Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2484 ATGAATTCAAGTCCAAAGACCTGCACCTCTCCTTTCACAGCAACTCAATGGCAAGAACTGGAACACCAAGCTCTGATCTTCAAATACATGGTTTCAGGAGTACCAATCCCTCCTGATCTAATCTTCTCTGTGAAAAGAAGCTTGGATTCCTCCATTTCTGCAAGACTCTTCCCTCACCAACCCATTGGGTGGGGGTGCTTTGAGATGGGTTTTGGCAGAAAAGCAGACCCTGAGCCAGGAAGGTGCAGAAGAACAGATGGGAAAAAATGGAGATGCTCAAAAGAAGCTTATCCAGACTCCAAATACTGTGAGAGGCACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAATCTCTTCAACACCATCAACTCAAACACCAACGCCTTTAATCCTCACTTCTACCCGGAGCCTCTCTTCTTCCACTCCAACCTCCTCTTCATATTCTCTCTCTACACTTTCTTCTTCATCTTCTTCACTGACCTGTGAAACTCAATCTTATCACCAAGCTGCTGCTGCTGCTGCTGCTGCTGCTTATCATGAATCCTCCATTCATCCATTTCTGTATCCTCAATCTTCCTCCTCCAGACCTCCATGTTCTGATTTCTCTCCAAACAGTACAAACCCTCAGCTCTTTTTGTACTCAGGGACTCATTCTCTGGCTGATAAAGAGTACAGGGATATTAATGGTCCAAGAGAGGGTGTGGGCGTGCAGGCGTTCTTCCCATCAGTTGCAGAGTCTGCAAGAAGCATAGGTGAGGTTTATAGTCAGCCATTAGGAATGGATTCTTATAAAGGATGCTCCCAATCTGTTTCCCAAAGCCACCAAATTTACAGTTCTAAACACGCAAGGCAACAACAAGAGCAACACTGCTTTGTTTTGGGCACAGACTTCAATAAATCATCAAGATCAGCTAAAACAGAGGAAGAAGAAGAAGATGCAGAAACCCAGAAGCCACTACTCCACTTCTTTGAGGATTGCCCACCAAAAAACTCAGATTCCTGGCTTGATTTAGCCTCAAATTCAAGTATACATAGTGGAAATTTTATTGGGTTATGA 1065 44.41 MNSSPKTCTSPFTATQWQELEHQALIFKYMVSGVPIPPDLIFSVKRSLDSSISARLFPHQPIGWGCFEMGFGRKADPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEISSTPSTQTPTPLILTSTRSLSSSTPTSSSYSLSTLSSSSSSLTCETQSYHQAAAAAAAAAYHESSIHPFLYPQSSSSRPPCSDFSPNSTNPQLFLYSGTHSLADKEYRDINGPREGVGVQAFFPSVAESARSIGEVYSQPLGMDSYKGCSQSVSQSHQIYSSKHARQQQEQHCFVLGTDFNKSSRSAKTEEEEEDAETQKPLLHFFEDCPPKNSDSWLDLASNSSIHSGNFIGL 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41899517 41900852 - Lag0016856.1 Lac12g2484 591081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2484 354 Pfam QLQ 11 44 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac12g2484 354 MobiDBLite consensus disorder prediction 103 148 - -
Lac12g2484 354 SMART QLQ_2 10 46 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac12g2484 354 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac12g2484 354 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Lac12g2484 354 MobiDBLite consensus disorder prediction 117 148 - -
Lac12g2484 354 PANTHER GROWTH-REGULATING FACTOR 5 7 339 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Lac12g2484 354 Pfam WRC 77 119 IPR014977 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2484 Lac-Chr12:41899517 Lac3g1074 Lac-Chr3:8806355 2.20E-47 dispersed
Lac12g2484 Lac-Chr12:41899517 Lac6g3101 Lac-Chr6:48463371 1.90E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23117 PF08879 WRC 1.90E-21 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2484 - - - 0.0