Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2483 ATGAGTAATTGGCTGGGTTTTTCTCTCACTCCCCACCTCAGACTCCACGACGCCGCCGTCGCCGCCGACGATCAACCCAACCCCGGCAACTTCCCGCCCCTCATGCCTCTGCGCTCCGACGGATCTCTCTGTATCGCCGCCGCCCACGTCCTGGTTGGGGCCGACGCCGACGGCCACTTCCAGTTCGCAAAACGAGTGTGGCTTTCAATCTCTCTCGCTTGGGATGAGCCCCAACTCCCAAAACGACATCGCTTCGCTCTCCTCCTCCTCGTCGCCGCCGCCCCCCATGCGGCGGCGGATTCCCGGAAGCGCCCGGTCCCGGTGGGGAAGGCTCCGATCAAAGAACCTGTTCCGAGAAAGTCCATCGATACCTTCGGACAAAGAACCTCTCAGTTCCGCGGTGTCACAAGGCATAGATGGACGGGAAGATATGAGGCACATTTATGGGACAACAGCTGTAGAAAAGAAGGCCAAACAAGGAAGGGAAGGCAAGGTGGTTATGATAAGGAAGAAAAAGCGGCACGAGCGTACGATTTAGCTGCGCTAAAGTATTGGGGACCGACGACGCATATAAATTTTCCCTTGAGCACGTACGAAAATGAGCTGGAAGAGATGAAGAACATGACTCGACAGGAGTTCGTAGCCAACTTGAGAAGAAAAAGCAGTGGATTCTCAAGAGGAGCTTCAATGTACAGAGGAGTAACAAGACATCATCAACATGGAAGGTGGCAAGCTAGAATTGGAAGGGTTGCAGGAAATAAAGATTTGTACCTCGGCACATTTAGCACACAAGAGGAGGCGGCGGAGGCCTACGACATAGCGGCCATCAAGTTTAGGGGGACGAGTGCGGTGACGAATTTCGACATTAGTAGGTATGACGTGAAGAGGATTTGCTCTAGTTCAACTCTGATTGCTGGTGACCTTGCAAAGCGTTCGCCATTGAAAGATGGTACTCCCACGACGACGACCGAGGACTATACTGCCTGTGCTTCGCCATCGTCCTCGCAGCCTCTCTTGGCCATCACTGGCGACGGTGGTGCTGAGAGCCACCACGAGTTGGGTGACGTGGTTTGGTGTGACAATGTTGCTGCTGACGACGATAATCAACAACAACACGAGAATGCAGCGAAGATGAACAATGACTTGAGCTTGATGGGTTCGAGCAATAGGAGGGACTCGTCGAAGTGTTCTACGATGCAGAACAACGGGGAGTTCGGGATTGGAGCCGGGGTCGGGGGAGGCGAGTATTCACAAGGCTATTTCTCAATGCAAGAGGCAAAATATGAGGATGGGAATGATGAGGGGGAGGAAAATAGGGAGCTGGGAAATAGTAGTGTGACATTAGCTCATCATCATGTTCCAATGTTTGCTTTATGGAATGAATGA 1386 52.74 MSNWLGFSLTPHLRLHDAAVAADDQPNPGNFPPLMPLRSDGSLCIAAAHVLVGADADGHFQFAKRVWLSISLAWDEPQLPKRHRFALLLLVAAAPHAAADSRKRPVPVGKAPIKEPVPRKSIDTFGQRTSQFRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYENELEEMKNMTRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPLKDGTPTTTTEDYTACASPSSSQPLLAITGDGGAESHHELGDVVWCDNVAADDDNQQQHENAAKMNNDLSLMGSSNRRDSSKCSTMQNNGEFGIGAGVGGGEYSQGYFSMQEAKYEDGNDEGEENRELGNSSVTLAHHHVPMFALWNE 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41881581 41884752 + Lag0016855.1 Lac12g2483 591080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2483 461 MobiDBLite consensus disorder prediction 315 340 - -
Lac12g2483 461 CDD AP2 130 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g2483 461 ProSiteProfiles AP2/ERF domain profile. 131 194 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g2483 461 PRINTS Ethylene responsive element binding protein signature 132 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g2483 461 PRINTS Ethylene responsive element binding protein signature 270 290 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g2483 461 SUPERFAMILY DNA-binding domain 229 290 IPR016177 GO:0003677(InterPro)
Lac12g2483 461 Gene3D AP2/ERF domain 130 196 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g2483 461 Gene3D AP2/ERF domain 230 290 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g2483 461 Pfam AP2 domain 131 186 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g2483 461 Pfam AP2 domain 231 280 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g2483 461 SUPERFAMILY DNA-binding domain 130 196 IPR016177 GO:0003677(InterPro)
Lac12g2483 461 CDD AP2 229 290 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g2483 461 ProSiteProfiles AP2/ERF domain profile. 230 288 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g2483 461 SMART rav1_2 230 294 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g2483 461 SMART rav1_2 131 200 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g2483 461 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 99 364 - -
Lac12g2483 461 MobiDBLite consensus disorder prediction 310 346 - -
Lac12g2483 461 FunFam AP2-like ethylene-responsive transcription factor 229 290 - -
Lac12g2483 461 FunFam AP2-like ethylene-responsive transcription factor ANT 130 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2483 Lac-Chr12:41881581 Lac1g2705 Lac-Chr1:48271738 1.50E-99 dispersed
Lac12g2483 Lac-Chr12:41881581 Lac6g0226 Lac-Chr6:1805209 2.40E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23116 PF00847 AP2 1.50E-09 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2483 K09285 - csv:101205762 584.719