Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2459 ATGGCTGGTTTGGCTCCTGAAGGATCTCAATTTGATGCACGTCAGTATGACACTAAAATGAATGAGTTGCTTTCAGCTGATGGACAGGATTTCTTCACCTCATACGATGAAGTTTATGATAGTTTTGATTCTATGGGTTTGCAAGAAAATCTTCTCAGAGGCATCTATGCGTATGGTTTCGAGAAGCCATCTGCAATTCAGCAAAGGGGAATTGTTCCTTTCTGCAAGGGGCTTGATGTGATCCAACAAGCTCAGTCTGGAACAGGGAAGACTGCAACTTTCTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTCGTGCAATGTCAGGCTTTGGTCTTAGCACCCACTAGGGAACTTGCACAACAGATTGAGAAGGTTATGCGAGCCCTTGGTGATTATCTTGGTGTGAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTACGTGAGGACCAACGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTGTTTGATATGTTGCGTAGACAGTCACTTCGTCCCGACTGCATTCGTATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCTCGTGGATTCAAAGATCAGATCTATGACATTTTCCAGCTGCTACCATCCAAGATTCAGGTTGGAGTCTTCTCTGCTACAATGCCACCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAATAAGCCTGTAAGAATTCTTGTTAAGCGTGACGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTCAATGTTGACAAGGAAGACTGGAAGCTCGAAACTCTCTGTGATCTTTATGAGACTCTGGCCATCACCCAGAGTGTCATCTTCGTCAATACTCGACGTAAAGTGGATTGGCTCACTGACAAGATGCGAAGCCGTGACCACACGGTATCTGCCACCCACGGAGACATGGACCAGAACACACGAGACATTATTATGCGTGAGTTCCGTTCTGGCTCTTCTAGAGTCCTCATTACCACAGATCTATTGGCCCGTGGTATCGATGTCCAGCAGGTTTCTCTCGTTATTAACTATGATCTTCCGACACAACCGGAGAATTACCTTCATCGTATAGGAAGAAGTGGACGATTTGGAAGAAAGGGTGTTGCCATCAACTTTGTAACTAACGAAGATGAAAGAATGCTATTTGACATTCAGAAGTTTTACAATGTGGTAATTGAAGAGCTGCCAGCTAATGTTGCTGATCTCCTGTGA 1242 44.93 MAGLAPEGSQFDARQYDTKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNEDERMLFDIQKFYNVVIEELPANVADLL 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41655823 41657902 + Lag0016831.1 Lac12g2459 591056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2459 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724(InterPro)
Lac12g2459 413 Pfam DEAD/DEAH box helicase 65 227 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Lac12g2459 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Lac12g2459 413 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 399 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Lac12g2459 413 SMART helicmild6 293 374 IPR001650 -
Lac12g2459 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Lac12g2459 413 SMART ultradead3 59 256 IPR014001 -
Lac12g2459 413 Gene3D - 249 413 IPR027417 -
Lac12g2459 413 FunFam Eukaryotic initiation factor 4A-III 248 413 - -
Lac12g2459 413 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
Lac12g2459 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Lac12g2459 413 CDD SF2_C_DEAD 253 383 - -
Lac12g2459 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Lac12g2459 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Lac12g2459 413 CDD DEADc_EIF4A 45 242 - -
Lac12g2459 413 Gene3D - 30 248 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2459 Lac-Chr12:41655823 Lac6g0175 Lac-Chr6:1412049 8.00E-230 dispersed
Lac10g2941 Lac-Chr10:44020294 Lac12g2459 Lac-Chr12:41655823 3.00E-53 transposed
Lac7g0249 Lac-Chr7:1954560 Lac12g2459 Lac-Chr12:41655823 4.60E-73 transposed
Lac6g0640 Lac-Chr6:5427233 Lac12g2459 Lac-Chr12:41655823 1.70E-62 transposed
Lac12g2459 Lac-Chr12:41655823 Lac4g2996 Lac-Chr4:48187090 7.00E-234 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2459 K03257 - csv:101223055 811.986