Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2502 ATGCAGTGTGATGCAGATTCTGCATCATCTCACGTATGGTGTGGCTGCTTTTTCAAACCCGAATTCGTTGAGAGATATGGAGATTTGCTTCTCGTTTCATTGAACATTAATTTTGGATCACCCCCGATATGGAAGGAGGATAGTGCAATACCGGAGACAACCAAGAAACGGGGCCCGGAGGAAGAACAGGTCGGAGGGTCGGGCCTTGGCCCAACCCATATGGTCGGCCTCGGTCGAGGCCGACCACTCAGCCCACTTGCGTGTGTCGAGTCCTTCTACCTCCGTTCGATCTTTGCCCTGTCCGCCCCGGTTCCACTCGGTATTAGAGTGCAGGTGGCTTGCACCACACCGGTGTGCAGCGGTTCTGGTTGGTCGTCACATCTTCCCCGTCATCCACAAATTCACTGCTGGTGTTACGTGAAAGTCAGGCGTGGGCTCCTTCCAATTTCCAAGCTTTGTGCTTTCTGTCACAAAACTGTTTGTGAAAATGCCGCAGAGGCAGACCCCACTCCAAAGTTGTCGTGGAGCGCAACATTTGCGAGCTCTCCCACCATTCGTCCGGAGTTCTGCTCCTTTGTTGGGCTTTGCATTTGTCTTTCACTCCTTCAGATATTCCAATTAATTTTCTACAGCCTTGGTGCTGGCTACATTAGAGCTGGAAATCCTCCTCGAGTGACTGTTTCTTGGAATCATTTATTCCCAATATCCACCCCATCAGAATCGACGGCAGAGGAGGAGAGAGCACAAGTGACTGAGAGAGAAATGGTGAAGAAATGGAGTTGGGGAGAGGCGTTGCTGCTAATCAATATCTGCATTTTGGGATGGAGGGCCAGTTTTATCAATGGAGCTACGGATCCAGGAGATGTGTCTGCTCTAAATGCTATGTATACTAGTTTAAACTCGCCTCCAATTCTAACACTATGGAGTGCAAGTGGTGGAGATCCATGTGGGCAGCTTTGGAAAGGCATTACTTGCTCAGGCTCACGGGTTACAGAAATTTCATTGTCTGGTTTAGGACTTTCAGGATCACTGGGATACCAGCTCTCAAGTTTAACATCTCTAATTAACCTAGACGTGAGTATCAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACATGCAAAAACTAAACCTTGGATGGAATAACTTCAGTGGAAGCATTCCCTATTCTATTTCCCAAATGAGTTTGCTTATTTCCTTGAATATCAGCCACAATCAGCTTCGGAATCAAGTGAACGACATGTTCTGGAAGCTTTCATCCCTGTCCATGTTGTGTCCTCCCCAGAGTTTTAGCAACCTAACCAGTATGAACTCAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAACTCTTCCACTACAAAACTTGAATGTCGAGAACAACCATTTTACTGGATGGGTTCCTGAACGATTGAAGAACATAAACATTCAGGAGGGTGGAAATTCTTGGAGCTTTGGGCTTGCACCCCCACCTCCACCCGGTACACCTCCAGCCAACCAAAATTACAGATATCACAAGCCTGGGAACAATTACAGCCCACTGAGTAGTGGTGCTGCTGGTGGAGACAGCAGAAGATCAGGAATCAGTGGTGGCGCCATTGCTGGAATCCTTATATCTGTGCTAGTAGTGGGAGCAGTACTAGCATATCTCTTTGTAAAGAGAAGACCCAAGAAGTCATCCACAGACATAGAAAAGCAAAAGCTTGGGAACCAGCCTAGCGTATCCCCTGCTTCAAATGTTCTGCAAGTTTTTCCAAAGCTTTTGAGTACTTTTCCTCTGTGCACGTTTAGCTTTTGCCAATTGGTCTGCTCTTGCTTGCAACATTTAGAATCACAAGGCCACATCTTTTGTCCACGCATTGGATTCTCCTGCTTCAATCAATCTAAAACCCCACCCATCGATCGTCATAAATCATTTGATGACAATGATACATTGACGATACCTGTTGTGAAGAAGACCAATGTCACTCCTCCAATAAGTGTGAAGTCATATTCAATAGCAGAGCTGCAAATGGCTACAGGCAGTTTCAATGGAGAAAACCTTCTTGGCGAGGGATCACTTGGACGGGTTTATCGGGCTCAGTTCGACGATGGGAAGGTTCTTGCTGTGAAGAAAATAGATTCAGCTGCCCTCCCCAGAGAATTGTTGGAAGATTTCACAGAGATCGTTGCTAATGTTTCTCAGTTGCATCATCCTAATGTAACCGAGCTAATGGGTTATTGCTCAGAGCATGGTCTGCATTTGCTACTATATGAGTTCCATAAGAATGGCTCACTACATGACTTCTTGCACATATCAGATGAATATAGCAAGCCATTGACTTGGAACTCTCGTGTCAAGATTGCTTTGGGGACAGCCCGTGCATTAGAGTATCTACATGAAGTTTGTGCACCATCAGTTGTTCACAGAAATATCAAGTCAGCCAATATCTTACTGGATGCTGAACTTAATCCTCATCTCTCTGATTGTGGATTGGCTAGCTTTATAACTAATCTAGATCAGGCATTAGATCAGCAGGCAGGATCTGGATACAGTGCCCCTGAGGTTACTATGTCTGGTCAATATACATTACAAAGTGACGTATATAGCTTTGGAGTGGTGATGTTGGAACTTCTAAGTGGTCTTACGCCGTTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCTACACCTCAGCTCCATGACATTGATGCCTTGACGAAAATGGTTGATCCTGCACTAAAAGGTCTTTACCCAGTTAAGTCTCTCTCAAGATTTGCAGACGTTGTGGCTCTCTGCGTCCAGCCCGAACCTGAATTTAGACCTCCCATGTCAGAGGTGGTGGAAGCGTTGGTGCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGTGATCATGGATCATCCTTTAGAACTGATGAACCTGATGCACAAGAGACATCTTAA 2970 45.76 MQCDADSASSHVWCGCFFKPEFVERYGDLLLVSLNINFGSPPIWKEDSAIPETTKKRGPEEEQVGGSGLGPTHMVGLGRGRPLSPLACVESFYLRSIFALSAPVPLGIRVQVACTTPVCSGSGWSSHLPRHPQIHCWCYVKVRRGLLPISKLCAFCHKTVCENAAEADPTPKLSWSATFASSPTIRPEFCSFVGLCICLSLLQIFQLIFYSLGAGYIRAGNPPRVTVSWNHLFPISTPSESTAEEERAQVTEREMVKKWSWGEALLLINICILGWRASFINGATDPGDVSALNAMYTSLNSPPILTLWSASGGDPCGQLWKGITCSGSRVTEISLSGLGLSGSLGYQLSSLTSLINLDVSINNLGPDIPYQLPQNMQKLNLGWNNFSGSIPYSISQMSLLISLNISHNQLRNQVNDMFWKLSSLSMLCPPQSFSNLTSMNSMFLQNNQFSGTIDVLATLPLQNLNVENNHFTGWVPERLKNINIQEGGNSWSFGLAPPPPPGTPPANQNYRYHKPGNNYSPLSSGAAGGDSRRSGISGGAIAGILISVLVVGAVLAYLFVKRRPKKSSTDIEKQKLGNQPSVSPASNVLQVFPKLLSTFPLCTFSFCQLVCSCLQHLESQGHIFCPRIGFSCFNQSKTPPIDRHKSFDDNDTLTIPVVKKTNVTPPISVKSYSIAELQMATGSFNGENLLGEGSLGRVYRAQFDDGKVLAVKKIDSAALPRELLEDFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSANILLDAELNPHLSDCGLASFITNLDQALDQQAGSGYSAPEVTMSGQYTLQSDVYSFGVVMLELLSGLTPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDEPDAQETS 989
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42005360 42014038 + Lag0016874.1 Lac12g2502 591099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2502 989 Gene3D Ribonuclease Inhibitor 424 492 IPR032675 -
Lac12g2502 989 PANTHER LEUCINE RICH REPEAT KINASE 2 287 500 IPR051420 -
Lac12g2502 989 MobiDBLite consensus disorder prediction 49 72 - -
Lac12g2502 989 MobiDBLite consensus disorder prediction 967 989 - -
Lac12g2502 989 CDD STKc_IRAK 690 959 - -
Lac12g2502 989 Gene3D Phosphorylase Kinase; domain 1 651 761 - -
Lac12g2502 989 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 285 502 - -
Lac12g2502 989 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 649 761 - -
Lac12g2502 989 SUPERFAMILY L domain-like 284 481 - -
Lac12g2502 989 MobiDBLite consensus disorder prediction 974 989 - -
Lac12g2502 989 MobiDBLite consensus disorder prediction 490 515 - -
Lac12g2502 989 SUPERFAMILY Protein kinase-like (PK-like) 664 956 IPR011009 -
Lac12g2502 989 Gene3D Transferase(Phosphotransferase) domain 1 763 979 - -
Lac12g2502 989 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 762 970 - -
Lac12g2502 989 ProSiteProfiles Protein kinase domain profile. 684 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2502 989 Gene3D Ribonuclease Inhibitor 287 423 IPR032675 -
Lac12g2502 989 Pfam Protein tyrosine and serine/threonine kinase 688 956 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g2502 989 Pfam Leucine rich repeat N-terminal domain 286 326 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2502 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1387 Lac-Chr10:12917447 Lac12g2502 Lac-Chr12:42005360 1.00E-144 dispersed
Lac10g2568 Lac-Chr10:39670069 Lac12g2502 Lac-Chr12:42005360 9.20E-85 dispersed
Lac10g2573 Lac-Chr10:39692027 Lac12g2502 Lac-Chr12:42005360 4.10E-108 dispersed
Lac12g0685 Lac-Chr12:7156009 Lac12g2502 Lac-Chr12:42005360 4.90E-103 dispersed
Lac12g2502 Lac-Chr12:42005360 Lac8g1144 Lac-Chr8:24508255 1.00E-153 dispersed
Lac13g0262 Lac-Chr13:1875549 Lac12g2502 Lac-Chr12:42005360 1.90E-20 dispersed
Lac12g2502 Lac-Chr12:42005360 Lac4g3072 Lac-Chr4:48844313 7.50E-210 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac12g0685 . 34 777 Strubbelig Receptor Gene Family AT4G03390 62.7 3.1e-203 706.1
Lac1g3304 . 175 877 Strubbelig Receptor Gene Family AT4G03390 55.1 4.5e-157 552.7
Lac10g2573 . 107 833 Strubbelig Receptor Gene Family AT5G06820 54.9 6.9e-192 668.3
Lac8g1144 . 22 696 Strubbelig Receptor Gene Family AT1G78980 61.0 9.2e-186 647.9
Lac4g3072 . 24 690 Strubbelig Receptor Gene Family AT1G78980 52.4 3.4e-132 469.9
Lac8g1144 . 4 674 Strubbelig Receptor Gene Family AT3G13065 53.6 2.1e-142 503.8
Lac10g1387 . 390 683 Strubbelig Receptor Gene Family AT1G11130 53.7 3.1e-85 313.9
Lac10g2573 . 107 833 Strubbelig Receptor Gene Family AT5G06820 54.9 6.9e-192 668.3
Lac12g0685 . 34 777 Strubbelig Receptor Gene Family AT4G03390 62.7 3.1e-203 706.1
Lac1g3304 . 175 877 Strubbelig Receptor Gene Family AT4G03390 55.1 4.5e-157 552.7
Lac8g1144 . 4 674 Strubbelig Receptor Gene Family AT3G13065 53.6 2.1e-142 503.8
Lac8g1144 . 22 696 Strubbelig Receptor Gene Family AT1G78980 61.0 9.2e-186 647.9
Lac4g3072 . 24 690 Strubbelig Receptor Gene Family AT1G78980 52.4 3.4e-132 469.9
Lac12g2502 . 255 973 Strubbelig Receptor Gene Family AT1G53730 55.1 1.2e-201 700.7
Lac4g3072 . 1 712 Strubbelig Receptor Gene Family AT1G53730 61.6 2.3e-192 669.8
Lac8g1144 . 5 682 Strubbelig Receptor Gene Family AT1G53730 51.4 4.0e-152 536.2
Lac12g2502 . 265 977 Strubbelig Receptor Gene Family AT3G14350 51.0 1.6e-182 637.1
Lac4g3072 . 10 696 Strubbelig Receptor Gene Family AT3G14350 56.4 9.7e-172 601.3
Lac10g1387 . 338 713 Strubbelig Receptor Gene Family AT4G22130 81.9 2.6e-175 612.8
Lac12g2502 . 661 989 Strubbelig Receptor Gene Family AT4G22130 63.4 1.2e-119 427.9
Lac4g3072 . 391 704 Strubbelig Receptor Gene Family AT4G22130 65.8 3.0e-118 423.3
Lac12g0685 . 474 769 Strubbelig Receptor Gene Family AT4G22130 62.0 1.5e-106 384.4
Lac8g1144 . 346 696 Strubbelig Receptor Gene Family AT4G22130 52.5 1.4e-99 361.3
Lac10g2573 . 485 807 Strubbelig Receptor Gene Family AT4G22130 52.6 8.7e-94 342.0
Lac1g3304 . 610 877 Strubbelig Receptor Gene Family AT4G22130 60.0 1.7e-89 327.8
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85833 PF07714 PK_Tyr_Ser-Thr 2.30E-40 CL0016 Lac PK