Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2443 ATGGAGGAAAATTTGTCGAATTTAACTTCAGCTTCTGGTGAAGCTAGTGCCTGCTCCGGCAACCGTTCCGATCAGATTCCGGCGAACTATTCCGGCGGCGGCCAGTATTTTTCTGCCCCACCACCACCAAAAAAGAAGAGAAACCTCCCCGGAAATCCAGACCCGGATGCGGAAGTGATAGCTTTGTCGCCGAAGACGCTAATGGCGACGAATAGATTCGTGTGCGAGATCTGCAACAAGGGGTTTCAGAGAGATCAGAATCTTCAGCTTCATAGAAGAGGGCACAATTTGCCATGGAAGTTGAAGCAAAGAGCAAACAAAGAGGTGATAAGGAAGAAAGTTTATGTGTGTCCAGAAACAAGCTGTGTTCACCATGATCCATCAAGGGCTCTTGGAGACTTGACAGGGATCAAGAAGCACTTTTGCAGAAAGCATGGTGAGAAGAAATGGAAATGTGATAAGTGCTCTAAGAGGTACGCAGTTCAATCAGATTGGAAAGCACATTCTAAGACTTGTGGCACCAGAGAGTACAGATGTGACTGTGGAACCCTTTTCTCAAGGAGGGATAGTTTCATCACCCACAGAGCATTTTGTGATGCTTTAGCAGAGGAAAGTGCAAGAGCCATTACATCAAACCCAATACTAATCACCAATAACAACAACAATAACCAAAATCAAAACCCTCCACTAATTTCCACTCCCATTTCTTCAATCTCTCACTTAAACTTCCAAACACAACCCCACTTCAACAACAACAACAACAATCCCTTAGACATCAACTCATTTTCCTTAAAAAAAGAACACCACCATCAACAAAACTCACCCAATAACAACAACAACAACAACAACAATTTCATTCCTCCATGGCTTGCCCAAGACCACCTTAATCACCATCATCAAAACCTCATCTTAAACCCTAATAACAATCTTGGACCCACTTCCCTTCATCATCACCATCTTCAAAGTGCTTCCCCTTCTCTTCCTCACATGTCAGCCACAGCACTTCTCCAGAAAGCAGCTCAAATGGGAGCTACCATGAGCAGCAACAACAATAATAATATTGCTGAACAGCATCACGTGCCTGATTCTTCTGCCACCAACAATCCAAGTTGTAATTTTGGCCTTAACTTGTCCTCCTCACGTGACAACAATCAGATTTTGATGGGCAGTGAAGGTGCAGGGCTCTCTCATGCACTGCCACACTACAGGAACAAATCCAACAATGATCATAATAATAATAATAATGTTGATGTTGGTCTTCTTGTTGGTCATTCTAATTCTTCTTCACTTCTTCTTCAAAGCACTTTCATCAGCAACAGCAACAGCAACAGCTCTACTGCTTTTTCTCCCAGTGCTTTTGGAGGGGCTTCTTTTGAAATAGATGGATTTGGAGGGGTTTTGAAGAAAGATAATAGTGCAATTACAACAACAAGTGAAGGGTTGAGTACAAGAGATTTCTTGGGGCTGAGAGCAATTTCTCACAGTGAGTTTTTGAGTAATATGGCAGCTGCAGCTGGTTATGGTAATTGCATGAATAATGGGGCTGGTCAAAGCCCTCAAAGTCAAATTCAAAAGCAACCCAGCTGGCAAGGTTAG 1596 43.05 MEENLSNLTSASGEASACSGNRSDQIPANYSGGGQYFSAPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRANKEVIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITSNPILITNNNNNNQNQNPPLISTPISSISHLNFQTQPHFNNNNNNPLDINSFSLKKEHHHQQNSPNNNNNNNNNFIPPWLAQDHLNHHHQNLILNPNNNLGPTSLHHHHLQSASPSLPHMSATALLQKAAQMGATMSSNNNNNIAEQHHVPDSSATNNPSCNFGLNLSSSRDNNQILMGSEGAGLSHALPHYRNKSNNDHNNNNNVDVGLLVGHSNSSSLLLQSTFISNSNSNSSTAFSPSAFGGASFEIDGFGGVLKKDNSAITTTSEGLSTRDFLGLRAISHSEFLSNMAAAAGYGNCMNNGAGQSPQSQIQKQPSWQG 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41534019 41536701 - Lag0016815.1 Lac12g2443 591040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2443 531 MobiDBLite consensus disorder prediction 265 289 - -
Lac12g2443 531 FunFam protein indeterminate-domain 5, chloroplastic-like 128 207 - -
Lac12g2443 531 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 149 173 - -
Lac12g2443 531 Gene3D Classic Zinc Finger 52 124 - -
Lac12g2443 531 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Lac12g2443 531 MobiDBLite consensus disorder prediction 273 289 - -
Lac12g2443 531 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 176 212 - -
Lac12g2443 531 SUPERFAMILY beta-beta-alpha zinc fingers 72 170 IPR036236 -
Lac12g2443 531 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 31 501 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac12g2443 531 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Lac12g2443 531 MobiDBLite consensus disorder prediction 1 32 - -
Lac12g2443 531 Gene3D Classic Zinc Finger 127 208 - -
Lac12g2443 531 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 111 145 - -
Lac12g2443 531 SMART c2h2final6 150 170 IPR013087 -
Lac12g2443 531 SMART c2h2final6 115 145 IPR013087 -
Lac12g2443 531 SMART c2h2final6 73 95 IPR013087 -
Lac12g2443 531 MobiDBLite consensus disorder prediction 346 367 - -
Lac12g2443 531 MobiDBLite consensus disorder prediction 1 57 - -
Lac12g2443 531 FunFam protein indeterminate-domain 12-like 52 121 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3025 Lac-Chr10:44810321 Lac12g2443 Lac-Chr12:41534019 7.30E-89 dispersed
Lac12g2443 Lac-Chr12:41534019 Lac1g2114 Lac-Chr1:42624689 4.60E-89 dispersed
Lac12g2443 Lac-Chr12:41534019 Lac4g2989 Lac-Chr4:48131014 8.70E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23112 None None None None Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2443 K25870 - csv:101204728 620.928