Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2545 ATGGAGGAGGAGGGAGGTCCCTCCTCCCTCTTGATTTATTTTTTTTTAAAGAAAAGAAGAAAAATGGGTTGGGATAAAAGAGAGGAAGTAAGGAGAAGAAAAAAAAAATTACAGTCGCCGCCGGCCGGTGGCGGCGAGCGGTGGCCGGCTGCCGGCGCCGACGCCAGAGATGTGAAGAAGAAGATGGAGGGGTTGAGGGAAGAAGATGGAGAATACGCAGTCACCTCTGCTCTTGTTCTCCGCCTCCTCCGGCAGAAGAAACTACTCCACCTCCCTGCAGCTAGTAACGTAAGATTCAATATTCTTATCAAGAGCCCAGATCATGTGCTGACAGCAGCGTTGCTGTTTTTGAGCCTGATTACTCTGATTTCCCAAATTATGCAGTCCGTGGAGTCATCATCCTCTGCTGAGATTATAGCTATAGGGAGAGAGAGCTCTGTTAGTGATGATGATTTACACAATCTTAATGTTGATGAAACTTGTCATCTGGTGAATGCAGACCAACCGCAATGTCGGATATGCCTTGATACTGGAGGAGAAGATTTAATTGCTCCATGCCACTGCAAAGGCACTCAAAAGTATGTCCATAGATCATGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTTGTGTTACGTGCAAATGTCCCTCCTGATCGCTGGTGGTTAAGACTTAAGTTTCAGTTTCTTGTTGCTAGGGACCATGCTTTCATTTTCATCATTGTTCAGCTGATTGTGGCATTCTTGGGGGTGTTGGTGTACAAATTCTACGGGGAGGAACTAAGGGAAATGTTTGGTTACGAAGAACACCCATATGGGTTCTATGCCATGGCTGTCTTGGCTATCATCTTGGTTGGTTTACTCTATGGTTTCTTCATAGCGATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTTGCTAAGCAAGAACTGACAAAGGAATATATAGTCGAAGATCGAGAACATAACAAAAATGTTCCTGAACTGGACCCCAGTCATGTTATGGAGCTAAGGATGTTGGGCCTGTATTAA 1077 45.13 MEEEGGPSSLLIYFFLKKRRKMGWDKREEVRRRKKKLQSPPAGGGERWPAAGADARDVKKKMEGLREEDGEYAVTSALVLRLLRQKKLLHLPAASNVRFNILIKSPDHVLTAALLFLSLITLISQIMQSVESSSSAEIIAIGRESSVSDDDLHNLNVDETCHLVNADQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42323881 42331582 + Lag0016917.1 Lac12g2545 591142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2545 358 MobiDBLite consensus disorder prediction 23 54 - -
Lac12g2545 358 CDD RING_CH-C4HC3_MARCH 171 219 - -
Lac12g2545 358 Pfam RING-variant domain 171 218 IPR011016 GO:0008270(InterPro)
Lac12g2545 358 ProSiteProfiles Zinc finger RING-CH-type profile. 163 225 IPR011016 GO:0008270(InterPro)
Lac12g2545 358 SUPERFAMILY RING/U-box 166 222 - -
Lac12g2545 358 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 290 358 - -
Lac12g2545 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 223 IPR013083 -
Lac12g2545 358 SMART ringv_2 170 219 IPR011016 GO:0008270(InterPro)
Lac12g2545 358 MobiDBLite consensus disorder prediction 23 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2545 Lac-Chr12:42323881 Lac3g0845 Lac-Chr3:6780656 6.20E-37 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2545 - - - 0.0