Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2533 ATGAGTCAGTTCCCACTTAGTGTGTTGTGGGCCCACGCAAGTACCCAAAAAGCCCGTAAGGTGTTTGGAGGCGATCCAAGGCTAGACCGAGTGGAATCGGGGTGGTCGGGAACAACAGAGACCGAACGGTGGCGGAAGGACTCGGCTCACGTGGGCGACCATATGGGTCGGGCCAAGGTTCGGTCCCTCCGACCTTGGGCCGATCTTTTGGCTCGTTTCGCCTCCGGGGTTCATTTTCCAGTTCTATTTCCAGACTCGTGTCCTTCTCCGGCTTTTGATTCTTCTTTGTTGATGGAGCCATCTCATGAAGTTTCAGAAACGCCGGAGCAGATTATACTACGCTGGGACTCCGCCGCGCCGGAGGAAGTTAAGGATAAGATGATTTTCGACTCCGACAGGGAAGAGATCGACCGATACTTGCAGGCCGTCGACGAAATCCAGAGGTCGTTGTCGTCGGCTTCCATATCGGACGATCAGAACAAAGTTGATTCCACTATGCAGATCGCCATGGCCAGGCTTGAGGATGAGTTCCGTCACATTTTGTCCAGTCACACCACTCCGATCGAGGTCGACTCGCTTACTGATCCGAGTCCCTCTTCTCGGTCCATGTCGACTAGTGCGAGTGGTGTATTCGAGGATGACAACGACGAGGAAGCGGATTTACCGGAAGTTCAGCTTGATTTAAGTGGCAGTCCGAGTTTTGGGTCGAGTGGACGATCGAGCTATCGGGCGACGAGCAGTATTCGTGAAATTGATCTGATACCTTCGGATGCGATCATCGATCTGCGAAGTATTGCTGAGCGGATGATATCGGCGGGGTACCTGCGCGAGTGCATCCAAGTCTATGGCAGTGTGCGAAAGTCCACCTTCGACTCCAGCTTCCGACGGCTCGGAATTGAGAAGTTGAGCATTGGAGATATCCAGAGGCTGGATTGGAACGAGCTGGAGACGAAGATCAGAAGGTGGATTAGAGCAGCAAAGGTTTCTATTAGGACTTTGTTTTCCAGCGAGAAGAAGCTCTGCGAGCAAATCTTTTATGGCATAGGGACCGCCATAGACGATGCTTGTTTCATGGAGACTGTAAAAGGCCCTGTGACTCAGTTGTTCAATTTCGCCGAAGCGATCAGTATAAGCCGCAGATCGCCGGAGAAGCTGTTCAAGATTCTAGACCTACATGATGCCTTAACGGATTTGATACCCGACATTGATGTGATATTCGAATCAAAATCCGCGGAATATATTCGGATTCAGGCGGCGGAGATATTGTCGCGGCTGGCGGAGGCCGTCAGAGGGACTTTATCGGAGTTTGAAAACGCCGTGCTGCGGGAGCCGTCGCTGCATCCGGTGCCCGGCGGGACGCTTCATCCGTTGACAAGGTATGTTATGAACTATGTGAGTCTGATTTCCGATTACAAAGTGACCTTAGACGAGCTCATCGTGTCCAAACCATCAACGGGCTCGAGGTACTCCGCCGACCCCACAACTCCAGATATGGACTTCGCCGAGCTAGAGGGCAAAACGCCATTAGCGCTCCATCTGATATGGAGCATCGTGATTCTGCAGTTCAATTTGGAGGGTAAGTCCAGGCACTACAGAGACCCTTCTCTAGCTCATCTCTTCATCATGAACAACGTTCATTACATCGTTCAGAAGATAAAAGGATCCCCAGAATTGCGAGAAATGATCGGAGACGTTTATCTGAAAAGGCTGACTGGGAAGTATCGACAGGCGGCGACAAACTACGAGAGAACAACGTGGGTGAATGTGCTGTATTGCCTGCGAAATGAAGGGTTGAATGTGGGCGGGAGCTTCTCTTCCGGCCCCTCAAAGAGCGCTATTAGAGAGAGATTCAAGACTTTCAACGCTATGTTTGAGGAGGTACACAGGACACAATCGGCATGGTTGATACCAGATTCTCAGCTGAGGGAGGAGCTTCGCATATCCATAACTGAGAAGTTGATCCCAGCTTACAGGTCGTTTCTTGGCCTACATGGCCACCACATAGAGAGTGGAAGGCACCCAGAAAATTACATTAAGTACTCGGTCGAGGAACTGGAAAATGCCATCTTGGATTTCTTTGAGGGTTGCTCAGTGACCCATAACTTGAGAAGGAGATCTCACTGA 2124 50.99 MSQFPLSVLWAHASTQKARKVFGGDPRLDRVESGWSGTTETERWRKDSAHVGDHMGRAKVRSLRPWADLLARFASGVHFPVLFPDSCPSPAFDSSLLMEPSHEVSETPEQIILRWDSAAPEEVKDKMIFDSDREEIDRYLQAVDEIQRSLSSASISDDQNKVDSTMQIAMARLEDEFRHILSSHTTPIEVDSLTDPSPSSRSMSTSASGVFEDDNDEEADLPEVQLDLSGSPSFGSSGRSSYRATSSIREIDLIPSDAIIDLRSIAERMISAGYLRECIQVYGSVRKSTFDSSFRRLGIEKLSIGDIQRLDWNELETKIRRWIRAAKVSIRTLFSSEKKLCEQIFYGIGTAIDDACFMETVKGPVTQLFNFAEAISISRRSPEKLFKILDLHDALTDLIPDIDVIFESKSAEYIRIQAAEILSRLAEAVRGTLSEFENAVLREPSLHPVPGGTLHPLTRYVMNYVSLISDYKVTLDELIVSKPSTGSRYSADPTTPDMDFAELEGKTPLALHLIWSIVILQFNLEGKSRHYRDPSLAHLFIMNNVHYIVQKIKGSPELREMIGDVYLKRLTGKYRQAATNYERTTWVNVLYCLRNEGLNVGGSFSSGPSKSAIRERFKTFNAMFEEVHRTQSAWLIPDSQLREELRISITEKLIPAYRSFLGLHGHHIESGRHPENYIKYSVEELENAILDFFEGCSVTHNLRRRSH 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42209252 42212774 + Lag0016905.1 Lac12g2533 591130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2533 707 Pfam Exo70 exocyst complex subunit C-terminal 321 691 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Lac12g2533 707 Pfam Exocyst complex component Exo70 N-terminal 109 182 - -
Lac12g2533 707 PANTHER EXOCYST COMPLEX PROTEIN EXO70 106 695 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(PANTHER)|GO:0006887(InterPro)
Lac12g2533 707 MobiDBLite consensus disorder prediction 188 216 - -
Lac12g2533 707 MobiDBLite consensus disorder prediction 188 210 - -
Lac12g2533 707 SUPERFAMILY Cullin repeat-like 104 694 IPR016159 -
Lac12g2533 707 Gene3D Exocyst complex component Exo70 231 703 - -
Lac12g2533 707 Gene3D Exocyst complex component Exo70 111 216 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2533 Lac-Chr12:42209252 Lac3g0086 Lac-Chr3:577593 1.90E-122 dispersed
Lac12g2533 Lac-Chr12:42209252 Lac10g0582 Lac-Chr10:4476452 7.00E-125 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2533 K07195 - csv:101204229 1123.23