Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2458 ATGGGAAACCAGAAGCAGAAGTGGACGCAGGAGGAAGAGGATGCACTATTGGCCGGCGTACAGAAGCACGGTCCCGGAAAGTGGAAGAACATTCTCAAAGATCCTGAATTCGCTCCGTTTCTCACTCATCGCTCGAACATTGACCTCAAGGACAAATGGCGTAATTTGAGTGTTAGCACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGGCTCCTAAAGCAAAAGCTATTGTTGCTCCTCCGCTTTCTAACAGCCAAAACTCTGCTCCTACTAGGTTTAATGCATCCGCTGATACTGCAGGGGATGATCCACCAAACAGCAGTACACAGGAAGGAAAAAATGTCCCAAGGTATCATACAATGATTTTTGAAGCCCTTTCAACCATAAAAGATTCAAATGGATGTGACATAGGCACAATTGTTAACTTTATTGAGCAAAGACATGAGGTGCCACAAAACTTTAGAAGGCAATTAAGCTCAAAGTTGAGGAGGCTTGTTTCACAAGGAAAGCTCGAAAAGGTTCAGAATTGCTACAAAGTAAAGAAAGACAATTCATTGGCAGTTAAAACTCCTACACCCAAACAAAAAGATGTCAGGCAACGGATATCACAATATACTACGGGAGGGTTGATGCCATCAGGGGAGACGGTGGAAGATGCAGCGAAAGCGGCTGCTTATAAAGTGGCTGATGCAGAGAACAAATCTTTCTTAGCTGCTGAAGCTGTCAAGGAGGCAGAGAGAATTGCAAAGATGGCTGAAGATACAGATACTGTGCTACAGATCATAAAAGAGATGTATGAAAAATGTTCTCGTGGTGAAATTGTTCTCTTGGCTTAG 837 43.49 MGNQKQKWTQEEEDALLAGVQKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTASQGSKEKSRAPKAKAIVAPPLSNSQNSAPTRFNASADTAGDDPPNSSTQEGKNVPRYHTMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRISQYTTGGLMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDTVLQIIKEMYEKCSRGEIVLLA 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41648611 41652260 + Lag0016830.1 Lac12g2458 591055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2458 278 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Lac12g2458 278 Gene3D - 111 199 IPR036388 -
Lac12g2458 278 FunFam Telomere repeat-binding factor 1 8 87 - -
Lac12g2458 278 FunFam Telomere repeat-binding factor 1 2 58 - -
Lac12g2458 278 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lac12g2458 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Lac12g2458 278 SMART sant 4 59 IPR001005 -
Lac12g2458 278 Gene3D - 8 80 - -
Lac12g2458 278 CDD SANT_TRF 6 56 - -
Lac12g2458 278 Pfam linker histone H1 and H5 family 116 175 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lac12g2458 278 MobiDBLite consensus disorder prediction 58 116 - -
Lac12g2458 278 SMART h15plus2 112 177 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lac12g2458 278 MobiDBLite consensus disorder prediction 80 115 - -
Lac12g2458 278 MobiDBLite consensus disorder prediction 1 20 - -
Lac12g2458 278 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Lac12g2458 278 PANTHER SINGLE MYB HISTONE 4 1 275 IPR044597 GO:0003691(InterPro)
Lac12g2458 278 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 182 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lac12g2458 278 SUPERFAMILY Winged helix DNA-binding domain 112 193 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2458 K09422 - - csv:101202785 488.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0862 Lac-Chr11:9258767 Lac12g2458 Lac-Chr12:41648611 3.20E-18 dispersed
Lac12g2458 Lac-Chr12:41648611 Lac1g2672 Lac-Chr1:47956081 1.40E-28 dispersed
Lac12g2458 Lac-Chr12:41648611 Lac5g2619 Lac-Chr5:44693250 4.80E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac5g2619 . 1 322 Single Myb Histone (SMH) Gene Family AT1G49950 58.8 7.7e-73 271.6
Lac1g2672 . 125 370 Single Myb Histone (SMH) Gene Family AT1G49950 54.7 1.5e-63 240.7
Lac1g2672 . 125 370 Single Myb Histone (SMH) Gene Family AT5G67580 53.2 7.7e-65 245.0
Lac1g2672 . 125 370 Single Myb Histone (SMH) Gene Family AT3G49850 52.2 4.8e-59 225.7
Lac12g2458 . 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 50.7 8.5e-69 258.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013733 1 1 1 0 1 0 2 0 0 0 0 0 1 1 1 2 0 2 1 0 0 0 1 1 1 0 1 4 2 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23113 PF00538 Linker_histone 1.10E-10 CL0123 Lac TF