Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2428 ATGGATTCTTTCTGGTTTTTTGTGCAGCTCATCACAGCTGCAGCTTTCATAATATCTTCCACAATCATAATCTTCAAAACCTTCATCTCCTCCCCTCCTTCCCTTCCTTCCGGCTCCCTCGGCCTCCCCGTCGTCGGTGAAACCCTCCGCTTCATCGCCTCCGCCTACTCTCCCCGTCCCGAGACCTTCATGGACATACGTCGCCGTCGGTATGGGAATGTTTTCAAGTCCCATATATTTGGAAGTCCAACAATTGTTTCAACTGATGCTGAAGTGAGTAGGTTTATTCTACAAAGTGATGCAAAGGCTTTTGTCCCATCTTATCCAAAATCTTTGACAGAATTGATGGGGAAGTCTTCTATTTTGCTCATCAATGGCACTTTTCATAGGAAAATTCATGGCCTCATTGGAGCTTTCTTCAAATCATCTCATCTCAAAGCTCAATTAACCATAGACTTGCAAAAATATCTTCAAAATTCCATCTCTATTTGGAGTTCTTCTCATCACAATCCTATCCACATACAAGATGAAGCCAAAAATGCCAAAAGGAAAATGGTTGGATTTGTGCAAGAAATGATACAATCTAGAAGAAAGAAGATGAAAGAAAATTTGAAAAATATAGTTCTTCCAAAGGATGTTGTGGATGTTTTGTTGAATGATGGAAGCCAACAAGTTACAGATGAACTGATAGCAGAAAATATGATTGATATGATGATTCCAGGCCATGATTCAGTCCCAATCCTCATAACTTTGGCCATAAAATACCTTTCTGATTGTCCATCTGTCCTTCAACATTTGACGGAAGAAAACATGGAGTTGAAAAAACTGAAAACTCAGCTTGGAGAGCCATTGAAATGGAATGATTACTTGTCATTACCATTTACACAAAATGTCATATCGGAGACATTAAGGATGGGAAACATTATAACAGGAGTGATGAGAAAGGCCATGAAAGACATTGAAATAAAAGGGCATTTGATACCTAAAGGATGGTGTGTCCTTATATATTTTAGGTCAGTTCATCTTGATGAAAAGCACTTTGAAAGCCCTTACAATTTCAATCCATGGAGGTGGCAAAATAAAGACTCAAACAGCTCTAATTTCACTCCTTTTGGAGGGGGATTAAGATTGTGTCCTGGACTTGACTTGGCTAGATTGGAAGCTTCCATTTTCTTACACCATTTTGTCACTGAATTCAGGTGGGTGGCTGAGGAAGACAAGATTATCAACTTCCCAACAGTAAGAATGAAGAAAGGAATGGCAGTTTGGGTAAAGAAGAGAGAAGACAACTCTTGA 1296 39.51 MDSFWFFVQLITAAAFIISSTIIIFKTFISSPPSLPSGSLGLPVVGETLRFIASAYSPRPETFMDIRRRRYGNVFKSHIFGSPTIVSTDAEVSRFILQSDAKAFVPSYPKSLTELMGKSSILLINGTFHRKIHGLIGAFFKSSHLKAQLTIDLQKYLQNSISIWSSSHHNPIHIQDEAKNAKRKMVGFVQEMIQSRRKKMKENLKNIVLPKDVVDVLLNDGSQQVTDELIAENMIDMMIPGHDSVPILITLAIKYLSDCPSVLQHLTEENMELKKLKTQLGEPLKWNDYLSLPFTQNVISETLRMGNIITGVMRKAMKDIEIKGHLIPKGWCVLIYFRSVHLDEKHFESPYNFNPWRWQNKDSNSSNFTPFGGGLRLCPGLDLARLEASIFLHHFVTEFRWVAEEDKIINFPTVRMKKGMAVWVKKREDNS 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41363118 41368563 - Lag0016800.1 Lac12g2428 591025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2428 431 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 371 380 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Lac12g2428 431 PRINTS E-class P450 group I signature 368 378 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac12g2428 431 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac12g2428 431 PRINTS E-class P450 group I signature 296 314 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac12g2428 431 PRINTS E-class P450 group I signature 378 401 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac12g2428 431 PRINTS E-class P450 group I signature 336 360 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac12g2428 431 PANTHER CYTOCHROME P450 26 35 179 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER)
Lac12g2428 431 Gene3D Cytochrome P450 27 427 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac12g2428 431 Pfam Cytochrome P450 155 408 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lac12g2428 431 SUPERFAMILY Cytochrome P450 30 427 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1120 Lac-Chr11:13871492 Lac12g2428 Lac-Chr12:41363118 5.00E-26 dispersed
Lac12g2428 Lac-Chr12:41363118 Lac1g2963 Lac-Chr1:50416042 4.40E-106 dispersed
Lac12g2428 Lac-Chr12:41363118 Lac4g2977 Lac-Chr4:48035012 8.20E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2428 K12638 - csv:101212581 634.795