Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac12g2421 | ATGGAAAGCCCCACTGTGTTCTCTATCTTCATCTTCCTGTGTATTGGGCTTCGAGCTTTCTCAGCCATGGCGGATGACGAGGCAGTTACAGTGAAGGTCGGGGTCGTTCTTGACTCCGATTCTTCGATTGGGAAAATGGGGTTGAGTTTTATGGAAATGGCTCTCTCTGATTTCTATGGATTTCATGGAAATTACAAGACCCGTTTGGCTCTGTTCCCGAAAAACTCCATGGGAGACGTTGTTGAAGCTACTGCTGCAGCTTTAGAGTTAATCAAGAACGAAGAAGTGGAAGCCATTGTTGGGCCACAGAGTTCAACTCAAGCAACTTTCATGGCGGATCTCGGGAAAAAATCTCATGTACCCGTCATTTCATTTTCTGCAACGAGCCCATCTCTGGATTCTCATCGGAACCCTTACTTTTTCCGAGCGACCCAAATCGATTCATCGCAAGCGAAACCCATCGCCGCCATTTTTAAAGCCTTCGATTGGAGACAGGTGGTGCTCATTCATACAGATGATGAATTTGGCGAGGGGATTTTGCCCTCCATGAGAGATGCTCTGCTAGAGGTTAACACTCGAGTGGCTTACGAGACTGCGATTCCTCAATCTGCTTCTGATGACAGAATCGCCAAAGAGCTTTACAAATTGATGACGATGCAAACGAGAGTTTTCGTTGTTCATATGTTACCAGAGCTTGGTTCTCGCGTTTTCGCCATGGCTAAGGAGATTGGAATGATGGGGTCGGGTTATGTTTGGATTATAACTGATGGGATGAGTAATTTTCTCTCTCGAATCGATGATTCCGCCATGGAAGCCATGAGTGGAGCTTTGGGTGTAAGAACTTACATTCCCAGAACAGACAAACTAGAAGATTTTCAGATGCGGTGGAGAAGGAAATTTGAAAAGGAAGTTTCTGAACTGAATATATTTGGGTTGCGAGCTTATGATGCAACTGTTGCTCTAGCCAAGGCTGTGGAGAGAGTTGGAACCACAGAGTTCATCTTCAAGAAGCCAAACGTTTCTGGCAAATCTACAGATCTTGACAATCTTGGGGTCTCTCGAAATGGTCCAAGGCTGTCTGAGGCATTGTCTAAAACACATTTCAAAGGGCTTGCAGGAGACTTCAGAATGGTTGAAGGGCAATTGAAATCATCAACTTATGAGATTATAAATATCAATCATGAAAGGAATATTACAGTGGTTGGATTCTGGACACCAGAAAATGGACTGACACAAACCTTAGACTCCATGAAAATGAGCTCAAACACTTCTGTTGCAAATCTTAGCCACATCATGTGGCCAGGAGATGATTCCAATTATTTCAATCTCCCAAAAGGTTGGGTCACTCCAACAAATGAAAAGAAGCTGAAATTTGGAATTCCAGTTAAATCTGGGGTCAGTAAGTTTATTAGAGAAATAAGGGACCCAGTGACTAACAGGACAAAGAAAACAGGGTACAGCATCGATATCTTTGAAGCTGTAATCAAAGCACTACCGTATGCTGTTTCATATGAATACATTCGGTTTGAAAATGAAGGAGTAATGGCTGGTAGCTACGAGGACATGGTCAAGCAAGTATACTTGGGGGTATACGATGCGGTCGTAGGAGATGTATCCATTAGAGAAAGCAGATCCCAATATGTAGACTTCACATTGCCATACTCTGAAGCTAGCGTGTCAATGGTTGTACTATTTCGAGATAACAAGAACAAAGCTTGGCTTTTCTTGAAGCCTTTGTCATTGAACCTTTGGTTGACAAGTGCTTTCTTTTTTGCCTTCATTGGACTGGTCATCTGGATTCTTGAGCACAGAATCAATGAAGATTTTAGAGGTCCTCCCTCGCACGAAATCGGGACAAGCTTCTGGTTTGCTTTCTCAACTATGGTGTATGCTCAAAGGGAGAAGGTGGAAAGCAACTTGGCTAGATTTGTGGTAATAGTATGGCTATTTGTGGTGCTCATATTGACTCAGAGTTACACGGCCAGTCTTACGTCGCTACTGACAGTTCAAAAACTGGAGCCAACTTTTACTGATATGAACCAGCTGAAGGAGCAGAAGGTGAATGTTGGATACCCAAATGGTTCTTTTGTTCAAGAATTGCTGATAGCTCAAGGTTTTGATAGATCCAAGCTTGTAATCTATAACAATATGGCACATTGTGGATCATTGTTCTTAAATGGGACCATAGCTGCTGCCTTTGATGAAATCCCTTACCTCAAGGTTCTTACCACAACATATTGCACCAATTGCACCATCGTCGGTCCCACAATGAAATCGAACGGCTTTGGCTATGTCTTCCCCAAGGGGTCTCAACTCGGACGCGATGTTTCCAAGGGAATACTTGATGTAATGGAGAGTGGAGTTCTGCAAGAGATTGAAAACAAATGGTTTAAAGGCAACATCAGCAGCCCTGATCCCAATAGCTTGATTTCCACCACACTTGGGCTTGAAAGCTTTTGGGGGTTGTTTCTTGTTACAGGAGCTGTATCTTCATCTGCACTCATTGTAGCTCTGGCCAGTTTTCTCTATGAACACAGACATGTCTTGAAGCTTTCCACTCTCTCAATGTGGAAAAGGTTTCTTCTTCTCTTGAAAATTTTCGACGAGAAAGACCTGACTTCACCGGCGTTGCGAAAGAATCGTCAAGACGAAAGCCCGGAAGTTAAAGATATCAGATTTGAACCTCATCCCAGCCCTTCCTGTGATTCAAGCTACAGAAATGGAGGACTTTCGCCTTGTAACTTTGATGATTTCAATGGTGGTCAGATTGCAACTCCTCAACCATCACCAAGCAGGTAA | 2799 | 43.37 | MESPTVFSIFIFLCIGLRAFSAMADDEAVTVKVGVVLDSDSSIGKMGLSFMEMALSDFYGFHGNYKTRLALFPKNSMGDVVEATAAALELIKNEEVEAIVGPQSSTQATFMADLGKKSHVPVISFSATSPSLDSHRNPYFFRATQIDSSQAKPIAAIFKAFDWRQVVLIHTDDEFGEGILPSMRDALLEVNTRVAYETAIPQSASDDRIAKELYKLMTMQTRVFVVHMLPELGSRVFAMAKEIGMMGSGYVWIITDGMSNFLSRIDDSAMEAMSGALGVRTYIPRTDKLEDFQMRWRRKFEKEVSELNIFGLRAYDATVALAKAVERVGTTEFIFKKPNVSGKSTDLDNLGVSRNGPRLSEALSKTHFKGLAGDFRMVEGQLKSSTYEIININHERNITVVGFWTPENGLTQTLDSMKMSSNTSVANLSHIMWPGDDSNYFNLPKGWVTPTNEKKLKFGIPVKSGVSKFIREIRDPVTNRTKKTGYSIDIFEAVIKALPYAVSYEYIRFENEGVMAGSYEDMVKQVYLGVYDAVVGDVSIRESRSQYVDFTLPYSEASVSMVVLFRDNKNKAWLFLKPLSLNLWLTSAFFFAFIGLVIWILEHRINEDFRGPPSHEIGTSFWFAFSTMVYAQREKVESNLARFVVIVWLFVVLILTQSYTASLTSLLTVQKLEPTFTDMNQLKEQKVNVGYPNGSFVQELLIAQGFDRSKLVIYNNMAHCGSLFLNGTIAAAFDEIPYLKVLTTTYCTNCTIVGPTMKSNGFGYVFPKGSQLGRDVSKGILDVMESGVLQEIENKWFKGNISSPDPNSLISTTLGLESFWGLFLVTGAVSSSALIVALASFLYEHRHVLKLSTLSMWKRFLLLLKIFDEKDLTSPALRKNRQDESPEVKDIRFEPHPSPSCDSSYRNGGLSPCNFDDFNGGQIATPQPSPSR | 932 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 41280177 | 41284118 | + | Lag0016793.1 | Lac12g2421 | 591018 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac12g2421 | 932 | PRINTS | Metabotropic glutamate GPCR signature | 166 | 183 | IPR000337 | GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro) | |
Lac12g2421 | 932 | PRINTS | Metabotropic glutamate GPCR signature | 99 | 125 | IPR000337 | GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro) | |
Lac12g2421 | 932 | PRINTS | Metabotropic glutamate GPCR signature | 131 | 150 | IPR000337 | GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro) | |
Lac12g2421 | 932 | PRINTS | Metabotropic glutamate GPCR signature | 150 | 166 | IPR000337 | GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro) | |
Lac12g2421 | 932 | FunFam | Glutamate receptor | 572 | 702 | - | - | |
Lac12g2421 | 932 | SUPERFAMILY | Voltage-gated potassium channels | 579 | 667 | - | - | |
Lac12g2421 | 932 | SUPERFAMILY | Periplasmic binding protein-like II | 444 | 800 | - | - | |
Lac12g2421 | 932 | Gene3D | - | 572 | 700 | - | - | |
Lac12g2421 | 932 | Gene3D | - | 726 | 804 | - | - | |
Lac12g2421 | 932 | MobiDBLite | consensus disorder prediction | 878 | 932 | - | - | |
Lac12g2421 | 932 | Pfam | Ligand-gated ion channel | 799 | 828 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lac12g2421 | 932 | PIRSF | IGluLR_plant | 2 | 906 | IPR017103 | - | |
Lac12g2421 | 932 | FunFam | Glutamate receptor | 455 | 573 | - | - | |
Lac12g2421 | 932 | CDD | GluR_Plant | 454 | 797 | - | - | |
Lac12g2421 | 932 | Gene3D | - | 343 | 455 | - | - | |
Lac12g2421 | 932 | FunFam | Glutamate receptor | 150 | 309 | - | - | |
Lac12g2421 | 932 | MobiDBLite | consensus disorder prediction | 918 | 932 | - | - | |
Lac12g2421 | 932 | Pfam | Receptor family ligand binding region | 51 | 394 | IPR001828 | - | |
Lac12g2421 | 932 | CDD | PBP1_GABAb_receptor_plant | 32 | 414 | IPR044440 | - | |
Lac12g2421 | 932 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 481 | 580 | IPR001638 | - | |
Lac12g2421 | 932 | Gene3D | - | 148 | 315 | - | - | |
Lac12g2421 | 932 | Gene3D | - | 456 | 571 | - | - | |
Lac12g2421 | 932 | SUPERFAMILY | Periplasmic binding protein-like I | 30 | 435 | IPR028082 | - | |
Lac12g2421 | 932 | SMART | GluR_14 | 455 | 799 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Lac12g2421 | 932 | PANTHER | OS06G0188250 PROTEIN | 11 | 483 | IPR015683 | - | |
Lac12g2421 | 932 | MobiDBLite | consensus disorder prediction | 878 | 896 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g2421 | Lac-Chr12:41280177 | Lac6g0568 | Lac-Chr6:4734738 | 1.20E-236 | dispersed | |
Lac12g2421 | Lac-Chr12:41280177 | Lac12g0601 | Lac-Chr12:6408862 | 1.50E-122 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac12g2421 | K05387 | - | csv:101213301 | 1575.45 |