Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2494 ATGTCTGGCACCGTGGGTTTGGTCGTTATGCAGCTTGTTTCCCGCCATTTCCTGCTACTGGTATGCTTCTCTTTCCCCATTTATGTCGTTTCTGGTTTAAACTCTGATGGGTTGGCTTTATTGTCACTCCAAAGCCGCTGGACTACCCACACTCCTTTTGTCCCTCTTTGGAATGCCTCTGATTCCACTCCCTGTTCTTGGTTTGGGATTGCTTGTGATAACAACCTTCGTGTCATCACCATGAATCTCTCTTTTCATGGGATTTCGGGTCAGCTAGGACCCGAAATCTCGCGTTTGACACAGTTGCGTACCATTGATTTGCTCACGAACAATTTTTATGGTGCAATTCCTAATGGGATAAGTAACTGTAGCCATTTGGAGTACTTGGATCTCTCCTTTAACCAATTTGGTGGAGAAATTCCTCAGTCATTAATGCTTCTTAGGAACTTGACGTCTTTGAACTTCCATGGCAATGTTCTAACAGGTGTGATACCCAACTCGTTGTTTCAAATTGTGAGTTTGCAGTATGTGTATCTTAGCGAAAACAATCTCAATGGTTCTATTCCTTCAAATGTGGGGAATTTGAGGCAGGTCTTGCATTTGTATCTGTATGGAAATGAGTTGTCTGGAACCATACCTTCTTCCATAGGGAATTGTAGCCAATTGATGGAGCTTTATTTGGATCAGAACCAGTTGGTGGGAGTGTTGCCCAATAGTCTTAACAATCTTGATAATCTTGTGAATTTGGGTGTCAGCCGCAACAATCTTGAGGGTCCAATTCCCTTGGGTTCAGGGGGTTGCCAGAGTTTAGAATTTATAGATTTGTCATTCAATGGTTATACTGGAGGTATACCTGCCGGGATGGGCAACTGTAGTCACCTAAGAACCATACTCCTTGTGAATTCCAGTCTAACAGGACATATTCCTTCCACCTTTGGCCAGCTAAGTAATCTTATGGCTATTGATCTCTCTAGAAATCAACTGTCTGGGAGTATACCATCTGAACTCGGGGCTTGCAAATCCTTGAAAAAACTCGAGTTGTACGACAACCAACTCGAGGGGCATATTCCTAGTGAATTGGGTTTGCTAAGTGGATTAGAGACCCTTCGATTGTTTTCGAACCGTTTGACTGGTGAGATTCCTATCAACATCTGGAAGATTGCAAGTCTCCAGCATATTTCTGTGTACAACAACAACCTTTTAGGGGAACTGCCCTTGATAATAACTGAGCTCAAGCACCTCAAAAACATTTCTGTGTTCAACAACCATTTTTCTGGAGTCATACCTCAAAGTTTGGGACTCAACAGCAGCTTAGAGCAAGTGGAGTTCACTAATAACCAGTTCACTGGTCAAATTCCACCAAATCTATGCTCTGGAAAGACATTAAGGTTGTTAAATTTAGGTTTGAATCGATTTCAAGGTAGCGTACCTTCAGATATTGGAACCTGTGTGACTCTTCAGAGGTTGATTTTGAGAAAGAATAATCTAACAGGGGTTTTGCCAGAATTTATGAGAAATCACGGCCTTCGTTTCATGGATGCCAGTGAAAATAACCTGAATGGAACAATTCCATCAAGTTTGGGAAATTGCATCAATCTCACCTCAATTAATTTATCAAGAAACAAGATTACAGGTCTTATACCTAATGAGTTGGGAAATCTTGTGAATCTTCAAAGTTTGAGTTTGTCTCACAACTACTTGGAAGGACATTTGCCATCTTCCCTATCACATTTTACTAAACTGGATAAGTTTGACGTAGGATTCAATTTATTGAATGGTTCTGTACCTCATAGTTTGGCTAGCTGGAAAGTTATATCCACGTTGATATTAAAAGAGAATCGATTCACGGGAGGCATCCCGAATGTATTATCAGAACTTGAAAGCCTTTCACTACTAGATCTTGGTGGCAATTTGTTTGGAGGGGAAATCCCTTCATCTATTGGAGCTTTGAAGAATCTGTTTTATTCCTTGAATCTCAGTAACAATGGGTTAACTGGCCAACTACCTCCTGAGTTACGGAGTCTGGCCATGCTAGAGAAGTTAGATATATCTCACAATAATTTGAATGGAAGTTTAAGAGTTCTTGACGAACTCAGTTCATCGATAGTTGAGCTTAACATTTCAGATAATTTCTTCACAGGTCCTGTGCCCCAAGCATTAATGAAGTTTCTGAGTTCTAGTCCGTTATCGTTCTTAGGCAACCCTGGGCTGTGCATCAGCTGTGATAAACTAGATGTCTTAACTTGCAACAGAAGTAGCAGTATCAAACCTTGTGCTAGTCTTTCAAGTTCTCGTGATAGCTCTCGTCTTAGCAATATACAAATTGCAATGATAGCTCTCGGATCTTCACTTTTTATTGTTTGTGTGCTTCTTGGGTTGGTTTATAAGTTTGTTTATAGCAGAAGAAACAAGAAAAGAATTGAGACGTCTGCTCAAGTAGGAACAACTTCCTTGCTCATTGACAGGGTAATAAAGGCTACTAATAATCTAGATGAACGTTTTGTCATTGGGAGAGGGGCACATGGAGTTGTTTATAAGGCTTCCCTTGATTCAGAAAGAACTTTTGCTGTAAAGAAGCTTACATTTGAAGGATGTAAAGGGGGAAGTCAGAGTATGGTTAGAGAAATTCAAACTGTCGGTATCATCAAGCACCGGAACCTGATCGCTTTGGAAGATTTTTGGTTGGGAAAGGACCATGGTCTATTACTTTACAGATACCAGCCTAATGGAAGCCTTTATGATGTATTGCATGAGATGAATCCAGCTCCAACTCTAACATGGGAAGTCCGTCATAATATGGCCATTGGTATTGCACATGGATTGGCATATCTCCATCACGATTGTGTTCCTCCTATAATACATCGAGACATCAAACCGCAGAATATACTTCTAGATTCGGAGATGGAACCTCGTATTGCTGATTTTGGTCTTGCAAAGCTGCTGGATCAAACTTCTGCGCCAACAGCTTCATCTTCGTTTGCAGGCACAATTGGCTACATTGCTCCAGAGAATGCATTTTCAGCAGCAAAGAGCAAAGCTTCAGACGTGTACAGTTATGGGGTGGTTTTACTCGAGCTGATAACGAGAAAGAAGCCATCCGATCTATCGTTTACGGAGGTAGGGAGTATCATGGCTTGGGTTCGATCGGTTTGGAACGAGACACAAGAAATAGATAGTATTGTTGATCCAAGGCTTGTGGAAGAACTTGTAGATTCTGATGGGATGGAGGAGATTAAGAAGGTGCTTGTGGTGGCTTTGAGATGCACCGAAAAGGAACCTAACAAGAGACCTACAATGAGAGATGTTGTCAGCCACTTGATTGATTCAAAGATGAGTCATTAA 3342 41.23 MSGTVGLVVMQLVSRHFLLLVCFSFPIYVVSGLNSDGLALLSLQSRWTTHTPFVPLWNASDSTPCSWFGIACDNNLRVITMNLSFHGISGQLGPEISRLTQLRTIDLLTNNFYGAIPNGISNCSHLEYLDLSFNQFGGEIPQSLMLLRNLTSLNFHGNVLTGVIPNSLFQIVSLQYVYLSENNLNGSIPSNVGNLRQVLHLYLYGNELSGTIPSSIGNCSQLMELYLDQNQLVGVLPNSLNNLDNLVNLGVSRNNLEGPIPLGSGGCQSLEFIDLSFNGYTGGIPAGMGNCSHLRTILLVNSSLTGHIPSTFGQLSNLMAIDLSRNQLSGSIPSELGACKSLKKLELYDNQLEGHIPSELGLLSGLETLRLFSNRLTGEIPINIWKIASLQHISVYNNNLLGELPLIITELKHLKNISVFNNHFSGVIPQSLGLNSSLEQVEFTNNQFTGQIPPNLCSGKTLRLLNLGLNRFQGSVPSDIGTCVTLQRLILRKNNLTGVLPEFMRNHGLRFMDASENNLNGTIPSSLGNCINLTSINLSRNKITGLIPNELGNLVNLQSLSLSHNYLEGHLPSSLSHFTKLDKFDVGFNLLNGSVPHSLASWKVISTLILKENRFTGGIPNVLSELESLSLLDLGGNLFGGEIPSSIGALKNLFYSLNLSNNGLTGQLPPELRSLAMLEKLDISHNNLNGSLRVLDELSSSIVELNISDNFFTGPVPQALMKFLSSSPLSFLGNPGLCISCDKLDVLTCNRSSSIKPCASLSSSRDSSRLSNIQIAMIALGSSLFIVCVLLGLVYKFVYSRRNKKRIETSAQVGTTSLLIDRVIKATNNLDERFVIGRGAHGVVYKASLDSERTFAVKKLTFEGCKGGSQSMVREIQTVGIIKHRNLIALEDFWLGKDHGLLLYRYQPNGSLYDVLHEMNPAPTLTWEVRHNMAIGIAHGLAYLHHDCVPPIIHRDIKPQNILLDSEMEPRIADFGLAKLLDQTSAPTASSSFAGTIGYIAPENAFSAAKSKASDVYSYGVVLLELITRKKPSDLSFTEVGSIMAWVRSVWNETQEIDSIVDPRLVEELVDSDGMEEIKKVLVVALRCTEKEPNKRPTMRDVVSHLIDSKMSH 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41951774 41955213 - Lag0016866.1 Lac12g2494 591091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2494 1113 Pfam Leucine Rich Repeat 149 169 IPR001611 GO:0005515(InterPro)
Lac12g2494 1113 Pfam Leucine Rich Repeat 628 650 IPR001611 GO:0005515(InterPro)
Lac12g2494 1113 Pfam Leucine Rich Repeat 173 195 IPR001611 GO:0005515(InterPro)
Lac12g2494 1113 Pfam Leucine Rich Repeat 656 675 IPR001611 GO:0005515(InterPro)
Lac12g2494 1113 Pfam Leucine Rich Repeat 200 219 IPR001611 GO:0005515(InterPro)
Lac12g2494 1113 Pfam Leucine Rich Repeat 222 243 IPR001611 GO:0005515(InterPro)
Lac12g2494 1113 SUPERFAMILY RNI-like 81 431 - -
Lac12g2494 1113 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 641 1106 IPR050647 -
Lac12g2494 1113 Gene3D Transferase(Phosphotransferase) domain 1 908 1113 - -
Lac12g2494 1113 SUPERFAMILY Protein kinase-like (PK-like) 810 1106 IPR011009 -
Lac12g2494 1113 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Lac12g2494 1113 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 419 748 - -
Lac12g2494 1113 ProSiteProfiles Protein kinase domain profile. 830 1113 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2494 1113 SMART serkin_6 830 1107 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2494 1113 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 794 906 - -
Lac12g2494 1113 SMART LRR_typ_2 626 650 IPR003591 -
Lac12g2494 1113 SMART LRR_typ_2 675 698 IPR003591 -
Lac12g2494 1113 SMART LRR_typ_2 99 123 IPR003591 -
Lac12g2494 1113 SMART LRR_typ_2 363 387 IPR003591 -
Lac12g2494 1113 SMART LRR_typ_2 195 219 IPR003591 -
Lac12g2494 1113 SMART LRR_typ_2 315 339 IPR003591 -
Lac12g2494 1113 SMART LRR_typ_2 147 171 IPR003591 -
Lac12g2494 1113 SMART LRR_typ_2 220 242 IPR003591 -
Lac12g2494 1113 SMART LRR_typ_2 530 553 IPR003591 -
Lac12g2494 1113 SMART LRR_typ_2 554 578 IPR003591 -
Lac12g2494 1113 Pfam Protein kinase domain 835 1105 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2494 1113 Gene3D Ribonuclease Inhibitor 33 191 IPR032675 -
Lac12g2494 1113 Gene3D Ribonuclease Inhibitor 364 744 IPR032675 -
Lac12g2494 1113 Gene3D Ribonuclease Inhibitor 196 363 IPR032675 -
Lac12g2494 1113 Pfam Leucine rich repeat 292 352 IPR001611 GO:0005515(InterPro)
Lac12g2494 1113 Pfam Leucine rich repeat 515 567 IPR001611 GO:0005515(InterPro)
Lac12g2494 1113 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 311 407 - -
Lac12g2494 1113 ProSitePatterns Serine/Threonine protein kinases active-site signature. 952 964 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g2494 1113 SUPERFAMILY L domain-like 409 752 - -
Lac12g2494 1113 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 189 284 - -
Lac12g2494 1113 Gene3D Phosphorylase Kinase; domain 1 794 906 - -
Lac12g2494 1113 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 33 187 - -
Lac12g2494 1113 ProSitePatterns Protein kinases ATP-binding region signature. 836 859 IPR017441 GO:0005524(InterPro)
Lac12g2494 1113 FunFam Serine/threonine-protein kinase-like protein CCR4 907 1113 - -
Lac12g2494 1113 Pfam Leucine Rich repeat 122 139 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2494 Lac-Chr12:41951774 Lac2g1122 Lac-Chr2:8921133 3.10E-63 dispersed
Lac5g1609 Lac-Chr5:32703049 Lac12g2494 Lac-Chr12:41951774 3.40E-33 dispersed
Lac12g2494 Lac-Chr12:41951774 Lac12g2496 Lac-Chr12:41967213 1.60E-203 proximal
Lac12g2494 Lac-Chr12:41951774 Lac12g2499 Lac-Chr12:41993338 1.30E-16 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85830 PF00069 Pkinase 1.90E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2494 K28089 - csv:101204561 1712.97