Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac12g2502 | ATGCAGTGTGATGCAGATTCTGCATCATCTCACGTATGGTGTGGCTGCTTTTTCAAACCCGAATTCGTTGAGAGATATGGAGATTTGCTTCTCGTTTCATTGAACATTAATTTTGGATCACCCCCGATATGGAAGGAGGATAGTGCAATACCGGAGACAACCAAGAAACGGGGCCCGGAGGAAGAACAGGTCGGAGGGTCGGGCCTTGGCCCAACCCATATGGTCGGCCTCGGTCGAGGCCGACCACTCAGCCCACTTGCGTGTGTCGAGTCCTTCTACCTCCGTTCGATCTTTGCCCTGTCCGCCCCGGTTCCACTCGGTATTAGAGTGCAGGTGGCTTGCACCACACCGGTGTGCAGCGGTTCTGGTTGGTCGTCACATCTTCCCCGTCATCCACAAATTCACTGCTGGTGTTACGTGAAAGTCAGGCGTGGGCTCCTTCCAATTTCCAAGCTTTGTGCTTTCTGTCACAAAACTGTTTGTGAAAATGCCGCAGAGGCAGACCCCACTCCAAAGTTGTCGTGGAGCGCAACATTTGCGAGCTCTCCCACCATTCGTCCGGAGTTCTGCTCCTTTGTTGGGCTTTGCATTTGTCTTTCACTCCTTCAGATATTCCAATTAATTTTCTACAGCCTTGGTGCTGGCTACATTAGAGCTGGAAATCCTCCTCGAGTGACTGTTTCTTGGAATCATTTATTCCCAATATCCACCCCATCAGAATCGACGGCAGAGGAGGAGAGAGCACAAGTGACTGAGAGAGAAATGGTGAAGAAATGGAGTTGGGGAGAGGCGTTGCTGCTAATCAATATCTGCATTTTGGGATGGAGGGCCAGTTTTATCAATGGAGCTACGGATCCAGGAGATGTGTCTGCTCTAAATGCTATGTATACTAGTTTAAACTCGCCTCCAATTCTAACACTATGGAGTGCAAGTGGTGGAGATCCATGTGGGCAGCTTTGGAAAGGCATTACTTGCTCAGGCTCACGGGTTACAGAAATTTCATTGTCTGGTTTAGGACTTTCAGGATCACTGGGATACCAGCTCTCAAGTTTAACATCTCTAATTAACCTAGACGTGAGTATCAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACATGCAAAAACTAAACCTTGGATGGAATAACTTCAGTGGAAGCATTCCCTATTCTATTTCCCAAATGAGTTTGCTTATTTCCTTGAATATCAGCCACAATCAGCTTCGGAATCAAGTGAACGACATGTTCTGGAAGCTTTCATCCCTGTCCATGTTGTGTCCTCCCCAGAGTTTTAGCAACCTAACCAGTATGAACTCAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAACTCTTCCACTACAAAACTTGAATGTCGAGAACAACCATTTTACTGGATGGGTTCCTGAACGATTGAAGAACATAAACATTCAGGAGGGTGGAAATTCTTGGAGCTTTGGGCTTGCACCCCCACCTCCACCCGGTACACCTCCAGCCAACCAAAATTACAGATATCACAAGCCTGGGAACAATTACAGCCCACTGAGTAGTGGTGCTGCTGGTGGAGACAGCAGAAGATCAGGAATCAGTGGTGGCGCCATTGCTGGAATCCTTATATCTGTGCTAGTAGTGGGAGCAGTACTAGCATATCTCTTTGTAAAGAGAAGACCCAAGAAGTCATCCACAGACATAGAAAAGCAAAAGCTTGGGAACCAGCCTAGCGTATCCCCTGCTTCAAATGTTCTGCAAGTTTTTCCAAAGCTTTTGAGTACTTTTCCTCTGTGCACGTTTAGCTTTTGCCAATTGGTCTGCTCTTGCTTGCAACATTTAGAATCACAAGGCCACATCTTTTGTCCACGCATTGGATTCTCCTGCTTCAATCAATCTAAAACCCCACCCATCGATCGTCATAAATCATTTGATGACAATGATACATTGACGATACCTGTTGTGAAGAAGACCAATGTCACTCCTCCAATAAGTGTGAAGTCATATTCAATAGCAGAGCTGCAAATGGCTACAGGCAGTTTCAATGGAGAAAACCTTCTTGGCGAGGGATCACTTGGACGGGTTTATCGGGCTCAGTTCGACGATGGGAAGGTTCTTGCTGTGAAGAAAATAGATTCAGCTGCCCTCCCCAGAGAATTGTTGGAAGATTTCACAGAGATCGTTGCTAATGTTTCTCAGTTGCATCATCCTAATGTAACCGAGCTAATGGGTTATTGCTCAGAGCATGGTCTGCATTTGCTACTATATGAGTTCCATAAGAATGGCTCACTACATGACTTCTTGCACATATCAGATGAATATAGCAAGCCATTGACTTGGAACTCTCGTGTCAAGATTGCTTTGGGGACAGCCCGTGCATTAGAGTATCTACATGAAGTTTGTGCACCATCAGTTGTTCACAGAAATATCAAGTCAGCCAATATCTTACTGGATGCTGAACTTAATCCTCATCTCTCTGATTGTGGATTGGCTAGCTTTATAACTAATCTAGATCAGGCATTAGATCAGCAGGCAGGATCTGGATACAGTGCCCCTGAGGTTACTATGTCTGGTCAATATACATTACAAAGTGACGTATATAGCTTTGGAGTGGTGATGTTGGAACTTCTAAGTGGTCTTACGCCGTTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCTACACCTCAGCTCCATGACATTGATGCCTTGACGAAAATGGTTGATCCTGCACTAAAAGGTCTTTACCCAGTTAAGTCTCTCTCAAGATTTGCAGACGTTGTGGCTCTCTGCGTCCAGCCCGAACCTGAATTTAGACCTCCCATGTCAGAGGTGGTGGAAGCGTTGGTGCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGTGATCATGGATCATCCTTTAGAACTGATGAACCTGATGCACAAGAGACATCTTAA | 2970 | 45.76 | MQCDADSASSHVWCGCFFKPEFVERYGDLLLVSLNINFGSPPIWKEDSAIPETTKKRGPEEEQVGGSGLGPTHMVGLGRGRPLSPLACVESFYLRSIFALSAPVPLGIRVQVACTTPVCSGSGWSSHLPRHPQIHCWCYVKVRRGLLPISKLCAFCHKTVCENAAEADPTPKLSWSATFASSPTIRPEFCSFVGLCICLSLLQIFQLIFYSLGAGYIRAGNPPRVTVSWNHLFPISTPSESTAEEERAQVTEREMVKKWSWGEALLLINICILGWRASFINGATDPGDVSALNAMYTSLNSPPILTLWSASGGDPCGQLWKGITCSGSRVTEISLSGLGLSGSLGYQLSSLTSLINLDVSINNLGPDIPYQLPQNMQKLNLGWNNFSGSIPYSISQMSLLISLNISHNQLRNQVNDMFWKLSSLSMLCPPQSFSNLTSMNSMFLQNNQFSGTIDVLATLPLQNLNVENNHFTGWVPERLKNINIQEGGNSWSFGLAPPPPPGTPPANQNYRYHKPGNNYSPLSSGAAGGDSRRSGISGGAIAGILISVLVVGAVLAYLFVKRRPKKSSTDIEKQKLGNQPSVSPASNVLQVFPKLLSTFPLCTFSFCQLVCSCLQHLESQGHIFCPRIGFSCFNQSKTPPIDRHKSFDDNDTLTIPVVKKTNVTPPISVKSYSIAELQMATGSFNGENLLGEGSLGRVYRAQFDDGKVLAVKKIDSAALPRELLEDFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSANILLDAELNPHLSDCGLASFITNLDQALDQQAGSGYSAPEVTMSGQYTLQSDVYSFGVVMLELLSGLTPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDEPDAQETS | 989 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 42005360 | 42014038 | + | Lag0016874.1 | Lac12g2502 | 591099 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac12g2502 | 989 | Gene3D | Ribonuclease Inhibitor | 424 | 492 | IPR032675 | - | |
Lac12g2502 | 989 | PANTHER | LEUCINE RICH REPEAT KINASE 2 | 287 | 500 | IPR051420 | - | |
Lac12g2502 | 989 | MobiDBLite | consensus disorder prediction | 49 | 72 | - | - | |
Lac12g2502 | 989 | MobiDBLite | consensus disorder prediction | 967 | 989 | - | - | |
Lac12g2502 | 989 | CDD | STKc_IRAK | 690 | 959 | - | - | |
Lac12g2502 | 989 | Gene3D | Phosphorylase Kinase; domain 1 | 651 | 761 | - | - | |
Lac12g2502 | 989 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 3 | 285 | 502 | - | - | |
Lac12g2502 | 989 | FunFam | Protein STRUBBELIG-RECEPTOR FAMILY 8 | 649 | 761 | - | - | |
Lac12g2502 | 989 | SUPERFAMILY | L domain-like | 284 | 481 | - | - | |
Lac12g2502 | 989 | MobiDBLite | consensus disorder prediction | 974 | 989 | - | - | |
Lac12g2502 | 989 | MobiDBLite | consensus disorder prediction | 490 | 515 | - | - | |
Lac12g2502 | 989 | SUPERFAMILY | Protein kinase-like (PK-like) | 664 | 956 | IPR011009 | - | |
Lac12g2502 | 989 | Gene3D | Transferase(Phosphotransferase) domain 1 | 763 | 979 | - | - | |
Lac12g2502 | 989 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 8 | 762 | 970 | - | - | |
Lac12g2502 | 989 | ProSiteProfiles | Protein kinase domain profile. | 684 | 959 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac12g2502 | 989 | Gene3D | Ribonuclease Inhibitor | 287 | 423 | IPR032675 | - | |
Lac12g2502 | 989 | Pfam | Protein tyrosine and serine/threonine kinase | 688 | 956 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac12g2502 | 989 | Pfam | Leucine rich repeat N-terminal domain | 286 | 326 | IPR013210 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g1387 | Lac-Chr10:12917447 | Lac12g2502 | Lac-Chr12:42005360 | 1.00E-144 | dispersed | |
Lac10g2568 | Lac-Chr10:39670069 | Lac12g2502 | Lac-Chr12:42005360 | 9.20E-85 | dispersed | |
Lac10g2573 | Lac-Chr10:39692027 | Lac12g2502 | Lac-Chr12:42005360 | 4.10E-108 | dispersed | |
Lac12g0685 | Lac-Chr12:7156009 | Lac12g2502 | Lac-Chr12:42005360 | 4.90E-103 | dispersed | |
Lac12g2502 | Lac-Chr12:42005360 | Lac8g1144 | Lac-Chr8:24508255 | 1.00E-153 | dispersed | |
Lac13g0262 | Lac-Chr13:1875549 | Lac12g2502 | Lac-Chr12:42005360 | 1.90E-20 | dispersed | |
Lac12g2502 | Lac-Chr12:42005360 | Lac4g3072 | Lac-Chr4:48844313 | 7.50E-210 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85833 | PF07714 | PK_Tyr_Ser-Thr | 2.30E-40 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac12g2502 | - | - | - | 0.0 |