Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2456 ATGATGGAAGAGATGTCTCCTGCTGTTTCCTTGACCCTTAGTTTGGGTAATCCAAAGTCTGATAGCTCAGGAAGTCCCAGCCATGTCGAATTTACGCGGCTGAAGTTGGTGACAGACACGGTTAACTTGTTCTCTGCATCGTCCCCTGACTCGGGTTCTATTGGTAATGGTAGTTGCCATGATTTTGATGGTATAGTAGACAGCATAACTGTGTCTCAAAAGAGTGACGATGGTCGAGGTAGAGACTGTTTTTGGGGGTTGTTGCCGGAGAATGGCACGAATTTGACTGTAGATAAGGAAGATGCAGCCTTATCTACTATGGATGACCCTGATGAAATGATGGATGATGGGTTGTTTGCAATTGATGGTGGTTCAAATATTAATGTGCAAGAAGTTGTGAAAATTGGAGATGTTAGTAATGGTCATATTGTTGCCAAGGCTATCATCTTGGTGGAATCCGGGAAGATTCCTACTAGTGAACTTATCGTTGCAACGGTGAGTCCAGACTTAAAAGTATCTCCTTCGTCGGAGCTAAACGTCCCCGCGGTAGTTTTCCAATCGAAAGGGGGGAATGGTGTTCATAAAAGCATTCGTAGTGTCTTTGAACGAGACTGTGTCCCCCTTTGGGGTTCTGTATCGATTTGTGGTAGAAGACCAGAAATGGAAGACGCAATTGCCGCGGTTCCTTGTTTTTCGAAGATTCCTATCAAAATGCTTGTAGGAAATGGTTTGGTTAATGGAATGGGTCAAAGTTTAACACATCTCAACAGCCACTTTTTTGGTGTTTATGATGGACATGGGGGCTCTCAGGTTGCTGATTATTGTCGAGAGCGCTTACACTTGGCATTAGCTGAAGAGATAGGAGGATTTAAACAAAATCTAAATAATGGAAGCAATGGAGAGAACTGGCAGCAGGATTGGGAGAGAACCTTCAACAACTGCTTTCTTAGGGTGGATGATGAAATAGAAGGAAAAGTTTGTAGAACAGTCAGTGGGAGCGATGGAGATGTTTCCGGTACTAGCTTCGAGCCTGTAGCCCCGGAAACTGTTGGCTCTACTGCTGTTGTTGCCTTGGTCTGTTCATCACACATCATAGTTGCAAACTGTGGTGATTCAAGAGCAGTCCTATGCCGTGGCAAAGAACCTATGGCGCTATCAGTTGATCATAAACCAAATCGGGAAGATGAATACGCTAGGATCGAATCATCCGGAGGCAAGGTCATCCAGTGGAACGGACATCGTGTGTTCGGCGTTCTTGCAATGTCAAGATCCATTGGTGACAGATATTTGAAGCCATGGATTATTCCTGACCCCGAAGTCATGTTCGTCCCTCGTGCGAAAGAAGACGAATGTCTTATATTAGCCAGCGATGGCCTGTGGGATGTGATGACAAACGAGGAAGTCTGTGAAGTGGCTCGAAGGCGGATTCTGCTTTGGCACAAAAAACACGGGGCTTTGTCTCTTGCCGATCGGGGCACGGGAGTTGACCCAGCTGCACAAGCTGCAGCAGATTACCTCTCAATGCTTGCTCTCCAAAAGGGGAGCAAAGACAACATCTCCATCATTGTAGTGGACTTGAAAGCTCAAAGGAAGTTCAAGACCAAATCTTGA 1611 45.62 MMEEMSPAVSLTLSLGNPKSDSSGSPSHVEFTRLKLVTDTVNLFSASSPDSGSIGNGSCHDFDGIVDSITVSQKSDDGRGRDCFWGLLPENGTNLTVDKEDAALSTMDDPDEMMDDGLFAIDGGSNINVQEVVKIGDVSNGHIVAKAIILVESGKIPTSELIVATVSPDLKVSPSSELNVPAVVFQSKGGNGVHKSIRSVFERDCVPLWGSVSICGRRPEMEDAIAAVPCFSKIPIKMLVGNGLVNGMGQSLTHLNSHFFGVYDGHGGSQVADYCRERLHLALAEEIGGFKQNLNNGSNGENWQQDWERTFNNCFLRVDDEIEGKVCRTVSGSDGDVSGTSFEPVAPETVGSTAVVALVCSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYARIESSGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVMFVPRAKEDECLILASDGLWDVMTNEEVCEVARRRILLWHKKHGALSLADRGTGVDPAAQAAADYLSMLALQKGSKDNISIIVVDLKAQRKFKTKS 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41629940 41632197 - Lag0016828.1 Lac12g2456 591053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2456 536 SMART PP2C_4 198 524 IPR001932 -
Lac12g2456 536 FunFam Protein phosphatase 2C 16 196 536 - -
Lac12g2456 536 ProSiteProfiles PPM-type phosphatase domain profile. 208 526 IPR001932 -
Lac12g2456 536 PANTHER PROTEIN PHOSPHATASE 179 525 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac12g2456 536 CDD PP2Cc 210 526 IPR001932 -
Lac12g2456 536 MobiDBLite consensus disorder prediction 10 27 - -
Lac12g2456 536 MobiDBLite consensus disorder prediction 1 27 - -
Lac12g2456 536 Pfam Protein phosphatase 2C 230 519 IPR001932 -
Lac12g2456 536 SUPERFAMILY PP2C-like 199 527 IPR036457 -
Lac12g2456 536 ProSitePatterns PPM-type phosphatase domain signature. 259 267 IPR000222 GO:0043169(InterPro)
Lac12g2456 536 Gene3D - 195 536 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2456 Lac-Chr12:41629940 Lac6g0172 Lac-Chr6:1385544 1.90E-151 dispersed
Lac12g2456 Lac-Chr12:41629940 Lac7g2763 Lac-Chr7:46777990 6.20E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2456 K14497 - csv:101203499 985.711