Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac12g2484 | ATGAATTCAAGTCCAAAGACCTGCACCTCTCCTTTCACAGCAACTCAATGGCAAGAACTGGAACACCAAGCTCTGATCTTCAAATACATGGTTTCAGGAGTACCAATCCCTCCTGATCTAATCTTCTCTGTGAAAAGAAGCTTGGATTCCTCCATTTCTGCAAGACTCTTCCCTCACCAACCCATTGGGTGGGGGTGCTTTGAGATGGGTTTTGGCAGAAAAGCAGACCCTGAGCCAGGAAGGTGCAGAAGAACAGATGGGAAAAAATGGAGATGCTCAAAAGAAGCTTATCCAGACTCCAAATACTGTGAGAGGCACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAATCTCTTCAACACCATCAACTCAAACACCAACGCCTTTAATCCTCACTTCTACCCGGAGCCTCTCTTCTTCCACTCCAACCTCCTCTTCATATTCTCTCTCTACACTTTCTTCTTCATCTTCTTCACTGACCTGTGAAACTCAATCTTATCACCAAGCTGCTGCTGCTGCTGCTGCTGCTGCTTATCATGAATCCTCCATTCATCCATTTCTGTATCCTCAATCTTCCTCCTCCAGACCTCCATGTTCTGATTTCTCTCCAAACAGTACAAACCCTCAGCTCTTTTTGTACTCAGGGACTCATTCTCTGGCTGATAAAGAGTACAGGGATATTAATGGTCCAAGAGAGGGTGTGGGCGTGCAGGCGTTCTTCCCATCAGTTGCAGAGTCTGCAAGAAGCATAGGTGAGGTTTATAGTCAGCCATTAGGAATGGATTCTTATAAAGGATGCTCCCAATCTGTTTCCCAAAGCCACCAAATTTACAGTTCTAAACACGCAAGGCAACAACAAGAGCAACACTGCTTTGTTTTGGGCACAGACTTCAATAAATCATCAAGATCAGCTAAAACAGAGGAAGAAGAAGAAGATGCAGAAACCCAGAAGCCACTACTCCACTTCTTTGAGGATTGCCCACCAAAAAACTCAGATTCCTGGCTTGATTTAGCCTCAAATTCAAGTATACATAGTGGAAATTTTATTGGGTTATGA | 1065 | 44.41 | MNSSPKTCTSPFTATQWQELEHQALIFKYMVSGVPIPPDLIFSVKRSLDSSISARLFPHQPIGWGCFEMGFGRKADPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEISSTPSTQTPTPLILTSTRSLSSSTPTSSSYSLSTLSSSSSSLTCETQSYHQAAAAAAAAAYHESSIHPFLYPQSSSSRPPCSDFSPNSTNPQLFLYSGTHSLADKEYRDINGPREGVGVQAFFPSVAESARSIGEVYSQPLGMDSYKGCSQSVSQSHQIYSSKHARQQQEQHCFVLGTDFNKSSRSAKTEEEEEDAETQKPLLHFFEDCPPKNSDSWLDLASNSSIHSGNFIGL | 354 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 41899517 | 41900852 | - | Lag0016856.1 | Lac12g2484 | 591081 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac12g2484 | 354 | Pfam | QLQ | 11 | 44 | IPR014978 | GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Lac12g2484 | 354 | MobiDBLite | consensus disorder prediction | 103 | 148 | - | - | |
Lac12g2484 | 354 | SMART | QLQ_2 | 10 | 46 | IPR014978 | GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Lac12g2484 | 354 | ProSiteProfiles | QLQ domain profile. | 11 | 46 | IPR014978 | GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Lac12g2484 | 354 | ProSiteProfiles | WRC domain profile. | 76 | 120 | IPR014977 | - | |
Lac12g2484 | 354 | MobiDBLite | consensus disorder prediction | 117 | 148 | - | - | |
Lac12g2484 | 354 | PANTHER | GROWTH-REGULATING FACTOR 5 | 7 | 339 | IPR031137 | GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro) | |
Lac12g2484 | 354 | Pfam | WRC | 77 | 119 | IPR014977 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g2484 | Lac-Chr12:41899517 | Lac3g1074 | Lac-Chr3:8806355 | 2.20E-47 | dispersed | |
Lac12g2484 | Lac-Chr12:41899517 | Lac6g3101 | Lac-Chr6:48463371 | 1.90E-54 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23117 | PF08879 | WRC | 1.90E-21 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac12g2484 | - | - | - | 0.0 |