Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2425 ATGAGTCGGGAGCAGAAGCGGGGGAAGCAGGACAAAGGTTCTGATGATGTCCAGAAGGTGATTGTTGCAGTGAAGGCTTCCAAAGAAATTCCTAAAACTGCATTGGTTTGGGCGTTGACTCATGTTGTTCAAATTGGAGATTGCATAACTCTGCTGGTTGTTGTCCCTTCTCAAAGCTCTGGAAGAAAATTTTGGGGTTTTCCGAGATTTGCCGGGGACTGTGCAAGTGGTCACAAGAAAGCTCACTCTGGAACTAGCTCGGAGCAGAAATGTGATATTACCGATTCCTGCTCGCAGATGATCCTTCAGCTTCATGATGTTTATGATCCAAATAAGATAAATGTGAAAATTAAAATTGTTTCGGGGTCGCCTAGTGGGGCCGTAGCTGCTGAGGCTAAGAGAGCTCAAGCTAGCTGGGTTGTATTAGACAAACAGCTCAAACACGAGGAGAAATGTTGCATGGAAGAGTTACAGTGCAACATTGTGGTAATGAAGCGATCTCAACCGAAAGTTCTTCGCTTGAACCTGGTTGGGTCTCCAAAGAAAGAACCAGAAGTGCCTTCTCCCTTACCTTCTGATATAGATGAAGGGTCTGAAAGCCACCAGAAAGAAAATAATGATCCTCTGGATTTTATTCGGGGACCAGTCGTGACCCCTAATAGCAGTCCAGAGTTGGGCACACCTTTTACCGCTACCGAAGCTGGAACATCATCGGTATCAAGCTCAGATCCTGGAACTTCACCATTTTTCAACTCTGAAATAAATGGAGACACAAAGAAAGAGGAATTGTTTGTTATTAAGGAAAATAAAGAACTTGATGCTGCAAGTTCAGACTCGGATATTGATAATTTATCTGTATCTTCGGGGAGCTTAAGATTCCAACCATGGATGACAGAGTTCCTAAGTTCTCATCTTCAATCCTCACAACTCATAAGTGGAAGGTCACAGAGGTGCGATGATAGGAATCAAGTGTCAACAAGAAAATCTTTTCTACCAAAGTCTTCAAAACTTGATAGAGAATCGAGTATTGGAATGTCAAGCCATAGAAGCGACAATGACTTCCATGGAGACGTACGAGATGCTGTTTCATTATCAAGGAACTCGCCACCAGGCCCTCCTCCATTGTGTTCGATATGTCAACACAAGGCACCAGTTTTTGGAAAGCCTCCAAGGTGGTTCAGCTATGCCGAGCTGGAGCTTGCTACGGGTGGGTTTTCACAAGCCAACTTTTTGGCAGAAGGAGGATATGGATCTGTTCACAGAGGGGTACTCCCGGATGGACAGGTGGTCGCTGTCAAGCAGCACAAACTAGCTAGTTCTCAGGGAGACCTTGAATTTTGTTCAGAAGTCGAAGTTCTTAGCTGTGCACAGCATCGAAACGTTGTTATGTTGATTGGCTTTTGTATAGAGGAGAAAAGAAGGTTGTTGGTTTATGAATACATCTGCAATGGCTCATTGGATTCTCATTTATATGGACGCCAACAAGAGCCGTTAGAATGGTCTGCACGACAAAAAATTGCAGTGGGAGCTGCAAGGGGGCTACGATATCTCCACGAAGAATGTAGAGTCGGTTGCATTGTTCACCGGGATATGCGGCCAAACAACATTCTTATCACCCATGATTTTGAACCACTGGTTGGAGATTTTGGCCTTGCGAGGTGGCAGCCCGACGGAGATACCGGTGTTGAGACAAGAGTTATTGGAACATTTGGGTATTTGGCTCCAGAGTATGCTCAAAGTGGCCAAATCACAGAAAAAGCTGATGTTTATTCCTTTGGCGTGGTACTGGTTGAGCTAATCACCGGAAGAAAAGCCGTGGACCTTAGTCGGCCGAAAGGTCAACAGTGTCTCACCGAATGGGCACGCCCCCTGTTGGATGAACTTCTCATTGATGAACTGATTGATCCAAGGTTGGGAAATAGCTTCGCAGAGCATGAAGTGTACTGCATGCTGCACGCCGCATCGTTATGCATCCGAAGAGATCCTAACGCAAGGCCTCGTATGTCACAGGTTTTACGGATTCTGGAGGGCGACCTCGTCATGGATGCTAATTACCTATCAACTCCCGGATACGACGTGGGAAATCGGAGTGGTCGGATGTGGACCGAGCAGCAGCAGCAGCAGCATCAGCATCAGCAAAACTACAGTGGCTCCTTATCAGATGAGACCCTAGAGAGGTTCAATGAAAAGGTCTGTCTTGAAAGTTTAAGACCAGGTTACTGGGAAAGGGACAAGACAAGGAGGACTTCAAGTGGAAGTGATTTGTAA 2268 45.81 MSREQKRGKQDKGSDDVQKVIVAVKASKEIPKTALVWALTHVVQIGDCITLLVVVPSQSSGRKFWGFPRFAGDCASGHKKAHSGTSSEQKCDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPSGAVAAEAKRAQASWVVLDKQLKHEEKCCMEELQCNIVVMKRSQPKVLRLNLVGSPKKEPEVPSPLPSDIDEGSESHQKENNDPLDFIRGPVVTPNSSPELGTPFTATEAGTSSVSSSDPGTSPFFNSEINGDTKKEELFVIKENKELDAASSDSDIDNLSVSSGSLRFQPWMTEFLSSHLQSSQLISGRSQRCDDRNQVSTRKSFLPKSSKLDRESSIGMSSHRSDNDFHGDVRDAVSLSRNSPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGYGSVHRGVLPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEEKRRLLVYEYICNGSLDSHLYGRQQEPLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLSRPKGQQCLTEWARPLLDELLIDELIDPRLGNSFAEHEVYCMLHAASLCIRRDPNARPRMSQVLRILEGDLVMDANYLSTPGYDVGNRSGRMWTEQQQQQHQHQQNYSGSLSDETLERFNEKVCLESLRPGYWERDKTRRTSSGSDL 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41339452 41343884 + Lag0016797.1 Lac12g2425 591022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2425 755 Gene3D HUPs 3 151 IPR014729 -
Lac12g2425 755 MobiDBLite consensus disorder prediction 698 717 - -
Lac12g2425 755 ProSiteProfiles Protein kinase domain profile. 405 686 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2425 755 Gene3D Phosphorylase Kinase; domain 1 377 480 - -
Lac12g2425 755 Pfam Protein kinase domain 409 672 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2425 755 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 377 480 - -
Lac12g2425 755 SUPERFAMILY Protein kinase-like (PK-like) 389 686 IPR011009 -
Lac12g2425 755 MobiDBLite consensus disorder prediction 342 357 - -
Lac12g2425 755 PANTHER OS01G0750732 PROTEIN 136 693 IPR050885 -
Lac12g2425 755 MobiDBLite consensus disorder prediction 696 717 - -
Lac12g2425 755 MobiDBLite consensus disorder prediction 176 254 - -
Lac12g2425 755 ProSitePatterns Tyrosine protein kinases specific active-site signature. 526 538 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g2425 755 FunFam Dual-specific kinase DSK1-like 11 165 - -
Lac12g2425 755 CDD STKc_IRAK 411 677 - -
Lac12g2425 755 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 481 684 - -
Lac12g2425 755 MobiDBLite consensus disorder prediction 220 254 - -
Lac12g2425 755 Gene3D Transferase(Phosphotransferase) domain 1 481 685 - -
Lac12g2425 755 MobiDBLite consensus disorder prediction 312 357 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2425 Lac-Chr12:41339452 Lac3g1006 Lac-Chr3:8195040 5.20E-227 dispersed
Lac12g2425 Lac-Chr12:41339452 Lac2g0245 Lac-Chr2:1855606 1.40E-155 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85828 PF07714 PK_Tyr_Ser-Thr 1.40E-40 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2425 - - - 0.0