Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2427 ATGGCAATGGAGGGAAAGCAGAAGTTCTTCCATGGCACCCTCGAAGTTACCGTCTTTCATGCAACAGCATACACACCGCCGTCGCCTCTCGATTGCTTATTTGCTGGAGGAAAGCGTAGCTATGTGACTATCAAGATAGACAACAAAGAGGTTGCCCAGACGAGCCATGAATACGACCGTGTTTGGAACCAGACGTTTCGAGTTCTATGTGCACATCCATTGACTTCTACCGTCACCATTACAATGAAAACATCTCGTTCTGTCTTAGGTAGATTCCAGATCCAAGCCCAACAGATTTTGAAAGAAGCGAGTTTTATCAATGGTTTCTTTCCACTTCTTATGGAAAATGGGAAGCCGAGTCCAGAGCTTAGACTTCGATTCATGCTATGGTTTAAACCGGCAGTATATGAATTAAGTTGGAAAAAGATGCTGGGAAATGGAGAATACAAGGGGCTGAGAAATGCAACATTTCCTCTAAGGTCCAACTGTCATGTGACTCTATATCAAGATGCTCACCACGTCCCTACTTTTCGACCTCCATTTCACGGTTCGAGTACACCAAGAAGGCTATGGGAAGATGTATACAAGGCCATAGATAATGCAAAGCATTTGGTTTACATTGCAGGCTGGTCCTTCAATCCAAAGATGGTGCTGGTAAGGGATTCTCAGACTGATATACCCTATGCTTTAGGAGTAAAGCTTGGTGAGCTGTTGAAGCAAAAGGCAGAGGAGGGAGTAGCCGTGAGACTACTGATTTGGGATGATGAAACATCCCTTCCCATCATCAAGAATGCCGGGATAATGAAAACACATGACGAAGATGCTCGGGCATATTTCTTGCACTCGAAAGTTATATGTAGGTTGTGCCCCAAATTACATCCTATGTCCCCTCCAATTTTCTCTCATCATCAGAAAACCATAATCGTAGATGCTCAAACTCACATCAATGCACGAAACAGGGAGATTATGAGTTTCATTGGGGGTTTAGATCTTTGTGATGGCCGCTACGACACAGAACAACATTCGTTGTTCCATACTTTGAATACAGAATCCCACTGCTGTGATTTCTACCAGACGAGTATATCAGGTGCCAAGCTTCAAAAAGGAGGGCCAAGAGAGCCATGGCATGATGTTCACGCTTGTGTAACAGGTGAAGCTGCTTGGGACATATTAACAAACTTCGAGCAACGATGGACCAAGCAATCAGATGCTTCGTTGCTAGTCCCAACAAGCATCTTATTAAAACTGATGCCCCAGCTCGAATCAAACACAAGCCCACAAAAGGATTGGCATGTGCAAGTTTTTCGATCTATTGATCACTTATCTGCCAGCCAAGTGTTCAGAAACTTGACTGTTGAACGAACCATCCATGAAGCTTACGTTGAAGCTATCAGGCGAGCCGAGAGATTCATTTACATTGAAAACCAATATTTCATAGGAGGGTGCCACTTGTGGGACAAAGATCAACACTGCGGATGCACGAATTTGATACCAATCGAAATTGCACTCAAGGTGGCTAATAAGATCAAGGCAAGGGAGAGGTTTGCAGTTTACATAGTGATTCCAATGTGGCCAGAAGGACCACCAGAGAGTGAATCAGTTGAGGATATGCTACATTGGACAAGGCAGACAATGAAAATGATGTATAGACTGATTGGAGAAGCAATCCAAGAAACTGGAGAGAAGGCCCATCCAAGAGACTACTTGAATTTCTTCTGCCTTGCAAACAGAGAAGAAGAGACAAAATGGGACTTTGTTCCCCCACACAGTCCCCAACATGCAACACAGTACTGGAATGCCCAACAACACAGAAGGTTCATGGTCTATGTCCATTCCAAGGTCATGATAGTGGACGATTTGTACATTCTGATCGGATCCGCCAACGTAAACCAGAGATCCATGGACGGAGAGCGAGATACAGAGATAGCAATCGGATGCTACCAATTAGAAAACGACGGAGAAGAGTTACCAAATGGAAGAGACATTTCAACATTCCGATTGTCGCTTTGGTACGAACATACTCAACGATTCGAAGATCTGTTCTTAAAGCCCGAAAACTTGCAATGCGTTCAAAGGGTTCGTTCAATAGCGGATGAATCATGGGAAATTTACAGTGGAGATGAAATTGCAGACATGAAAGGAGTTCATCTCGTAACGTACCCGGTGAAGGTGAAACAGGACGGCTCGATCGAGGATTTGGAAGAAAATGGAGGCCATTTTCCTGATACGAAATGCCCAATCAAAGGAAGAAGATCGATGCTCTTGCCGCCGATCTTCACGACTTAG 2286 44.23 MAMEGKQKFFHGTLEVTVFHATAYTPPSPLDCLFAGGKRSYVTIKIDNKEVAQTSHEYDRVWNQTFRVLCAHPLTSTVTITMKTSRSVLGRFQIQAQQILKEASFINGFFPLLMENGKPSPELRLRFMLWFKPAVYELSWKKMLGNGEYKGLRNATFPLRSNCHVTLYQDAHHVPTFRPPFHGSSTPRRLWEDVYKAIDNAKHLVYIAGWSFNPKMVLVRDSQTDIPYALGVKLGELLKQKAEEGVAVRLLIWDDETSLPIIKNAGIMKTHDEDARAYFLHSKVICRLCPKLHPMSPPIFSHHQKTIIVDAQTHINARNREIMSFIGGLDLCDGRYDTEQHSLFHTLNTESHCCDFYQTSISGAKLQKGGPREPWHDVHACVTGEAAWDILTNFEQRWTKQSDASLLVPTSILLKLMPQLESNTSPQKDWHVQVFRSIDHLSASQVFRNLTVERTIHEAYVEAIRRAERFIYIENQYFIGGCHLWDKDQHCGCTNLIPIEIALKVANKIKARERFAVYIVIPMWPEGPPESESVEDMLHWTRQTMKMMYRLIGEAIQETGEKAHPRDYLNFFCLANREEETKWDFVPPHSPQHATQYWNAQQHRRFMVYVHSKVMIVDDLYILIGSANVNQRSMDGERDTEIAIGCYQLENDGEELPNGRDISTFRLSLWYEHTQRFEDLFLKPENLQCVQRVRSIADESWEIYSGDEIADMKGVHLVTYPVKVKQDGSIEDLEENGGHFPDTKCPIKGRRSMLLPPIFTT 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41355974 41358844 + Lag0016799.1 Lac12g2427 591024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2427 761 Gene3D C2 domain 2 131 IPR035892 -
Lac12g2427 761 Gene3D Endonuclease Chain A 174 430 - -
Lac12g2427 761 PIRSF PLD_plant 2 761 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Lac12g2427 761 Pfam Phospholipase D C terminal 678 750 IPR024632 -
Lac12g2427 761 SMART pld_4 300 335 IPR001736 GO:0003824(InterPro)
Lac12g2427 761 SMART pld_4 606 633 IPR001736 GO:0003824(InterPro)
Lac12g2427 761 Pfam Phospholipase D Active site motif 609 633 IPR001736 GO:0003824(InterPro)
Lac12g2427 761 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 9 128 IPR035892 -
Lac12g2427 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 298 335 IPR001736 GO:0003824(InterPro)
Lac12g2427 761 Pfam C2 domain 12 109 IPR000008 -
Lac12g2427 761 PANTHER PHOSPHOLIPASE D 38 744 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lac12g2427 761 SUPERFAMILY Phospholipase D/nuclease 146 409 - -
Lac12g2427 761 SUPERFAMILY Phospholipase D/nuclease 423 689 - -
Lac12g2427 761 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 606 633 IPR001736 GO:0003824(InterPro)
Lac12g2427 761 Gene3D Endonuclease Chain A 445 652 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2427 Lac-Chr12:41355974 Lac4g2792 Lac-Chr4:46650671 3.70E-172 dispersed
Lac12g2427 Lac-Chr12:41355974 Lac11g0678 Lac-Chr11:7033408 2.20E-172 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2427 K01115 - csv:101206396 1499.95