Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2502 ATGCAGTGTGATGCAGATTCTGCATCATCTCACGTATGGTGTGGCTGCTTTTTCAAACCCGAATTCGTTGAGAGATATGGAGATTTGCTTCTCGTTTCATTGAACATTAATTTTGGATCACCCCCGATATGGAAGGAGGATAGTGCAATACCGGAGACAACCAAGAAACGGGGCCCGGAGGAAGAACAGGTCGGAGGGTCGGGCCTTGGCCCAACCCATATGGTCGGCCTCGGTCGAGGCCGACCACTCAGCCCACTTGCGTGTGTCGAGTCCTTCTACCTCCGTTCGATCTTTGCCCTGTCCGCCCCGGTTCCACTCGGTATTAGAGTGCAGGTGGCTTGCACCACACCGGTGTGCAGCGGTTCTGGTTGGTCGTCACATCTTCCCCGTCATCCACAAATTCACTGCTGGTGTTACGTGAAAGTCAGGCGTGGGCTCCTTCCAATTTCCAAGCTTTGTGCTTTCTGTCACAAAACTGTTTGTGAAAATGCCGCAGAGGCAGACCCCACTCCAAAGTTGTCGTGGAGCGCAACATTTGCGAGCTCTCCCACCATTCGTCCGGAGTTCTGCTCCTTTGTTGGGCTTTGCATTTGTCTTTCACTCCTTCAGATATTCCAATTAATTTTCTACAGCCTTGGTGCTGGCTACATTAGAGCTGGAAATCCTCCTCGAGTGACTGTTTCTTGGAATCATTTATTCCCAATATCCACCCCATCAGAATCGACGGCAGAGGAGGAGAGAGCACAAGTGACTGAGAGAGAAATGGTGAAGAAATGGAGTTGGGGAGAGGCGTTGCTGCTAATCAATATCTGCATTTTGGGATGGAGGGCCAGTTTTATCAATGGAGCTACGGATCCAGGAGATGTGTCTGCTCTAAATGCTATGTATACTAGTTTAAACTCGCCTCCAATTCTAACACTATGGAGTGCAAGTGGTGGAGATCCATGTGGGCAGCTTTGGAAAGGCATTACTTGCTCAGGCTCACGGGTTACAGAAATTTCATTGTCTGGTTTAGGACTTTCAGGATCACTGGGATACCAGCTCTCAAGTTTAACATCTCTAATTAACCTAGACGTGAGTATCAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACATGCAAAAACTAAACCTTGGATGGAATAACTTCAGTGGAAGCATTCCCTATTCTATTTCCCAAATGAGTTTGCTTATTTCCTTGAATATCAGCCACAATCAGCTTCGGAATCAAGTGAACGACATGTTCTGGAAGCTTTCATCCCTGTCCATGTTGTGTCCTCCCCAGAGTTTTAGCAACCTAACCAGTATGAACTCAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAACTCTTCCACTACAAAACTTGAATGTCGAGAACAACCATTTTACTGGATGGGTTCCTGAACGATTGAAGAACATAAACATTCAGGAGGGTGGAAATTCTTGGAGCTTTGGGCTTGCACCCCCACCTCCACCCGGTACACCTCCAGCCAACCAAAATTACAGATATCACAAGCCTGGGAACAATTACAGCCCACTGAGTAGTGGTGCTGCTGGTGGAGACAGCAGAAGATCAGGAATCAGTGGTGGCGCCATTGCTGGAATCCTTATATCTGTGCTAGTAGTGGGAGCAGTACTAGCATATCTCTTTGTAAAGAGAAGACCCAAGAAGTCATCCACAGACATAGAAAAGCAAAAGCTTGGGAACCAGCCTAGCGTATCCCCTGCTTCAAATGTTCTGCAAGTTTTTCCAAAGCTTTTGAGTACTTTTCCTCTGTGCACGTTTAGCTTTTGCCAATTGGTCTGCTCTTGCTTGCAACATTTAGAATCACAAGGCCACATCTTTTGTCCACGCATTGGATTCTCCTGCTTCAATCAATCTAAAACCCCACCCATCGATCGTCATAAATCATTTGATGACAATGATACATTGACGATACCTGTTGTGAAGAAGACCAATGTCACTCCTCCAATAAGTGTGAAGTCATATTCAATAGCAGAGCTGCAAATGGCTACAGGCAGTTTCAATGGAGAAAACCTTCTTGGCGAGGGATCACTTGGACGGGTTTATCGGGCTCAGTTCGACGATGGGAAGGTTCTTGCTGTGAAGAAAATAGATTCAGCTGCCCTCCCCAGAGAATTGTTGGAAGATTTCACAGAGATCGTTGCTAATGTTTCTCAGTTGCATCATCCTAATGTAACCGAGCTAATGGGTTATTGCTCAGAGCATGGTCTGCATTTGCTACTATATGAGTTCCATAAGAATGGCTCACTACATGACTTCTTGCACATATCAGATGAATATAGCAAGCCATTGACTTGGAACTCTCGTGTCAAGATTGCTTTGGGGACAGCCCGTGCATTAGAGTATCTACATGAAGTTTGTGCACCATCAGTTGTTCACAGAAATATCAAGTCAGCCAATATCTTACTGGATGCTGAACTTAATCCTCATCTCTCTGATTGTGGATTGGCTAGCTTTATAACTAATCTAGATCAGGCATTAGATCAGCAGGCAGGATCTGGATACAGTGCCCCTGAGGTTACTATGTCTGGTCAATATACATTACAAAGTGACGTATATAGCTTTGGAGTGGTGATGTTGGAACTTCTAAGTGGTCTTACGCCGTTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCTACACCTCAGCTCCATGACATTGATGCCTTGACGAAAATGGTTGATCCTGCACTAAAAGGTCTTTACCCAGTTAAGTCTCTCTCAAGATTTGCAGACGTTGTGGCTCTCTGCGTCCAGCCCGAACCTGAATTTAGACCTCCCATGTCAGAGGTGGTGGAAGCGTTGGTGCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGTGATCATGGATCATCCTTTAGAACTGATGAACCTGATGCACAAGAGACATCTTAA 2970 45.76 MQCDADSASSHVWCGCFFKPEFVERYGDLLLVSLNINFGSPPIWKEDSAIPETTKKRGPEEEQVGGSGLGPTHMVGLGRGRPLSPLACVESFYLRSIFALSAPVPLGIRVQVACTTPVCSGSGWSSHLPRHPQIHCWCYVKVRRGLLPISKLCAFCHKTVCENAAEADPTPKLSWSATFASSPTIRPEFCSFVGLCICLSLLQIFQLIFYSLGAGYIRAGNPPRVTVSWNHLFPISTPSESTAEEERAQVTEREMVKKWSWGEALLLINICILGWRASFINGATDPGDVSALNAMYTSLNSPPILTLWSASGGDPCGQLWKGITCSGSRVTEISLSGLGLSGSLGYQLSSLTSLINLDVSINNLGPDIPYQLPQNMQKLNLGWNNFSGSIPYSISQMSLLISLNISHNQLRNQVNDMFWKLSSLSMLCPPQSFSNLTSMNSMFLQNNQFSGTIDVLATLPLQNLNVENNHFTGWVPERLKNINIQEGGNSWSFGLAPPPPPGTPPANQNYRYHKPGNNYSPLSSGAAGGDSRRSGISGGAIAGILISVLVVGAVLAYLFVKRRPKKSSTDIEKQKLGNQPSVSPASNVLQVFPKLLSTFPLCTFSFCQLVCSCLQHLESQGHIFCPRIGFSCFNQSKTPPIDRHKSFDDNDTLTIPVVKKTNVTPPISVKSYSIAELQMATGSFNGENLLGEGSLGRVYRAQFDDGKVLAVKKIDSAALPRELLEDFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSANILLDAELNPHLSDCGLASFITNLDQALDQQAGSGYSAPEVTMSGQYTLQSDVYSFGVVMLELLSGLTPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDEPDAQETS 989
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42005360 42014038 + Lag0016874.1 Lac12g2502 591099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2502 989 Gene3D Ribonuclease Inhibitor 424 492 IPR032675 -
Lac12g2502 989 PANTHER LEUCINE RICH REPEAT KINASE 2 287 500 IPR051420 -
Lac12g2502 989 MobiDBLite consensus disorder prediction 49 72 - -
Lac12g2502 989 MobiDBLite consensus disorder prediction 967 989 - -
Lac12g2502 989 CDD STKc_IRAK 690 959 - -
Lac12g2502 989 Gene3D Phosphorylase Kinase; domain 1 651 761 - -
Lac12g2502 989 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 285 502 - -
Lac12g2502 989 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 649 761 - -
Lac12g2502 989 SUPERFAMILY L domain-like 284 481 - -
Lac12g2502 989 MobiDBLite consensus disorder prediction 974 989 - -
Lac12g2502 989 MobiDBLite consensus disorder prediction 490 515 - -
Lac12g2502 989 SUPERFAMILY Protein kinase-like (PK-like) 664 956 IPR011009 -
Lac12g2502 989 Gene3D Transferase(Phosphotransferase) domain 1 763 979 - -
Lac12g2502 989 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 762 970 - -
Lac12g2502 989 ProSiteProfiles Protein kinase domain profile. 684 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2502 989 Gene3D Ribonuclease Inhibitor 287 423 IPR032675 -
Lac12g2502 989 Pfam Protein tyrosine and serine/threonine kinase 688 956 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g2502 989 Pfam Leucine rich repeat N-terminal domain 286 326 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1387 Lac-Chr10:12917447 Lac12g2502 Lac-Chr12:42005360 1.00E-144 dispersed
Lac10g2568 Lac-Chr10:39670069 Lac12g2502 Lac-Chr12:42005360 9.20E-85 dispersed
Lac10g2573 Lac-Chr10:39692027 Lac12g2502 Lac-Chr12:42005360 4.10E-108 dispersed
Lac12g0685 Lac-Chr12:7156009 Lac12g2502 Lac-Chr12:42005360 4.90E-103 dispersed
Lac12g2502 Lac-Chr12:42005360 Lac8g1144 Lac-Chr8:24508255 1.00E-153 dispersed
Lac13g0262 Lac-Chr13:1875549 Lac12g2502 Lac-Chr12:42005360 1.90E-20 dispersed
Lac12g2502 Lac-Chr12:42005360 Lac4g3072 Lac-Chr4:48844313 7.50E-210 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85833 PF07714 PK_Tyr_Ser-Thr 2.30E-40 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2502 - - - 0.0