Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac12g2500 | ATGGGGAAGACGCAAGAGGACGATATTTCGCAGAAGCTTCCTAGCTGCTGTGGAGTTGCTATATTGCCTTCCCTTCCTAATCGCCACCGAACTCGTCTTCTTCATCGCTTGATCTATAATTTGTGTGAAGTTGAGATTCTTTTTTCGAAGAACTTTCCTCTGGCTGGCCTCTGCCGGCTGCGCTGGGATTCGACCTGGATATCCTCGTTGCGTCAGTTCAAGTTCGTCTCCAATCTGATGGGATCAACAGAGGAGAAAACAATTTACCTATCAGACGAAGAAATTCCATTGAAGCCATCACCAATTGCGAAAAACGTATTGCATAGTTTTGATTGTGAGACGGCTCATGTGCGTTCTTCCTCAGATGATAAAAGATGGTGGCAGGCTAACAACATTCGTATTAGACCTCTTGAAAGTGCTAAAATAGTGTTGGTTAAAGCAAAGATCAACGTGTTACTACCTTTTGGTCCTTTGGCAATCCTGCTACATTATTTAACTGGAAAGCATGGATGGGTCTTCTTTTTTACTTTACTTGGAATTACACCTCTGGCAGAACGTCTTGGTTATGCAACTGAGCAGCTTGCTTCCTATACTGGACCAACAGTTGGTGGTCTTTTGAATGCAACATTTGGAAATGCAACCGAAATGATTATTTCGATTTATGCCTTAAAGAGTGGGATGATAAGGGTTGTTCAACAGTCTTTACTGGGGTCAATCTTGTCGAATATGCTACTAGTGCTTGGTTGTGCTTTCTTCACCGGTGGGATTGTTCATCATAAGAAAGTGCAGACTTTCAATAAGGGTACTGCTGTTGTGAATTCAGGATTGTTGTTGATGGCTGTTATGGGAACAACTTTTCCGGCTGTGCTTCATTTCACCCACACAGAACTTCATTCTGGAGAGTCAGCATTGTCTCTTTCAAGATTTAGCAGTTGTATAATGTTAATTGCATATGCAAGCTACCTTTTCTTTCAACTAAAAAGTCAGCATAATCTCTATGGTTCTCTGGATGAGGAAGGTGATGATGACGTTGAGGAGGATCCTGAGATTTATGCTTGGGAAGCAATTGGATGGCTTGCTATCTTGACTGTATGGGTATCGGTTTTATCTGGATACCTTGTCGATGCTATCCAGGGAGCATCAGAATCATTAAATTTGCCAGTGGCTTTTATTAGTGTGATTTTGTTGCCAATTGTTGGAAATGCTGCCGAACATGCAAGTGCTATCATGTTTGCCATGAAAGACAAGCTTAACATCACCCTTGGAGTTGCTATTGGATCATCTACACAAATATCCATGTTTGTGATCCCCTTTTGCGTGGTCGTTGGATGGTGTATGGGAAAACCAATGGACTTGAACTTCAAACTCTTTGAGACAGCAACTCTGTTTATCACTGTGCTAGTGGTAGCCTTTATGTTGCAGGAGGGGACATCAAATTATTTCAAAGGTCTTATGCTTATTCTATGCTACCTCATAGTGGCAGCCAGCTTTTTTGTACATGTTGACCCTAGCAATGTTCTCAAACCACCATTGCTTCAGTTCGTGGAACCTGCAAACATTAGAGGACTCACACGAAAGGTTTGGGCTTCAGATGGAGTCTAA | 1602 | 42.13 | MGKTQEDDISQKLPSCCGVAILPSLPNRHRTRLLHRLIYNLCEVEILFSKNFPLAGLCRLRWDSTWISSLRQFKFVSNLMGSTEEKTIYLSDEEIPLKPSPIAKNVLHSFDCETAHVRSSSDDKRWWQANNIRIRPLESAKIVLVKAKINVLLPFGPLAILLHYLTGKHGWVFFFTLLGITPLAERLGYATEQLASYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHHKKVQTFNKGTAVVNSGLLLMAVMGTTFPAVLHFTHTELHSGESALSLSRFSSCIMLIAYASYLFFQLKSQHNLYGSLDEEGDDDVEEDPEIYAWEAIGWLAILTVWVSVLSGYLVDAIQGASESLNLPVAFISVILLPIVGNAAEHASAIMFAMKDKLNITLGVAIGSSTQISMFVIPFCVVVGWCMGKPMDLNFKLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDPSNVLKPPLLQFVEPANIRGLTRKVWASDGV | 533 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 41995758 | 42000909 | + | Lag0016872.1 | Lac12g2500 | 591097 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac12g2500 | 533 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 113 | 503 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) | |
Lac12g2500 | 533 | NCBIfam | calcium/proton exchanger | 152 | 498 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) | |
Lac12g2500 | 533 | FunFam | Vacuolar cation/proton exchanger | 343 | 499 | - | - | |
Lac12g2500 | 533 | Gene3D | - | 200 | 339 | IPR044880 | - | |
Lac12g2500 | 533 | Gene3D | - | 344 | 499 | IPR044880 | - | |
Lac12g2500 | 533 | FunFam | Vacuolar cation/proton exchanger | 200 | 339 | - | - | |
Lac12g2500 | 533 | Pfam | Sodium/calcium exchanger protein | 355 | 497 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Lac12g2500 | 533 | Pfam | Sodium/calcium exchanger protein | 171 | 326 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g2500 | Lac-Chr12:41995758 | Lac9g1936 | Lac-Chr9:39140096 | 3.00E-160 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac12g2500 | K07300 | - | csv:101219432 | 777.704 |