Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2499 ATGAGACCGCTTCAGCCGCCGCAGGGTGTGAATCCGGCCAACGATCGTCCTCGTCGCCGGCCGAATCTAACCCTTCCGCTCCCGCAGCGGGACAACACGTCGTTGGCCGTGCCTCTCCCTTTACCTCCGACGTCCTCGAACTCCGCTCCGCCTTCCACCAGTCAACTCCACAACGGAAACCGACCGGCGGAGGCTCATCCGCATCCGCATCCGCAGGCGCAGCAGCATCAGGCGTTTAGCCTCTCCGACTTTGAGCGAGTCAGTCGAATCGGAAGTGGATGCGGAGGCACCGTGTACAAAGTGATTCACCGTCCCACCGGCCGAATCTATGCTCTCAAGGTCATTTACGGCAACCACGAGGACGCGGTTCGGCTTCAGATGTGCCGTGAGGTCGAGATCCTTCGCGACGTTGACAATCCCTATGTGGTCAAGTGCCACGATATGTTCGATCACAACGGCGAAATCCAGGTTCTTCTCGAGTACATGGATCGGGGCTCTTTGGAAGGAACGCACATCCCTCAAGAACATCATCTCTCCGATTTGGCTCGCCAGATTCTCAGCGGCCTTGCGTATCTCCATAGCCGCCGCATCGTCCATCGCGACATCAAACCCTCGAATCTCCTAATTAATTCCCGGAGGCAGGTTAAGATCGCCGATTTCGGCGTCGGCCGAATCTTGGAACAGACTATGGATCCTTGCAATTCCTCCGTTGGAACTATTGCGTACATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGCCAGTACAATGGCTACGCAGGGGATATTTGGAGCTTTGGCGTTAGCATATTGGAATTTTATCTTGGACGGTTTCCTCTCGCTGTTGAGAGGCCTGGGGATTGGGCCAGCTTGATGTGTGCTATTTGTATGGCTCAGCCGCCGGAGGCGCCTCCCACGGCGTCGCCGGAGTTTCGCCATTTTATTGCCTGTTGTTTGCAGAGAGAAGCTCGGAAGAGATGGACTGCAGCTGCATTACTGGAACATGCGTTCATAACGAGGAAAAATGGAGCGAGTCAGTACCAGAATCAGCAGCAGACTCAGACTCATCATCAGAATCTTCGTCAACTATTACCTCCTCCACCCCTTCATCCTTCCAGCCTTTCTTGA 1131 54.73 MRPLQPPQGVNPANDRPRRRPNLTLPLPQRDNTSLAVPLPLPPTSSNSAPPSTSQLHNGNRPAEAHPHPHPQAQQHQAFSLSDFERVSRIGSGCGGTVYKVIHRPTGRIYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPQEHHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASPEFRHFIACCLQREARKRWTAAALLEHAFITRKNGASQYQNQQQTQTHHQNLRQLLPPPPLHPSSLS 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41993338 41994468 + Lag0016871.1 Lac12g2499 591096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2499 376 Gene3D Phosphorylase Kinase; domain 1 57 163 - -
Lac12g2499 376 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 73 349 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Lac12g2499 376 MobiDBLite consensus disorder prediction 345 362 - -
Lac12g2499 376 Pfam Protein kinase domain 84 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2499 376 MobiDBLite consensus disorder prediction 1 76 - -
Lac12g2499 376 FunFam Dual specificity mitogen-activated protein kinase kinase 70 162 - -
Lac12g2499 376 Gene3D Transferase(Phosphotransferase) domain 1 166 365 - -
Lac12g2499 376 SMART serkin_6 84 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2499 376 CDD PKc_MAPKK_plant_like 82 340 - -
Lac12g2499 376 FunFam Mitogen-activated protein kinase 2 164 352 - -
Lac12g2499 376 MobiDBLite consensus disorder prediction 345 376 - -
Lac12g2499 376 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524(InterPro)
Lac12g2499 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g2499 376 SUPERFAMILY Protein kinase-like (PK-like) 81 361 IPR011009 -
Lac12g2499 376 MobiDBLite consensus disorder prediction 38 60 - -
Lac12g2499 376 ProSiteProfiles Protein kinase domain profile. 84 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2499 K13413 - - csv:101219669 612.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0307 Lac-Chr10:2348812 Lac12g2499 Lac-Chr12:41993338 3.90E-83 dispersed
Lac12g2499 Lac-Chr12:41993338 Lac6g3038 Lac-Chr6:47962295 5.30E-55 dispersed
Lac12g2494 Lac-Chr12:41951774 Lac12g2499 Lac-Chr12:41993338 1.30E-16 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac3g1054 . 160 470 MAP Kinase Kinase Gene Family AT4G26070 68.1 3.3e-128 455.7
Lac6g3082 . 27 351 MAP Kinase Kinase Gene Family AT4G26070 67.5 8.0e-127 451.1
Lac6g3038 . 16 351 MAP Kinase Kinase Gene Family AT4G26070 54.7 2.2e-108 389.8
Lac3g1054 . 133 443 MAP Kinase Kinase Gene Family AT4G29810 67.5 3.6e-127 452.2
Lac6g3082 . 10 325 MAP Kinase Kinase Gene Family AT4G29810 64.8 1.8e-118 423.3
Lac6g3038 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.4 8.9e-110 394.4
Lac8g0237 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.9 2.2e-229 792.3
Lac12g2499 . 1 374 MAP Kinase Kinase Gene Family AT1G51660 69.1 1.1e-126 450.7
Lac10g0307 . 45 314 MAP Kinase Kinase Gene Family AT1G51660 55.6 5.9e-83 305.4
Lac12g2499 . 1 374 MAP Kinase Kinase Gene Family AT3G21220 67.7 4.8e-127 451.8
Lac10g0307 . 40 310 MAP Kinase Kinase Gene Family AT3G21220 55.4 1.0e-84 311.2
Lac6g3038 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 84.2 1.1e-171 600.1
Lac6g3082 . 1 340 MAP Kinase Kinase Gene Family AT5G56580 57.3 1.4e-110 397.1
Lac3g1054 . 139 469 MAP Kinase Kinase Gene Family AT5G56580 56.8 1.9e-110 396.7
Lac10g0307 . 1 308 MAP Kinase Kinase Gene Family AT1G18350 63.3 6.4e-107 384.8
Lac12g2499 . 76 339 MAP Kinase Kinase Gene Family AT1G18350 52.8 9.0e-77 284.6
Lac10g0307 . 1 296 MAP Kinase Kinase Gene Family AT3G06230 51.6 3.1e-79 292.7
Lac10g0307 . 1 308 MAP Kinase Kinase Gene Family AT1G73500 66.7 1.4e-114 410.2
Lac12g2499 . 80 339 MAP Kinase Kinase Gene Family AT1G73500 53.2 1.8e-77 287.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009405 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85832 PF00069 Pkinase 1.00E-60 CL0016 Lac PK