Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2513 ATGATGCTTCACTCCGTTGGAGCTGCTAGACAAACTTGTAGTTTACTTGCTGTCACCTGCGGAAGTGTACCTAAAGTAAAATACGAGGAGGATGTTGCTGTGGATAAGTTGAAATATCCCTTTCCAGAATTAGTTTCTTCCGGACGATTGGAGGTTCGAGTTTTGTCAAATCCAAGCAAGGATGAATTTAGTAGAATTGTAGAATCATGTCAACCGAGCTTCGTCTACTTGCAAGGGGAACAACTTGAAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGTGGACTATTCAATACTGCATTACCAACCACCGTGTATTTAGAAATCCCAGATGGAGGCGAAATAGCAGAGGCTCTTCATTCTAAGGGAATTCCTTATGTCATGTTTTGGAACAACAGATTTTCAAGTTATGCTGCAGCTCATTTTCGTAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTTCACATGCTGCTTTTAGGCTTCATTGTGTGGGGAGCGATTATGCCCTTCCCGGGAATGCTGACGATATTAGGAGTGATCTAGAGCCTCAGCTTATTGGGGAACCGCTAAAGATTAACGTAGAACCTCCCGAGATAGATGCAGGTGAAGATGAAGATGGTTCTTTAGAAACCCTCCCTGTCTTAAGTATACATGATAATAATGTGACCGTGAGATTTCTTATCTGTGGAATGTCTTGCACACCGGATGCATACTTATTGAGATCATTGGAGGATGGCCTTAATGCCCTTTTGAACATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCGCCACCACCTCTTCAAGCAGGATCCTTTTCTCGTGGTGTTGTGACAATGCGATGTGATATAGTGACCTGTAGTTCAGCCCACATCTCAATATTGGTGTCCGGTAGTGCTCATACTTGTTTTGATGATCAGTTGTTGGAGAAACATATCAAACATGAGATTATTGAAAATAGCCAATTAGTTCATGCTATGCATGATTGTGAGGGCAACAAACATCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCTTGCGGGGCAACTGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTAGCACCTGATATGTCGTATCGGAGTTTAGTTGCACTTGGTATTGGGGGAGTTCAGGGTTTGCCTGTTGCTTCTTTTGAGAAAGAGGATGCTGAGCGGTTGCTCTTCTTCTATTCAAGGGATGAGAATGATAAACATTCAGATCAGTTGCTTGTAAGTGTATTGCCCAACTGGTTTAAACCACCTACTCCTAGTAGAAAGAGAGGGGAACCAAGCCAGGGAATAAGGAACCCTCTTTCACTCGACAGTCTTGCATTTGCAAATATTCCTTCCATTAGAAGAGTAGGTGGAGAGGAGCCTGCACCAATGAATGGGTTTAAGACACCCTTACTCCCAGCTAGGAAAAGATTAAAAGTAGCTACCATGAGGCCTATTCCACGTGTGCATAGGAATAAAATGACACCATTCTCTGGATTGGCCGAAGCAGATGGGAATAATGGAGGCCAACCCAAGGCTAGTTTGCCCGTCATTACCCCGTCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACAAAGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGCAGATCGTTCCCTTAAATCCACTTCCTTTAAAGAAACATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCTGAGGAGGAGTTCTTGAAGGATGTTATGGAATTTTTACTACTTAGAGGACATTCGCGACTTATTCCTCAAGGTGGACTTGAGGAGTTCCCAGATGCCATACTCAATGGGAAGCGTCTTGATCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTCGGCAATGGTATCAATTGGAAGGGGCAAATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGCCTTTTGTGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCCCATTTCGGGTGCGATCGGAGGCAGGGTCTCGGTGCATTTAAGGATTATGCCAAAACAGATGGGTTAGAGTATGTTTGTCCACACTGTAGCATTACAACTTACAAGAAGAAACCACACAGAGTAGCAAACGGGTCTCCGCAAGGAATGACGAATCCACGGATACCTTGA 2352 43.37 MMLHSVGAARQTCSLLAVTCGSVPKVKYEEDVAVDKLKYPFPELVSSGRLEVRVLSNPSKDEFSRIVESCQPSFVYLQGEQLENDEIGSLVWNGVDLSLEDLCGLFNTALPTTVYLEIPDGGEIAEALHSKGIPYVMFWNNRFSSYAAAHFRNALLSVVQSSSTHTWDAFQLSHAAFRLHCVGSDYALPGNADDIRSDLEPQLIGEPLKINVEPPEIDAGEDEDGSLETLPVLSIHDNNVTVRFLICGMSCTPDAYLLRSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISILVSGSAHTCFDDQLLEKHIKHEIIENSQLVHAMHDCEGNKHHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGVQGLPVASFEKEDAERLLFFYSRDENDKHSDQLLVSVLPNWFKPPTPSRKRGEPSQGIRNPLSLDSLAFANIPSIRRVGGEEPAPMNGFKTPLLPARKRLKVATMRPIPRVHRNKMTPFSGLAEADGNNGGQPKASLPVITPSKHVTVGSTSATQRKSFSSSSQSKQQIVPLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHRVANGSPQGMTNPRIP 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42082875 42087815 + Lag0016885.1 Lac12g2513 591110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2513 783 Gene3D - 593 696 IPR036431 GO:0003677(InterPro)
Lac12g2513 783 ProSiteProfiles ARID domain profile. 596 700 IPR001606 GO:0003677(InterPro)
Lac12g2513 783 CDD ARID 598 696 - -
Lac12g2513 783 SMART ARID_2 593 696 - -
Lac12g2513 783 MobiDBLite consensus disorder prediction 554 575 - -
Lac12g2513 783 CDD PHD_ARID4_like 706 757 - -
Lac12g2513 783 SUPERFAMILY ARID-like 596 711 IPR036431 GO:0003677(InterPro)
Lac12g2513 783 Pfam ARID/BRIGHT DNA binding domain 599 696 IPR001606 GO:0003677(InterPro)
Lac12g2513 783 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 778 IPR042293 -
Lac12g2513 783 SUPERFAMILY FYVE/PHD zinc finger 692 760 IPR011011 -
Lac12g2513 783 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 697 766 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2513 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2513 Lac-Chr12:42082875 Lac4g3061 Lac-Chr4:48754215 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac12g2048 . 19 385 ARID Transcription Factor Family AT1G04880 57.0 7.1e-107 385.2
Lac5g0024 . 209 479 ARID Transcription Factor Family AT1G20910 60.3 4.1e-90 329.3
Lac2g0048 . 141 384 ARID Transcription Factor Family AT1G20910 56.6 3.9e-77 286.2
Lac2g0113 . 16 350 ARID Transcription Factor Family AT1G76110 59.2 1.3e-105 380.6
Lac5g0024 . 188 509 ARID Transcription Factor Family AT1G76510 59.6 3.3e-109 392.9
Lac2g0048 . 126 414 ARID Transcription Factor Family AT1G76510 60.5 8.2e-100 361.7
Lac12g2513 . 2 772 ARID Transcription Factor Family AT3G43240 59.2 2.4e-264 909.1
Lac4g3061 . 5 776 ARID Transcription Factor Family AT3G43240 57.7 1.4e-261 899.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23118 PF01388 ARID 7.30E-14 CL0123 Lac TR