Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2499 ATGAGACCGCTTCAGCCGCCGCAGGGTGTGAATCCGGCCAACGATCGTCCTCGTCGCCGGCCGAATCTAACCCTTCCGCTCCCGCAGCGGGACAACACGTCGTTGGCCGTGCCTCTCCCTTTACCTCCGACGTCCTCGAACTCCGCTCCGCCTTCCACCAGTCAACTCCACAACGGAAACCGACCGGCGGAGGCTCATCCGCATCCGCATCCGCAGGCGCAGCAGCATCAGGCGTTTAGCCTCTCCGACTTTGAGCGAGTCAGTCGAATCGGAAGTGGATGCGGAGGCACCGTGTACAAAGTGATTCACCGTCCCACCGGCCGAATCTATGCTCTCAAGGTCATTTACGGCAACCACGAGGACGCGGTTCGGCTTCAGATGTGCCGTGAGGTCGAGATCCTTCGCGACGTTGACAATCCCTATGTGGTCAAGTGCCACGATATGTTCGATCACAACGGCGAAATCCAGGTTCTTCTCGAGTACATGGATCGGGGCTCTTTGGAAGGAACGCACATCCCTCAAGAACATCATCTCTCCGATTTGGCTCGCCAGATTCTCAGCGGCCTTGCGTATCTCCATAGCCGCCGCATCGTCCATCGCGACATCAAACCCTCGAATCTCCTAATTAATTCCCGGAGGCAGGTTAAGATCGCCGATTTCGGCGTCGGCCGAATCTTGGAACAGACTATGGATCCTTGCAATTCCTCCGTTGGAACTATTGCGTACATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGCCAGTACAATGGCTACGCAGGGGATATTTGGAGCTTTGGCGTTAGCATATTGGAATTTTATCTTGGACGGTTTCCTCTCGCTGTTGAGAGGCCTGGGGATTGGGCCAGCTTGATGTGTGCTATTTGTATGGCTCAGCCGCCGGAGGCGCCTCCCACGGCGTCGCCGGAGTTTCGCCATTTTATTGCCTGTTGTTTGCAGAGAGAAGCTCGGAAGAGATGGACTGCAGCTGCATTACTGGAACATGCGTTCATAACGAGGAAAAATGGAGCGAGTCAGTACCAGAATCAGCAGCAGACTCAGACTCATCATCAGAATCTTCGTCAACTATTACCTCCTCCACCCCTTCATCCTTCCAGCCTTTCTTGA 1131 54.73 MRPLQPPQGVNPANDRPRRRPNLTLPLPQRDNTSLAVPLPLPPTSSNSAPPSTSQLHNGNRPAEAHPHPHPQAQQHQAFSLSDFERVSRIGSGCGGTVYKVIHRPTGRIYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASPEFRHFIACCLQREARKRWTAAALLEHAFITRKNGASQYQNQQQTQTHHQNLRQLLPPPPLHPSSLS 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41993338 41994468 + Lag0016871.1 Lac12g2499 591096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2499 376 Gene3D Phosphorylase Kinase; domain 1 57 163 - -
Lac12g2499 376 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 73 349 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lac12g2499 376 MobiDBLite consensus disorder prediction 345 362 - -
Lac12g2499 376 Pfam Protein kinase domain 84 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2499 376 MobiDBLite consensus disorder prediction 1 76 - -
Lac12g2499 376 FunFam Dual specificity mitogen-activated protein kinase kinase 70 162 - -
Lac12g2499 376 Gene3D Transferase(Phosphotransferase) domain 1 166 365 - -
Lac12g2499 376 SMART serkin_6 84 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2499 376 CDD PKc_MAPKK_plant_like 82 340 - -
Lac12g2499 376 FunFam Mitogen-activated protein kinase 2 164 352 - -
Lac12g2499 376 MobiDBLite consensus disorder prediction 345 376 - -
Lac12g2499 376 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524(InterPro)
Lac12g2499 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g2499 376 SUPERFAMILY Protein kinase-like (PK-like) 81 361 IPR011009 -
Lac12g2499 376 MobiDBLite consensus disorder prediction 38 60 - -
Lac12g2499 376 ProSiteProfiles Protein kinase domain profile. 84 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0307 Lac-Chr10:2348812 Lac12g2499 Lac-Chr12:41993338 3.90E-83 dispersed
Lac12g2499 Lac-Chr12:41993338 Lac6g3038 Lac-Chr6:47962295 5.30E-55 dispersed
Lac12g2494 Lac-Chr12:41951774 Lac12g2499 Lac-Chr12:41993338 1.30E-16 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85832 PF00069 Pkinase 1.00E-60 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2499 K13413 - csv:101219669 612.068