Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2421 ATGGAAAGCCCCACTGTGTTCTCTATCTTCATCTTCCTGTGTATTGGGCTTCGAGCTTTCTCAGCCATGGCGGATGACGAGGCAGTTACAGTGAAGGTCGGGGTCGTTCTTGACTCCGATTCTTCGATTGGGAAAATGGGGTTGAGTTTTATGGAAATGGCTCTCTCTGATTTCTATGGATTTCATGGAAATTACAAGACCCGTTTGGCTCTGTTCCCGAAAAACTCCATGGGAGACGTTGTTGAAGCTACTGCTGCAGCTTTAGAGTTAATCAAGAACGAAGAAGTGGAAGCCATTGTTGGGCCACAGAGTTCAACTCAAGCAACTTTCATGGCGGATCTCGGGAAAAAATCTCATGTACCCGTCATTTCATTTTCTGCAACGAGCCCATCTCTGGATTCTCATCGGAACCCTTACTTTTTCCGAGCGACCCAAATCGATTCATCGCAAGCGAAACCCATCGCCGCCATTTTTAAAGCCTTCGATTGGAGACAGGTGGTGCTCATTCATACAGATGATGAATTTGGCGAGGGGATTTTGCCCTCCATGAGAGATGCTCTGCTAGAGGTTAACACTCGAGTGGCTTACGAGACTGCGATTCCTCAATCTGCTTCTGATGACAGAATCGCCAAAGAGCTTTACAAATTGATGACGATGCAAACGAGAGTTTTCGTTGTTCATATGTTACCAGAGCTTGGTTCTCGCGTTTTCGCCATGGCTAAGGAGATTGGAATGATGGGGTCGGGTTATGTTTGGATTATAACTGATGGGATGAGTAATTTTCTCTCTCGAATCGATGATTCCGCCATGGAAGCCATGAGTGGAGCTTTGGGTGTAAGAACTTACATTCCCAGAACAGACAAACTAGAAGATTTTCAGATGCGGTGGAGAAGGAAATTTGAAAAGGAAGTTTCTGAACTGAATATATTTGGGTTGCGAGCTTATGATGCAACTGTTGCTCTAGCCAAGGCTGTGGAGAGAGTTGGAACCACAGAGTTCATCTTCAAGAAGCCAAACGTTTCTGGCAAATCTACAGATCTTGACAATCTTGGGGTCTCTCGAAATGGTCCAAGGCTGTCTGAGGCATTGTCTAAAACACATTTCAAAGGGCTTGCAGGAGACTTCAGAATGGTTGAAGGGCAATTGAAATCATCAACTTATGAGATTATAAATATCAATCATGAAAGGAATATTACAGTGGTTGGATTCTGGACACCAGAAAATGGACTGACACAAACCTTAGACTCCATGAAAATGAGCTCAAACACTTCTGTTGCAAATCTTAGCCACATCATGTGGCCAGGAGATGATTCCAATTATTTCAATCTCCCAAAAGGTTGGGTCACTCCAACAAATGAAAAGAAGCTGAAATTTGGAATTCCAGTTAAATCTGGGGTCAGTAAGTTTATTAGAGAAATAAGGGACCCAGTGACTAACAGGACAAAGAAAACAGGGTACAGCATCGATATCTTTGAAGCTGTAATCAAAGCACTACCGTATGCTGTTTCATATGAATACATTCGGTTTGAAAATGAAGGAGTAATGGCTGGTAGCTACGAGGACATGGTCAAGCAAGTATACTTGGGGGTATACGATGCGGTCGTAGGAGATGTATCCATTAGAGAAAGCAGATCCCAATATGTAGACTTCACATTGCCATACTCTGAAGCTAGCGTGTCAATGGTTGTACTATTTCGAGATAACAAGAACAAAGCTTGGCTTTTCTTGAAGCCTTTGTCATTGAACCTTTGGTTGACAAGTGCTTTCTTTTTTGCCTTCATTGGACTGGTCATCTGGATTCTTGAGCACAGAATCAATGAAGATTTTAGAGGTCCTCCCTCGCACGAAATCGGGACAAGCTTCTGGTTTGCTTTCTCAACTATGGTGTATGCTCAAAGGGAGAAGGTGGAAAGCAACTTGGCTAGATTTGTGGTAATAGTATGGCTATTTGTGGTGCTCATATTGACTCAGAGTTACACGGCCAGTCTTACGTCGCTACTGACAGTTCAAAAACTGGAGCCAACTTTTACTGATATGAACCAGCTGAAGGAGCAGAAGGTGAATGTTGGATACCCAAATGGTTCTTTTGTTCAAGAATTGCTGATAGCTCAAGGTTTTGATAGATCCAAGCTTGTAATCTATAACAATATGGCACATTGTGGATCATTGTTCTTAAATGGGACCATAGCTGCTGCCTTTGATGAAATCCCTTACCTCAAGGTTCTTACCACAACATATTGCACCAATTGCACCATCGTCGGTCCCACAATGAAATCGAACGGCTTTGGCTATGTCTTCCCCAAGGGGTCTCAACTCGGACGCGATGTTTCCAAGGGAATACTTGATGTAATGGAGAGTGGAGTTCTGCAAGAGATTGAAAACAAATGGTTTAAAGGCAACATCAGCAGCCCTGATCCCAATAGCTTGATTTCCACCACACTTGGGCTTGAAAGCTTTTGGGGGTTGTTTCTTGTTACAGGAGCTGTATCTTCATCTGCACTCATTGTAGCTCTGGCCAGTTTTCTCTATGAACACAGACATGTCTTGAAGCTTTCCACTCTCTCAATGTGGAAAAGGTTTCTTCTTCTCTTGAAAATTTTCGACGAGAAAGACCTGACTTCACCGGCGTTGCGAAAGAATCGTCAAGACGAAAGCCCGGAAGTTAAAGATATCAGATTTGAACCTCATCCCAGCCCTTCCTGTGATTCAAGCTACAGAAATGGAGGACTTTCGCCTTGTAACTTTGATGATTTCAATGGTGGTCAGATTGCAACTCCTCAACCATCACCAAGCAGGTAA 2799 43.37 MESPTVFSIFIFLCIGLRAFSAMADDEAVTVKVGVVLDSDSSIGKMGLSFMEMALSDFYGFHGNYKTRLALFPKNSMGDVVEATAAALELIKNEEVEAIVGPQSSTQATFMADLGKKSHVPVISFSATSPSLDSHRNPYFFRATQIDSSQAKPIAAIFKAFDWRQVVLIHTDDEFGEGILPSMRDALLEVNTRVAYETAIPQSASDDRIAKELYKLMTMQTRVFVVHMLPELGSRVFAMAKEIGMMGSGYVWIITDGMSNFLSRIDDSAMEAMSGALGVRTYIPRTDKLEDFQMRWRRKFEKEVSELNIFGLRAYDATVALAKAVERVGTTEFIFKKPNVSGKSTDLDNLGVSRNGPRLSEALSKTHFKGLAGDFRMVEGQLKSSTYEIININHERNITVVGFWTPENGLTQTLDSMKMSSNTSVANLSHIMWPGDDSNYFNLPKGWVTPTNEKKLKFGIPVKSGVSKFIREIRDPVTNRTKKTGYSIDIFEAVIKALPYAVSYEYIRFENEGVMAGSYEDMVKQVYLGVYDAVVGDVSIRESRSQYVDFTLPYSEASVSMVVLFRDNKNKAWLFLKPLSLNLWLTSAFFFAFIGLVIWILEHRINEDFRGPPSHEIGTSFWFAFSTMVYAQREKVESNLARFVVIVWLFVVLILTQSYTASLTSLLTVQKLEPTFTDMNQLKEQKVNVGYPNGSFVQELLIAQGFDRSKLVIYNNMAHCGSLFLNGTIAAAFDEIPYLKVLTTTYCTNCTIVGPTMKSNGFGYVFPKGSQLGRDVSKGILDVMESGVLQEIENKWFKGNISSPDPNSLISTTLGLESFWGLFLVTGAVSSSALIVALASFLYEHRHVLKLSTLSMWKRFLLLLKIFDEKDLTSPALRKNRQDESPEVKDIRFEPHPSPSCDSSYRNGGLSPCNFDDFNGGQIATPQPSPSR 932
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 41280177 41284118 + Lag0016793.1 Lac12g2421 591018
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2421 932 PRINTS Metabotropic glutamate GPCR signature 166 183 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lac12g2421 932 PRINTS Metabotropic glutamate GPCR signature 99 125 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lac12g2421 932 PRINTS Metabotropic glutamate GPCR signature 131 150 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lac12g2421 932 PRINTS Metabotropic glutamate GPCR signature 150 166 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Lac12g2421 932 FunFam Glutamate receptor 572 702 - -
Lac12g2421 932 SUPERFAMILY Voltage-gated potassium channels 579 667 - -
Lac12g2421 932 SUPERFAMILY Periplasmic binding protein-like II 444 800 - -
Lac12g2421 932 Gene3D - 572 700 - -
Lac12g2421 932 Gene3D - 726 804 - -
Lac12g2421 932 MobiDBLite consensus disorder prediction 878 932 - -
Lac12g2421 932 Pfam Ligand-gated ion channel 799 828 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac12g2421 932 PIRSF IGluLR_plant 2 906 IPR017103 -
Lac12g2421 932 FunFam Glutamate receptor 455 573 - -
Lac12g2421 932 CDD GluR_Plant 454 797 - -
Lac12g2421 932 Gene3D - 343 455 - -
Lac12g2421 932 FunFam Glutamate receptor 150 309 - -
Lac12g2421 932 MobiDBLite consensus disorder prediction 918 932 - -
Lac12g2421 932 Pfam Receptor family ligand binding region 51 394 IPR001828 -
Lac12g2421 932 CDD PBP1_GABAb_receptor_plant 32 414 IPR044440 -
Lac12g2421 932 Pfam Bacterial extracellular solute-binding proteins, family 3 481 580 IPR001638 -
Lac12g2421 932 Gene3D - 148 315 - -
Lac12g2421 932 Gene3D - 456 571 - -
Lac12g2421 932 SUPERFAMILY Periplasmic binding protein-like I 30 435 IPR028082 -
Lac12g2421 932 SMART GluR_14 455 799 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lac12g2421 932 PANTHER OS06G0188250 PROTEIN 11 483 IPR015683 -
Lac12g2421 932 MobiDBLite consensus disorder prediction 878 896 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2421 Lac-Chr12:41280177 Lac6g0568 Lac-Chr6:4734738 1.20E-236 dispersed
Lac12g2421 Lac-Chr12:41280177 Lac12g0601 Lac-Chr12:6408862 1.50E-122 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2421 K05387 - csv:101213301 1575.45