Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2500 ATGGGGAAGACGCAAGAGGACGATATTTCGCAGAAGCTTCCTAGCTGCTGTGGAGTTGCTATATTGCCTTCCCTTCCTAATCGCCACCGAACTCGTCTTCTTCATCGCTTGATCTATAATTTGTGTGAAGTTGAGATTCTTTTTTCGAAGAACTTTCCTCTGGCTGGCCTCTGCCGGCTGCGCTGGGATTCGACCTGGATATCCTCGTTGCGTCAGTTCAAGTTCGTCTCCAATCTGATGGGATCAACAGAGGAGAAAACAATTTACCTATCAGACGAAGAAATTCCATTGAAGCCATCACCAATTGCGAAAAACGTATTGCATAGTTTTGATTGTGAGACGGCTCATGTGCGTTCTTCCTCAGATGATAAAAGATGGTGGCAGGCTAACAACATTCGTATTAGACCTCTTGAAAGTGCTAAAATAGTGTTGGTTAAAGCAAAGATCAACGTGTTACTACCTTTTGGTCCTTTGGCAATCCTGCTACATTATTTAACTGGAAAGCATGGATGGGTCTTCTTTTTTACTTTACTTGGAATTACACCTCTGGCAGAACGTCTTGGTTATGCAACTGAGCAGCTTGCTTCCTATACTGGACCAACAGTTGGTGGTCTTTTGAATGCAACATTTGGAAATGCAACCGAAATGATTATTTCGATTTATGCCTTAAAGAGTGGGATGATAAGGGTTGTTCAACAGTCTTTACTGGGGTCAATCTTGTCGAATATGCTACTAGTGCTTGGTTGTGCTTTCTTCACCGGTGGGATTGTTCATCATAAGAAAGTGCAGACTTTCAATAAGGGTACTGCTGTTGTGAATTCAGGATTGTTGTTGATGGCTGTTATGGGAACAACTTTTCCGGCTGTGCTTCATTTCACCCACACAGAACTTCATTCTGGAGAGTCAGCATTGTCTCTTTCAAGATTTAGCAGTTGTATAATGTTAATTGCATATGCAAGCTACCTTTTCTTTCAACTAAAAAGTCAGCATAATCTCTATGGTTCTCTGGATGAGGAAGGTGATGATGACGTTGAGGAGGATCCTGAGATTTATGCTTGGGAAGCAATTGGATGGCTTGCTATCTTGACTGTATGGGTATCGGTTTTATCTGGATACCTTGTCGATGCTATCCAGGGAGCATCAGAATCATTAAATTTGCCAGTGGCTTTTATTAGTGTGATTTTGTTGCCAATTGTTGGAAATGCTGCCGAACATGCAAGTGCTATCATGTTTGCCATGAAAGACAAGCTTAACATCACCCTTGGAGTTGCTATTGGATCATCTACACAAATATCCATGTTTGTGATCCCCTTTTGCGTGGTCGTTGGATGGTGTATGGGAAAACCAATGGACTTGAACTTCAAACTCTTTGAGACAGCAACTCTGTTTATCACTGTGCTAGTGGTAGCCTTTATGTTGCAGGAGGGGACATCAAATTATTTCAAAGGTCTTATGCTTATTCTATGCTACCTCATAGTGGCAGCCAGCTTTTTTGTACATGTTGACCCTAGCAATGTTCTCAAACCACCATTGCTTCAGTTCGTGGAACCTGCAAACATTAGAGGACTCACACGAAAGGTTTGGGCTTCAGATGGAGTCTAA 1602 42.13 MGKTQEDDISQKLPSCCGVAILPSLPNRHRTRLLHRLIYNLCEVEILFSKNFPLAGLCRLRWDSTWISSLRQFKFVSNLMGSTEEKTIYLSDEEIPLKPSPIAKNVLHSFDCETAHVRSSSDDKRWWQANNIRIRPLESAKIVLVKAKINVLLPFGPLAILLHYLTGKHGWVFFFTLLGITPLAERLGYATEQLASYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHHKKVQTFNKGTAVVNSGLLLMAVMGTTFPAVLHFTHTELHSGESALSLSRFSSCIMLIAYASYLFFQLKSQHNLYGSLDEEGDDDVEEDPEIYAWEAIGWLAILTVWVSVLSGYLVDAIQGASESLNLPVAFISVILLPIVGNAAEHASAIMFAMKDKLNITLGVAIGSSTQISMFVIPFCVVVGWCMGKPMDLNFKLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDPSNVLKPPLLQFVEPANIRGLTRKVWASDGV 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 41995758 42000909 + Lag0016872.1 Lac12g2500 591097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2500 533 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 113 503 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Lac12g2500 533 NCBIfam calcium/proton exchanger 152 498 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Lac12g2500 533 FunFam Vacuolar cation/proton exchanger 343 499 - -
Lac12g2500 533 Gene3D - 200 339 IPR044880 -
Lac12g2500 533 Gene3D - 344 499 IPR044880 -
Lac12g2500 533 FunFam Vacuolar cation/proton exchanger 200 339 - -
Lac12g2500 533 Pfam Sodium/calcium exchanger protein 355 497 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Lac12g2500 533 Pfam Sodium/calcium exchanger protein 171 326 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2500 Lac-Chr12:41995758 Lac9g1936 Lac-Chr9:39140096 3.00E-160 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2500 K07300 - csv:101219432 777.704