Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2508 ATGGCACAGCCCGACGATTCCGCCGCCGCCGGAGTTCCCTTCTCCGGCAGCCCCAAAAAGAAGAACCTCTTCATCCTAGCCCTCCTCCTCGTCATCGGCACTGTCGCCGGCATCTCCTCCTCGGAAGACGACCACGTGACCGTCGTGAGAAGCACGTGCGCCGAGACGCTCTACCCGGAGCTGTGCCAGTCGACGATATCCGCCGCCGTGCGAGGTGGTTCGAAGAAGGTGTCGAGTTCGAAAGACGTAATCGAAGCGTCGGTGAACATCACGATCGGTGCAGTGAAGCGGAACTACAAAAGCATAAAGAAATTGGTTGCGACGAGGAAGAATCTGAGCAAGCGAGAGAAAATTGCTCTGGAGGATTGTCTGGAGAACGGCGAGGAGACGCTGAGAGAGCTGTATGAAGTGGTTGAAGATCTTAATGAGTATCCTAAGAAGAAGGCTCTGTCGCAGTACGCCGATGACCTCAAAACCTTGCTCAGTTCCGCCATTACTAATCAGGAGACATGTCTGGACGGATTCTCGCACGACAAAGCCGACAAGATCGTGCGAAAGTCATTAGAATCCGGCCAAATCCACGTCGAGAAACTCTGCAGCATCGCTTTAGCATTGATCAAGAATCTCACCGACACCGACATTGCCAATCGGAACAACAACCTCGTCAGAAAGCAGCTGACGGAGGACGACGGAATTCAGTGGCCGGATTGGCTGCCTGCCGGTGACCGGAGGCTTTTGCAGGCGTCGTCGGCGGCGACTCCGGACGCGGTGGTTGCCGCCGACGGGAGCGGAGATTTCACGACGGTGTCGGCGGCGGTAGCGGCGGCGCCGAATGGGAGTAGCCGGAGATATATAATAAGAATTAAGGCGGGGGTTTATAGAGAGAATGTGAATGTGGCGAGTGGCAAGAGGAATATAATGTTTTGGGGAGATGGAAGAACCACTACTATTATCACCGGAAATAGAAATGTCGTCGACGGCAGCACCACCTTCAACTCCGCCACCGTTGCGGCGGTGGGAGAAAGATTCTTAGCGAGGGACATCACGTTCCAGAACACCGCCGGTCCATCGAAGCACCAAGCGGTGGCGCTCCGCGTCGGCTCCGATTTCTCCGCCTTTTACCGCTGCGACATGCTCGCCTATCAAGACACTCTCTACGTCCACTCCAACCGCCAATTCTACGTCAGCTGCATCATCATCGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGCCGTCATCCAAGACTGCGACATCCACGCCCGCCGCCCCAATCCCGGCCAGAGAAACATGGTCACTGCACAGGGAAGAACCGACCCAAATCAGAACACCGGAATCGTGATCCAGAAGTGCCGAATCGGAACCACCTCCGATCTGCAGCCGGTGATCAGAAATTTCCCGACGTTTCTCGGCCGGCCGTGGCAGAGATATTCGAGGACGGTGGTTATGCAGACGAGTATTAGCAACGTGATTGATCCGGCGGGTTGGCATGTTTGGGATGGGAATTTTGCGCTCGATACTCTGTTTTATGCCGAGTATCAGAACAGTGGGCCTGGCGCCGATACGTCGAGGAGAGTGACGTGGAAGGGGTACAGGGTCCTTACCAGTGCGGCGGAAGCGCAGGAATTCACGGCCGGAAATTTCATCGGCGGCGGCAGCTGGCTGAGCTCCACCGGATTCCCGTTTTCACTTGGGCTGTAA 1701 56.14 MAQPDDSAAAGVPFSGSPKKKNLFILALLLVIGTVAGISSSEDDHVTVVRSTCAETLYPELCQSTISAAVRGGSKKVSSSKDVIEASVNITIGAVKRNYKSIKKLVATRKNLSKREKIALEDCLENGEETLRELYEVVEDLNEYPKKKALSQYADDLKTLLSSAITNQETCLDGFSHDKADKIVRKSLESGQIHVEKLCSIALALIKNLTDTDIANRNNNLVRKQLTEDDGIQWPDWLPAGDRRLLQASSAATPDAVVAADGSGDFTTVSAAVAAAPNGSSRRYIIRIKAGVYRENVNVASGKRNIMFWGDGRTTTIITGNRNVVDGSTTFNSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYRCDMLAYQDTLYVHSNRQFYVSCIIIGTVDFIFGNAAAVIQDCDIHARRPNPGQRNMVTAQGRTDPNQNTGIVIQKCRIGTTSDLQPVIRNFPTFLGRPWQRYSRTVVMQTSISNVIDPAGWHVWDGNFALDTLFYAEYQNSGPGADTSRRVTWKGYRVLTSAAEAQEFTAGNFIGGGSWLSSTGFPFSLGL 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42045189 42049878 + Lag0016880.1 Lac12g2508 591105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2508 566 ProSitePatterns Pectinesterase signature 1. 280 299 IPR018040 -
Lac12g2508 566 SUPERFAMILY Pectin lyase-like 249 565 IPR011050 -
Lac12g2508 566 FunFam Pectinesterase 45 210 - -
Lac12g2508 566 Pfam Pectinesterase 255 551 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac12g2508 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 210 IPR035513 -
Lac12g2508 566 CDD PMEI-like_3 51 210 - -
Lac12g2508 566 Gene3D - 249 566 IPR012334 -
Lac12g2508 566 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Lac12g2508 566 PANTHER PECTINESTERASE 25 557 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac12g2508 566 NCBIfam pectinesterase inhibitor domain 23 210 IPR006501 GO:0004857(InterPro)
Lac12g2508 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 211 IPR035513 -
Lac12g2508 566 FunFam Pectinesterase 249 566 - -
Lac12g2508 566 Pfam Plant invertase/pectin methylesterase inhibitor 48 205 IPR006501 GO:0004857(InterPro)
Lac12g2508 566 Coils Coil 124 144 - -
Lac12g2508 566 SMART PMEI_2 44 205 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2508 Lac-Chr12:42045189 Lac4g2484 Lac-Chr4:44164172 1.40E-131 dispersed
Lac12g2508 Lac-Chr12:42045189 Lac12g2509 Lac-Chr12:42052130 1.10E-101 tandem
Lac4g1968 Lac-Chr4:39158236 Lac12g2508 Lac-Chr12:42045189 3.20E-184 transposed
Lac12g2508 Lac-Chr12:42045189 Lac4g3068 Lac-Chr4:48810519 7.80E-220 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2508 K01051 - csv:101207996 912.138