Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2509 ATGGATTCCGTCAAGTCCTTCAAGGGCTACGGCAAGGTCGACGAGCTCGAGCAGCAAGCTTTCCGCCGGAAGACTCGCCGTCGATTTATCATACTTATTCTCTCTATCGTTCTTCTGATTGCTGTTGTCATCGGCGCCGTCGTCGGAGTCGTGATTCATAAACGGAACTCTTCGTCTTCTTCCGCCACGAGCTCGGCTCCTCCGACGGAGCTCACTCCGGCGGCTTCACTCAAAACTCTCTGCAGTGTGACTCAGTATCCGACTTCGTGCCAGTCCTCTCTCGGAAACTCCAACACCACCGATCCGGTGTTCCTCTTCAAGCTTTCTCTCCGAGTCGCCAGCGATTCGCTCTCTAAACTCGCCGATTACTCCTCCAAACTCAATTCCAGTGTCACCGATCCCAAACTCAGAGACGCAATCGGAATCTGCCGGAGTGTATTTGAAGACGCGATTGAGACGCTGAACGACACCGTTTCGTCCATGGAAGTAGATCGAAATGGTGAGAAGTTCTTGTCGCCGTCGCGGATTGAAGATCTGAAGACCTGGCTGACCACCACCATCACCGACCAAGAAACCTGCCTCGACGCCGTTCGAGATCTGGAAAACCAGACGGCGGTTCTCCAAGAATTGCAGACGGCAATGGCGAACTCGACCGAGTTCACTAGTAACAGTTTGGCGATTGTAACGAAAATCATAGGGCTGTTGGCGGATTTCAACATCCCAATCCATCGAAAGCTGATGGGGTTCCCGGAGTGGGTGAGCTCCGGCGACCGGCGGCTTCTGCAGGAGAACAATGTGACGGCGCATGTGACGGTGTCGAAGGATGGGAAAGGGGACTTCACGACGATCAATGACGCCGTTGCGGCGGTGCCAAAGAAAAGCAAAGAAAGATTCATCATATATGTGAAAGAAGGAATCTACGAAGAGAATGTGATTCTGGATAAGAGCAAGTGGAATGTTATGATGTACGGAGATGGCAGAACCAGAACCATTGTTTCCGGCAGCCTGAACTTCATCGACGGCACTCCCACCTTCTCCACCGCCACTTTTGCTGTGGCTGGCAGAGGCTTCATCGGCAAGGACATCGGCTTCGTCAACACGGCCGGCCCTCAAAAGCACCAGGCCGTCGCCTTCCGCTCTGGCTCCGACCTCTCCGTCATGTACGGATGCTCATTCGACGGCTATCAAGACACCCTCTACGCCCATTCCAACCGCCAATTCTACCGGGACTGCGACATCACCGGCACCATCGACTTCATCTTCGGCAACGCCGCCGTCGTCTTCCAGAACTGCAACATCCGCCCGAGGCAGCCACTTTCCAACCAATTCAACACCATCACAGCCCAAGGCAAAAAGGACATCAACCAGAACTCCGGCATTTCCATTCAGAAATGCACTTTCTCGGCCTTCAACGAGAGTCTCACCGCCCCTACTTACTTGGGGCGGCCATGGAAGGAGTTTTCGACCACCGTGATTATGCAGTCGGAGATCGGAGATTTCCTGCAGCCGGTCGGGTGGAAGGAATGGGTCAGCGGGCAGGACCCACCGAGCACTATATTTTACGGGGAGTATCGGAATAGTGGGCCTGGATCCAACGTGGAGAAGAGGGTTAAATGGGCCGGTTACAAGCCCAGTCTTACCGACGCCGAGGCCGGAAAGTTCACCGTCGGGACCTTCCTCAACGGCCAGGATTGGTTGCCGGGCACCAGTGTAAAATTTGATACGTCCTTGTGA 1734 54.27 MDSVKSFKGYGKVDELEQQAFRRKTRRRFIILILSIVLLIAVVIGAVVGVVIHKRNSSSSSATSSAPPTELTPAASLKTLCSVTQYPTSCQSSLGNSNTTDPVFLFKLSLRVASDSLSKLADYSSKLNSSVTDPKLRDAIGICRSVFEDAIETLNDTVSSMEVDRNGEKFLSPSRIEDLKTWLTTTITDQETCLDAVRDLENQTAVLQELQTAMANSTEFTSNSLAIVTKIIGLLADFNIPIHRKLMGFPEWVSSGDRRLLQENNVTAHVTVSKDGKGDFTTINDAVAAVPKKSKERFIIYVKEGIYEENVILDKSKWNVMMYGDGRTRTIVSGSLNFIDGTPTFSTATFAVAGRGFIGKDIGFVNTAGPQKHQAVAFRSGSDLSVMYGCSFDGYQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNIRPRQPLSNQFNTITAQGKKDINQNSGISIQKCTFSAFNESLTAPTYLGRPWKEFSTTVIMQSEIGDFLQPVGWKEWVSGQDPPSTIFYGEYRNSGPGSNVEKRVKWAGYKPSLTDAEAGKFTVGTFLNGQDWLPGTSVKFDTSL 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42052130 42055014 + Lag0016881.1 Lac12g2509 591106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2509 577 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Lac12g2509 577 Pfam Plant invertase/pectin methylesterase inhibitor 76 227 IPR006501 GO:0004857(InterPro)
Lac12g2509 577 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 232 IPR035513 -
Lac12g2509 577 SMART PMEI_2 72 227 IPR006501 GO:0004857(InterPro)
Lac12g2509 577 FunFam Pectinesterase 73 232 - -
Lac12g2509 577 SUPERFAMILY Pectin lyase-like 267 573 IPR011050 -
Lac12g2509 577 CDD PMEI-like_3 79 231 - -
Lac12g2509 577 NCBIfam pectinesterase inhibitor domain 57 230 IPR006501 GO:0004857(InterPro)
Lac12g2509 577 Pfam Pectinesterase 269 562 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac12g2509 577 Gene3D - 263 577 IPR012334 -
Lac12g2509 577 PANTHER PECTINESTERASE 29 567 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac12g2509 577 FunFam Pectinesterase 263 577 - -
Lac12g2509 577 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 231 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0057 Lac-Chr10:519194 Lac12g2509 Lac-Chr12:42052130 9.70E-26 dispersed
Lac10g1173 Lac-Chr10:9941960 Lac12g2509 Lac-Chr12:42052130 6.80E-131 dispersed
Lac12g2509 Lac-Chr12:42052130 Lac1g3230 Lac-Chr1:52275564 3.10E-115 dispersed
Lac12g2508 Lac-Chr12:42045189 Lac12g2509 Lac-Chr12:42052130 1.10E-101 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2509 - - - 0.0