Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2458 ATGGGAAACCAGAAGCAGAAGTGGACGCAGGAGGAAGAGGATGCACTATTGGCCGGCGTACAGAAGCACGGTCCCGGAAAGTGGAAGAACATTCTCAAAGATCCTGAATTCGCTCCGTTTCTCACTCATCGCTCGAACATTGACCTCAAGGACAAATGGCGTAATTTGAGTGTTAGCACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGGCTCCTAAAGCAAAAGCTATTGTTGCTCCTCCGCTTTCTAACAGCCAAAACTCTGCTCCTACTAGGTTTAATGCATCCGCTGATACTGCAGGGGATGATCCACCAAACAGCAGTACACAGGAAGGAAAAAATGTCCCAAGGTATCATACAATGATTTTTGAAGCCCTTTCAACCATAAAAGATTCAAATGGATGTGACATAGGCACAATTGTTAACTTTATTGAGCAAAGACATGAGGTGCCACAAAACTTTAGAAGGCAATTAAGCTCAAAGTTGAGGAGGCTTGTTTCACAAGGAAAGCTCGAAAAGGTTCAGAATTGCTACAAAGTAAAGAAAGACAATTCATTGGCAGTTAAAACTCCTACACCCAAACAAAAAGATGTCAGGCAACGGATATCACAATATACTACGGGAGGGTTGATGCCATCAGGGGAGACGGTGGAAGATGCAGCGAAAGCGGCTGCTTATAAAGTGGCTGATGCAGAGAACAAATCTTTCTTAGCTGCTGAAGCTGTCAAGGAGGCAGAGAGAATTGCAAAGATGGCTGAAGATACAGATACTGTGCTACAGATCATAAAAGAGATGTATGAAAAATGTTCTCGTGGTGAAATTGTTCTCTTGGCTTAG 837 43.49 MGNQKQKWTQEEEDALLAGVQKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTASQGSKEKSRAPKAKAIVAPPLSNSQNSAPTRFNASADTAGDDPPNSSTQEGKNVPRYHTMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRISQYTTGGLMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDTVLQIIKEMYEKCSRGEIVLLA 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41648611 41652260 + Lag0016830.1 Lac12g2458 591055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2458 278 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Lac12g2458 278 Gene3D - 111 199 IPR036388 -
Lac12g2458 278 FunFam Telomere repeat-binding factor 1 8 87 - -
Lac12g2458 278 FunFam Telomere repeat-binding factor 1 2 58 - -
Lac12g2458 278 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lac12g2458 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Lac12g2458 278 SMART sant 4 59 IPR001005 -
Lac12g2458 278 Gene3D - 8 80 - -
Lac12g2458 278 CDD SANT_TRF 6 56 - -
Lac12g2458 278 Pfam linker histone H1 and H5 family 116 175 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lac12g2458 278 MobiDBLite consensus disorder prediction 58 116 - -
Lac12g2458 278 SMART h15plus2 112 177 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lac12g2458 278 MobiDBLite consensus disorder prediction 80 115 - -
Lac12g2458 278 MobiDBLite consensus disorder prediction 1 20 - -
Lac12g2458 278 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Lac12g2458 278 PANTHER SINGLE MYB HISTONE 4 1 275 IPR044597 GO:0003691(InterPro)
Lac12g2458 278 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 182 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Lac12g2458 278 SUPERFAMILY Winged helix DNA-binding domain 112 193 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0862 Lac-Chr11:9258767 Lac12g2458 Lac-Chr12:41648611 3.20E-18 dispersed
Lac12g2458 Lac-Chr12:41648611 Lac1g2672 Lac-Chr1:47956081 1.40E-28 dispersed
Lac12g2458 Lac-Chr12:41648611 Lac5g2619 Lac-Chr5:44693250 4.80E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23113 PF00538 Linker_histone 1.10E-10 CL0123 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2458 K09422 - csv:101202785 488.419