Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2513 ATGATGCTTCACTCCGTTGGAGCTGCTAGACAAACTTGTAGTTTACTTGCTGTCACCTGCGGAAGTGTACCTAAAGTAAAATACGAGGAGGATGTTGCTGTGGATAAGTTGAAATATCCCTTTCCAGAATTAGTTTCTTCCGGACGATTGGAGGTTCGAGTTTTGTCAAATCCAAGCAAGGATGAATTTAGTAGAATTGTAGAATCATGTCAACCGAGCTTCGTCTACTTGCAAGGGGAACAACTTGAAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGTGGACTATTCAATACTGCATTACCAACCACCGTGTATTTAGAAATCCCAGATGGAGGCGAAATAGCAGAGGCTCTTCATTCTAAGGGAATTCCTTATGTCATGTTTTGGAACAACAGATTTTCAAGTTATGCTGCAGCTCATTTTCGTAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTTCACATGCTGCTTTTAGGCTTCATTGTGTGGGGAGCGATTATGCCCTTCCCGGGAATGCTGACGATATTAGGAGTGATCTAGAGCCTCAGCTTATTGGGGAACCGCTAAAGATTAACGTAGAACCTCCCGAGATAGATGCAGGTGAAGATGAAGATGGTTCTTTAGAAACCCTCCCTGTCTTAAGTATACATGATAATAATGTGACCGTGAGATTTCTTATCTGTGGAATGTCTTGCACACCGGATGCATACTTATTGAGATCATTGGAGGATGGCCTTAATGCCCTTTTGAACATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCGCCACCACCTCTTCAAGCAGGATCCTTTTCTCGTGGTGTTGTGACAATGCGATGTGATATAGTGACCTGTAGTTCAGCCCACATCTCAATATTGGTGTCCGGTAGTGCTCATACTTGTTTTGATGATCAGTTGTTGGAGAAACATATCAAACATGAGATTATTGAAAATAGCCAATTAGTTCATGCTATGCATGATTGTGAGGGCAACAAACATCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCTTGCGGGGCAACTGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTAGCACCTGATATGTCGTATCGGAGTTTAGTTGCACTTGGTATTGGGGGAGTTCAGGGTTTGCCTGTTGCTTCTTTTGAGAAAGAGGATGCTGAGCGGTTGCTCTTCTTCTATTCAAGGGATGAGAATGATAAACATTCAGATCAGTTGCTTGTAAGTGTATTGCCCAACTGGTTTAAACCACCTACTCCTAGTAGAAAGAGAGGGGAACCAAGCCAGGGAATAAGGAACCCTCTTTCACTCGACAGTCTTGCATTTGCAAATATTCCTTCCATTAGAAGAGTAGGTGGAGAGGAGCCTGCACCAATGAATGGGTTTAAGACACCCTTACTCCCAGCTAGGAAAAGATTAAAAGTAGCTACCATGAGGCCTATTCCACGTGTGCATAGGAATAAAATGACACCATTCTCTGGATTGGCCGAAGCAGATGGGAATAATGGAGGCCAACCCAAGGCTAGTTTGCCCGTCATTACCCCGTCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACAAAGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGCAGATCGTTCCCTTAAATCCACTTCCTTTAAAGAAACATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCTGAGGAGGAGTTCTTGAAGGATGTTATGGAATTTTTACTACTTAGAGGACATTCGCGACTTATTCCTCAAGGTGGACTTGAGGAGTTCCCAGATGCCATACTCAATGGGAAGCGTCTTGATCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTCGGCAATGGTATCAATTGGAAGGGGCAAATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGCCTTTTGTGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCCCATTTCGGGTGCGATCGGAGGCAGGGTCTCGGTGCATTTAAGGATTATGCCAAAACAGATGGGTTAGAGTATGTTTGTCCACACTGTAGCATTACAACTTACAAGAAGAAACCACACAGAGTAGCAAACGGGTCTCCGCAAGGAATGACGAATCCACGGATACCTTGA 2352 43.37 MMLHSVGAARQTCSLLAVTCGSVPKVKYEEDVAVDKLKYPFPELVSSGRLEVRVLSNPSKDEFSRIVESCQPSFVYLQGEQLENDEIGSLVWNGVDLSLEDLCGLFNTALPTTVYLEIPDGGEIAEALHSKGIPYVMFWNNRFSSYAAAHFRNALLSVVQSSSTHTWDAFQLSHAAFRLHCVGSDYALPGNADDIRSDLEPQLIGEPLKINVEPPEIDAGEDEDGSLETLPVLSIHDNNVTVRFLICGMSCTPDAYLLRSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISILVSGSAHTCFDDQLLEKHIKHEIIENSQLVHAMHDCEGNKHHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGVQGLPVASFEKEDAERLLFFYSRDENDKHSDQLLVSVLPNWFKPPTPSRKRGEPSQGIRNPLSLDSLAFANIPSIRRVGGEEPAPMNGFKTPLLPARKRLKVATMRPIPRVHRNKMTPFSGLAEADGNNGGQPKASLPVITPSKHVTVGSTSATQRKSFSSSSQSKQQIVPLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHRVANGSPQGMTNPRIP 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42082875 42087815 + Lag0016885.1 Lac12g2513 591110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2513 783 Gene3D - 593 696 IPR036431 GO:0003677(InterPro)
Lac12g2513 783 ProSiteProfiles ARID domain profile. 596 700 IPR001606 GO:0003677(InterPro)
Lac12g2513 783 CDD ARID 598 696 - -
Lac12g2513 783 SMART ARID_2 593 696 - -
Lac12g2513 783 MobiDBLite consensus disorder prediction 554 575 - -
Lac12g2513 783 CDD PHD_ARID4_like 706 757 - -
Lac12g2513 783 SUPERFAMILY ARID-like 596 711 IPR036431 GO:0003677(InterPro)
Lac12g2513 783 Pfam ARID/BRIGHT DNA binding domain 599 696 IPR001606 GO:0003677(InterPro)
Lac12g2513 783 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 778 IPR042293 -
Lac12g2513 783 SUPERFAMILY FYVE/PHD zinc finger 692 760 IPR011011 -
Lac12g2513 783 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 697 766 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2513 Lac-Chr12:42082875 Lac4g3061 Lac-Chr4:48754215 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23118 PF01388 ARID 7.30E-14 CL0123 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2513 - - - 0.0