF 499 624 IPR049730 -
Lac12g2383 1073 MobiDBLite consensus disorder prediction 79 96 - -
Lac12g2383 1073 SMART ultradead3 194 386 IPR014001 -
Lac12g2383 1073 MobiDBLite consensus disorder prediction 27 42 - -
Lac12g2383 1073 Coils Coil 18 42 - -
Lac12g2383 1073 MobiDBLite consensus disorder prediction 141 184 - -
Lac12g2383 1073 FunFam ISWI chromatin-remodeling complex ATPase CHR11 419 711 - -
Lac12g2383 1073 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 654 IPR001650 -
Lac12g2383 1073 MobiDBLite consensus disorder prediction 1018 1073 - -
Lac12g2383 1073 Gene3D - 937 1040 - -
Lac12g2383 1073 ProSiteProfiles SANT domain profile. 848 900 IPR017884 -
Lac12g2383 1073 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 4 1043 - GO:0000785(PANTHER)|GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0006357(PANTHER)|GO:0016887(PANTHER)|GO:0034728(PANTHER)|GO:0042393(PANTHER)|GO:0140658(PANTHER)
Lac12g2383 1073 Pfam HAND 762 847 IPR015194 GO:0003677(InterPro)|GO:0006338(InterPro)|GO:0031491(InterPro)
Lac12g2383 1073 FunFam ISWI chromatin-remodeling complex ATPase CHR11 937 1040 - -
Lac12g2383 1073 Pfam Helicase conserved C-terminal domain 500 613 IPR001650 -
Lac12g2383 1073 SMART sant 849 898 IPR001005 -
Lac12g2383 1073 SMART sant 951 1012 IPR001005 -
Lac12g2383 1073 SUPERFAMILY Homeodomain-like 904 1026 IPR009057 -
Lac12g2383 1073 Gene3D - 419 711 IPR027417 -
Lac12g2383 1073 Pfam SLIDE 906 1016 IPR015195 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006338(InterPro)
Lac12g2383 1073 Coils Coil 1010 1033 - -
Lac12g2383 1073 Gene3D - 849 903 - -
Lac12g2383 1073 Pfam SNF2-related domain 201 478 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Lac12g2383 1073 MobiDBLite consensus disorder prediction 1 96 - -
Lac12g2383 1073 MobiDBLite consensus disorder prediction 1018 1037 - -
Lac12g2383 1073 SUPERFAMILY Homeodomain-like 852 902 IPR009057 -
Lac12g2383 1073 MobiDBLite consensus disorder prediction 1051 1073 - -
Lac12g2383 1073 Gene3D ISWI, HAND domain 750 848 IPR036306 GO:0003677(InterPro)|GO:0006338(InterPro)|GO:0031491(InterPro)
Lac12g2383 1073 MobiDBLite consensus disorder prediction 9 26 - -
Lac12g2383 1073 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 849 903 - -
Lac12g2383 1073 SMART helicmild6 529 613 IPR001650 -
Lac12g2383 1073 FunFam Chromatin-remodeling complex ATPase 199 414 - -
Lac12g2383 1073 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 375 IPR014001 -
Lac12g2383 1073 CDD SANT 852 896 IPR001005 -
Lac12g2383 1073 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 413 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2383 K11654 - - csv:101221495 1999.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1088 Lac-Chr12:13570427 Lac12g2383 Lac-Chr12:40940869 3.60E-103 dispersed
Lac12g2383 Lac-Chr12:40940869 Lac5g2064 Lac-Chr5:39128634 4.60E-128 dispersed
Lac12g2383 Lac-Chr12:40940869 Lac9g2794 Lac-Chr9:46049761 2.00E-131 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g350 . . . Bda08g00281 . . . Bma05g01060 Cmo08g01181 . . . . . . . . . . . . . . . Cla06g00499 Cam06g0536 Cec06g0536 Cco06g0540 Clacu06g0521 Cmu06g0523 Cre06g1293 . . . . . . Chy11g01479 . . . . . Bpe05g00850 . . . Sed09g0640 . . Cma08g01207 . Car08g01083 . . Cpe17g00005 Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . Lsi09g01406 . . Cme11g01986
Vvi5g460 . . . . . Bpe14g01173 . . Cmo08g01132 Cmo17g00241 . . . . . . . . . . . . . . Cla06g00562 Cam06g0602 Cec06g0602 Cco06g0607 Clacu06g0588 Cmu06g0583 Cre06g1349 . . . . . . . . Blo02g00553 . . Bda13g00140 . . Bma02g00859 . Sed09g0640 . . Cma08g01160 Cma17g00255 Car08g01037 Car17g00229 Cpe12g00211 Cpe17g00136 Bhi12g01822 Tan06g2636 Cmetu11g0294 Lac12g2383 Hepe03g0122 . Lcy13g0197 . . . . . . . Lsi09g01338 . . .
Vvi7g199 Blo05g00334 Blo06g00476 Bda04g00584 Bda10g00606 . Bpe06g00492 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0684 Cone11ag0873 . . . . . . . . Bpe10g00440 . Bma09g00709 Bma15g00556 Sed09g0640 . . . . . . . . Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . . . . .
Vvi15g844 . . . . Bpe14g00988 . . . . . Cma06g01073 Cma14g02045 . Car14g01852 . . Cpe03g01736 Bhi01g00345 . . . . . . Cla05g00160 Cam05g0175 Cec05g0173 Cco05g0184 Clacu05g0172 Cmu05g0164 Cre05g0228 Cone14ag0368 Cone15ag0405 . . Lsi05g02048 . . Cme06g00171 Blo02g00363 . . Bda13g00342 . . Bma02g01053 . Sed09g0640 . Cmo14g02109 . . . . . . Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . . Csa03g00884 Chy06g00163 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009268 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23109 PF00176 SNF2_N 2.00E-71 CL0023 Lac TR