Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2496 ATGCAGCTTGTTTTCCGCCATTTCCTGCTACTGGTATGCTTCTCTCTCCCCATTTATGTCGTTTCTGGTTTAACCTCAGATGGGTTGGCTTTATTGTCACTCCAAAGCCGCTGGACTATCCAGACCCCTTTTGTCCCTGTTTGGAATGCCTCTGATTCCACTCCCTGTTCTTGGGCCGGGATTGAATGTGGTAAAAACCTTCGTGTCATCACCTTGAATCTCTCTTTTTATGGCGTTTCGGGTCAGCTTGGCCCCGAAATTGCGCGCTTGACCCAGTTGCGCACTGTTGATTTGTTCACGAACGATTTTTCTGGTGCAATTCCTTATGGGATAGGTAACTGTAGCCATTTGGAGTTCTTGGATCTCTCCCTTAATCAATTTAGTGGAGAAATTCCTCAGTCGTTAACGAACCTTAGGAACTTGACGTCTTTGAACTTCCATGGCAATGTTCTGACAGGTTCGATACCCGATTCCTTATTCCAAATTCTGAATTTGCAGTATGTGTATCTTAGCGAAAACAATCTCAATGGTTCTATTCCTTCAAATGTGGGGAATTTGAGGCAGGTCTTTCATTTGTATCTGTATGGAAATGAGTTGTCTGGTTCCATACCTTCTTCCATAGGGAATTGTAGCCAATTGATGGATCTTTATTTGGATCAGAACCAGTTGGTGGGAGTGTTGCCCAATAGTCTTAACAATCTTCATAATCTTGTGAATTTGGGTGTAAGCCACAACAATCTTGAGGGTCCAATTCCTCTGGGTTCAGGCAGTTGCCAGAGCCTAGAATATATAGATTTGTCATTCAATAGTTATACAGGAGGTATACCTGCTGGGCTGGGCAACTGTAGTGGCCTAAGAACTTTACTCATTGTAAATTCCAGTTTAACAGGTCATATTCCTTCCTCCTTCGGTCAGCTAAGTAATCTTACGACTGTTGATCTCTCTAGAAATCAGCTGTCTGGGAATATACCACCCGAATTTGGGGATTGTAAATCCTTGAAAGAACTGGATTTGTATGTCAACCAACTCGAGGGACGTATCCCTAGTGAATTGGGTTTGCTAAATGGATTAGAAACCCTTCAACTGTTTACGAACCATCTGACTGGTGAGATTCCTATCAGCATCTGGAAGATTGCAAGTCTCCAGCATATTCTTGTGTACAACAACAACCTTTCTGGGGAACTGCCCTTGATAATAACTGAGCTCAAGCACCTCAAAAACATTTCTGTGTTCAATAACCAGTTTTCCGGAGTCATACCTCAAAGTTTGGGACTCAACAGTAGCTTAGTGCAAGTGGAGTTCACTAATAACCAGTTCTCTGGTCAAATTCCACCTAATCTCTGCTCTGGAAAGACATTAAGGGTGTTAAATTTAGGTTTGAATCAATTTCAAGGTAGCGTACCTTCAGACATTGGAACCTGTGTGACTCTTCAGAGGTTGATTTTGAGAAAGAATAATTTAACAGGGGTTTTGCCAGAATTTATGAGAAATCACGGCCTTCGGTTCGTGGATGCCAGTGAAAATAACCTGAATGGAACAATTCCCTCAAGTTTGGGAAATTGCATCAATCTTACCTCAATTAATCTGTCAAGCAACAAACTTACAGGTCTTATACCTAGTGAGTTGGGAAATCTTGTGAATCTTCAAAGTTTGATCTTGTCTCATAATTTCTTGGAAGGACCTTTGCCATCTTCCCTGTCAAATTGTAACAAAATGGATGAATTTGATGTAGGATTCAATTTATTGAATGGTTCTATACCTCATAGTTTGGTAAGCTGGAAGGTTATATCCACGTTGATATTAAAAGAGAATCGATTTACTGGAGGCATCTCGAATGTACTATCAGAACTTGAAAGCCTTTCATTGCTAGATCTTGGTGGCAATTTTTTTGGAGGTGAAATCCCTTCATCTATTGGAGCTTTGAAGAATCTGTTTTACTTCTTGAATCTCAGTAACAATGGGTTAACTGGTCAACTACCTTTTGAGCTAGCAAGTCTTGTCAAGCTACAGGAGTTAGATATATCTCACAATAATTTGACTGGAAGTTTAAGCGTTCTTGGGGAGCTAAGTTCATCGTTAGTTGAGCTTAACATTTCAGATAATTTTTTCACGGGTCCTGTGCCACAGACATTAATGAAGTTACTGAATTCTCATCCCTCATCGTTCTTGGATAACCCTGGGCTGTGCATCAGCTGTGATGAACTAGATGGCTTAAGTTGCAATAGAAATAGCAGCATCAAACCTTGTGCTACTCATTCAAGCTCACGTGGTAGCCCTCGTCTTAGCAATGTACAGATTGCAATGATAGCTCTTGGATCTTCACTCTTTATTGTTCTTTTGCTTATTGGATTGGTTTATAAGTTTGTTTATAGCAGAAGAAAGAACCAAAACATCGAGACTGCTGCTCAAGTTGGAACAACTTCCTTGCTTGATAAGGTCATGGAGGCCACTGATAATCTAGATGAGCGTTTCATCATTGGGAGAGGAGCACATGGAGTTGTTTATAAGGCTACCCTGGATTCAAATAGAACTTTTGCAGTAAAGAAGCTTACATTTGTAGGACGTAAAGGGGGAAGCCAGAATATGGTTAAAGAAATTCGAACTGTTGGCAACATCAAGCACCGAAACTTGATTGCTTTGGAAGACTTTTGGTTGGGTGAAGACCATGGTCTATTGTTTTATAAATACCAGCCGAATGGGAGCCTTTATGATGTGTTGCATGAAACAAGTCCAGCTCCAGGTCTAGCATGGAAAGTCCGCTATAATATTGCCACTGGTATTGCTCATGGATTGGCGTATCTCCATTACGATTGTGATCCTCCTATAATACACCGAGACATCAAACCGCAGAATATACTTCTAGATTCAGAGATGGAACCTCATATCGCCGATTTTGGTCTTGCAAAGCTGTTGGATCAAACTTTTGGATCAACGACTTCATCTTCTTTTGCAGGCACAATTGGCTACATTGCACCAGAGAATGCATTTTCAGCTGCAAAGAGCAAAACTTCAGATGTGTACAGTTATGGGGTGGTTTTACTCGAGCTGATAACAGGAAAGAAGCCATCAGATCCATCGTTTATGGAGGTTGGGAATATCATGGCTTGGGTTCGGTCGATTTGGAATGAGACAGAAGAAATAGATAGAATTGTTGATCCAAGGCTTGTGGAAGAACTTGTATATACTGATCGTAGGGAGCAGATTAAGCAGGTGCTTTTAATAGCTTTGAGATGCACAGAGAAGGAGCCTAACAAGAGACCTACAATGCGAGGTGTAGTCAACCACTTAATTGATTCGAAGACTATTACATAA 3312 41.0 MQLVFRHFLLLVCFSLPIYVVSGLTSDGLALLSLQSRWTIQTPFVPVWNASDSTPCSWAGIECGKNLRVITLNLSFYGVSGQLGPEIARLTQLRTVDLFTNDFSGAIPYGIGNCSHLEFLDLSLNQFSGEIPQSLTNLRNLTSLNFHGNVLTGSIPDSLFQILNLQYVYLSENNLNGSIPSNVGNLRQVFHLYLYGNELSGSIPSSIGNCSQLMDLYLDQNQLVGVLPNSLNNLHNLVNLGVSHNNLEGPIPLGSGSCQSLEYIDLSFNSYTGGIPAGLGNCSGLRTLLIVNSSLTGHIPSSFGQLSNLTTVDLSRNQLSGNIPPEFGDCKSLKELDLYVNQLEGRIPSELGLLNGLETLQLFTNHLTGEIPISIWKIASLQHILVYNNNLSGELPLIITELKHLKNISVFNNQFSGVIPQSLGLNSSLVQVEFTNNQFSGQIPPNLCSGKTLRVLNLGLNQFQGSVPSDIGTCVTLQRLILRKNNLTGVLPEFMRNHGLRFVDASENNLNGTIPSSLGNCINLTSINLSSNKLTGLIPSELGNLVNLQSLILSHNFLEGPLPSSLSNCNKMDEFDVGFNLLNGSIPHSLVSWKVISTLILKENRFTGGISNVLSELESLSLLDLGGNFFGGEIPSSIGALKNLFYFLNLSNNGLTGQLPFELASLVKLQELDISHNNLTGSLSVLGELSSSLVELNISDNFFTGPVPQTLMKLLNSHPSSFLDNPGLCISCDELDGLSCNRNSSIKPCATHSSSRGSPRLSNVQIAMIALGSSLFIVLLLIGLVYKFVYSRRKNQNIETAAQVGTTSLLDKVMEATDNLDERFIIGRGAHGVVYKATLDSNRTFAVKKLTFVGRKGGSQNMVKEIRTVGNIKHRNLIALEDFWLGEDHGLLFYKYQPNGSLYDVLHETSPAPGLAWKVRYNIATGIAHGLAYLHYDCDPPIIHRDIKPQNILLDSEMEPHIADFGLAKLLDQTFGSTTSSSFAGTIGYIAPENAFSAAKSKTSDVYSYGVVLLELITGKKPSDPSFMEVGNIMAWVRSIWNETEEIDRIVDPRLVEELVYTDRREQIKQVLLIALRCTEKEPNKRPTMRGVVNHLIDSKTIT 1103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41967213 41970623 - Lag0016868.1 Lac12g2496 591093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2496 1103 SMART LRR_typ_2 234 258 IPR003591 -
Lac12g2496 1103 SMART LRR_typ_2 138 162 IPR003591 -
Lac12g2496 1103 SMART LRR_typ_2 186 210 IPR003591 -
Lac12g2496 1103 SMART LRR_typ_2 617 641 IPR003591 -
Lac12g2496 1103 SMART LRR_typ_2 545 569 IPR003591 -
Lac12g2496 1103 SMART LRR_typ_2 306 330 IPR003591 -
Lac12g2496 1103 SMART LRR_typ_2 666 689 IPR003591 -
Lac12g2496 1103 FunFam Serine/threonine-protein kinase-like protein CCR4 897 1103 - -
Lac12g2496 1103 PRINTS Leucine-rich repeat signature 524 537 - -
Lac12g2496 1103 PRINTS Leucine-rich repeat signature 666 679 - -
Lac12g2496 1103 ProSiteProfiles Leucine-rich repeat profile. 668 690 IPR001611 GO:0005515(InterPro)
Lac12g2496 1103 Gene3D Transferase(Phosphotransferase) domain 1 898 1102 - -
Lac12g2496 1103 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 501 1096 IPR051564 GO:0016020(PANTHER)
Lac12g2496 1103 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 451 737 - -
Lac12g2496 1103 ProSitePatterns Protein kinases ATP-binding region signature. 826 849 IPR017441 GO:0005524(InterPro)
Lac12g2496 1103 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 786 896 - -
Lac12g2496 1103 ProSiteProfiles Protein kinase domain profile. 820 1098 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2496 1103 SMART serkin_6 820 1097 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2496 1103 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 23 180 - -
Lac12g2496 1103 Gene3D Ribonuclease Inhibitor 353 737 IPR032675 -
Lac12g2496 1103 Gene3D Ribonuclease Inhibitor 187 352 IPR032675 -
Lac12g2496 1103 Pfam Leucine Rich Repeat 260 282 IPR001611 GO:0005515(InterPro)
Lac12g2496 1103 Pfam Leucine Rich Repeat 668 683 IPR001611 GO:0005515(InterPro)
Lac12g2496 1103 Pfam Leucine Rich Repeat 647 666 IPR001611 GO:0005515(InterPro)
Lac12g2496 1103 Pfam Leucine Rich Repeat 523 545 IPR001611 GO:0005515(InterPro)
Lac12g2496 1103 Pfam Leucine Rich Repeat 692 714 IPR001611 GO:0005515(InterPro)
Lac12g2496 1103 Pfam Leucine Rich Repeat 140 160 IPR001611 GO:0005515(InterPro)
Lac12g2496 1103 Pfam Leucine Rich Repeat 619 641 IPR001611 GO:0005515(InterPro)
Lac12g2496 1103 Pfam Leucine Rich Repeat 164 186 IPR001611 GO:0005515(InterPro)
Lac12g2496 1103 Pfam Leucine Rich Repeat 191 210 IPR001611 GO:0005515(InterPro)
Lac12g2496 1103 Pfam Leucine Rich Repeat 116 138 IPR001611 GO:0005515(InterPro)
Lac12g2496 1103 Pfam Leucine Rich Repeat 547 569 IPR001611 GO:0005515(InterPro)
Lac12g2496 1103 Pfam Leucine Rich Repeat 500 521 IPR001611 GO:0005515(InterPro)
Lac12g2496 1103 Pfam Protein kinase domain 825 1095 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2496 1103 SUPERFAMILY RNI-like 347 702 - -
Lac12g2496 1103 FunFam Predicted protein 299 397 - -
Lac12g2496 1103 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 181 275 - -
Lac12g2496 1103 Gene3D Phosphorylase Kinase; domain 1 785 896 - -
Lac12g2496 1103 Pfam Leucine rich repeat 284 343 IPR001611 GO:0005515(InterPro)
Lac12g2496 1103 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Lac12g2496 1103 SUPERFAMILY Protein kinase-like (PK-like) 803 1096 IPR011009 -
Lac12g2496 1103 ProSitePatterns Serine/Threonine protein kinases active-site signature. 942 954 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g2496 1103 Gene3D Ribonuclease Inhibitor 25 183 IPR032675 -
Lac12g2496 1103 SUPERFAMILY RNI-like 72 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2496 Lac-Chr12:41967213 Lac2g1122 Lac-Chr2:8921133 1.70E-61 dispersed
Lac12g2494 Lac-Chr12:41951774 Lac12g2496 Lac-Chr12:41967213 1.60E-203 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85831 PF00069 Pkinase 9.00E-46 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2496 K28089 - csv:101204561 1778.45