Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2559 ATGCTAACGGGCGTGCGCGTGGCGGGGCTTATGCGCGCACCAGCCCCAACCATCAGCGCCGCTTTCCTCTTCCTCTTCCTCTCCTCATGCATAATGGTCGTCTTGTCGGCTTCTGACGCCGAAACTCTCCTTCAATTCAAGCGCTCTTTGACCTCCGCCGCGGCTCTCCACAACTGGGATCCCTCCATCCCTCCTTGCGACAACCACAAGGCCAATTGGGCGGGTGTGCTTTGTTTGAATGGCTATGTTAGGGGTCTACGGCTTGAGAATATGGGGCTTAAGGGCGAGGTTGATGTGAATCCCCTCGTTTCTTTGACTCATTTGCGCACCCTCAGCTTCATGAATAACACCTTGGTTGGCCCTTGGCCTCCTGTTATAAGCAAATTAGGCAGTCTACGGTCCGTTTATCTTTCCTATAACCATTTTTCAGGAGAAATTCCAGACGATGCCTTTACGGGTATGAAATTTTTGAAGAAAGTGTTTTTGACCAATAATGAATTCAACGGCCAAATTCCCTCATCTCTCGCTTCACTGTCTAGGCTTATGGAGTTGAGACTTGATGGAAACAAATTCAAAGGCCAAGTCCCCCACCTTGAAATGGATACTTTGAAGAAACTTAACGTTTCCAATAATGAATTGGAGGGCCCCATACCTAGTAGCTTAAGCCATATGGATCCTACCTGTTTTTCAGGTAACCGCAATCTGTGTGGGACTCCTCTTCCAGCATGCGAGAAATCCACGTTGTCATCCTCGGGGCTGCTGAAAATCGCGGTGATATTGATAGTTTTGGGGGTAACATTAGCAGTGATAGCTGCAATTTTCATCATATTGAATTTAAGGAAGCAGCCTGCGTTGCAACTAGGGAAGGGGAATGCAGGAGGCATTATTGAAGAGGAGAACAACAAGTACGTGAGTAAGCAAACAGCGGCGGCAGATGCATACAGATCCACGGAGTCGTCGGTGGCACAGGCTTCAAAGAGGGGGGCAGAACATGGCAAACTTTTGTTCGTGAGGGATGACAGGGAGAAGTTCGACTTACAGGACCTGCTCAGAGCTTCCGCCGAAATATTGGGGAGTGGTTCATTCGGCTCTTCCTACAAAGCAACTATACTTTGTAATGCGGTGGTGGTGAAGCGATACAAGCATATGAACAACGTAGGAAGAGAGGATTTTCATGAGTACATGAGAAGGCTAGGCAGGTTGACGCATCCAAATCTACTGCCGTTGGTTGCCTATTATTACAGGAAGGAAGAGAAGCTCTTGATTTCCGACTTTGTGGATAATGGGAGTTTGGCCAGCCATCTGCATGGGAACCACAACTTGGAGGAGCCAGGGCTGGATTGGGCCACCAGGTTGAAGATCATCAGAGGCATAGCAAGAGGGCTGTCTTACCTCTACACCTCCCTGCCCAACATAGTAGCGCCCCACGGCCATCTCAAATCTTCAAATGTGCTGCTAGACGACTCCCTGGACCCTCTGCTCACGGACTACGGTCTAATCCCAGTTGCCAACCTAGAGCACGGACAGACACTGATGATGGCCTACAAATCACCCGAGTATGCCCACCTGGGCCGCATAACCAAGAAGACCGACATCTGGAGCTTCGGAATTGTGATACTGGAGATGTTGACGGGAAGGTTCCCAGAGAACTACCTCACCCGGAATCATGACACCAAAGGAGACCTTGCCACTTGGGTCAACAACATGATCAAGGAAAAGAAGACGGCACAAGTCTTCGATGCAGAGCTGGGGAGAGCCAGGGAGAGCAACAAAGGCGAGTTGTTGAAGATGCTCAAGATTGGCTTAAGTTGCTGTGAGGAAGATGTGGACAGAAGGTTGGACTTGAATGAGGTAGTAACCCAAATTGAAGAGTTGAACGAGGCAGACTTGAGTGATGACGGAGATAACTTCTCCCCCACGGCTCCCCACACTCAAATTCCTGTTTGA 1947 49.46 MLTGVRVAGLMRAPAPTISAAFLFLFLSSCIMVVLSASDAETLLQFKRSLTSAAALHNWDPSIPPCDNHKANWAGVLCLNGYVRGLRLENMGLKGEVDVNPLVSLTHLRTLSFMNNTLVGPWPPVISKLGSLRSVYLSYNHFSGEIPDDAFTGMKFLKKVFLTNNEFNGQIPSSLASLSRLMELRLDGNKFKGQVPHLEMDTLKKLNVSNNELEGPIPSSLSHMDPTCFSGNRNLCGTPLPACEKSTLSSSGLLKIAVILIVLGVTLAVIAAIFIILNLRKQPALQLGKGNAGGIIEEENNKYVSKQTAAADAYRSTESSVAQASKRGAEHGKLLFVRDDREKFDLQDLLRASAEILGSGSFGSSYKATILCNAVVVKRYKHMNNVGREDFHEYMRRLGRLTHPNLLPLVAYYYRKEEKLLISDFVDNGSLASHLHGNHNLEEPGLDWATRLKIIRGIARGLSYLYTSLPNIVAPHGHLKSSNVLLDDSLDPLLTDYGLIPVANLEHGQTLMMAYKSPEYAHLGRITKKTDIWSFGIVILEMLTGRFPENYLTRNHDTKGDLATWVNNMIKEKKTAQVFDAELGRARESNKGELLKMLKIGLSCCEEDVDRRLDLNEVVTQIEELNEADLSDDGDNFSPTAPHTQIPV 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 42530776 42532956 - Lag0016931.1 Lac12g2559 591156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2559 648 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Lac12g2559 648 FunFam pollen receptor-like kinase 1 320 425 - -
Lac12g2559 648 Gene3D Ribonuclease Inhibitor 36 199 IPR032675 -
Lac12g2559 648 FunFam Pollen receptor-like kinase 1 426 636 - -
Lac12g2559 648 SUPERFAMILY L domain-like 37 235 - -
Lac12g2559 648 Pfam Leucine rich repeat N-terminal domain 37 78 IPR013210 -
Lac12g2559 648 Gene3D Ribonuclease Inhibitor 200 247 IPR032675 -
Lac12g2559 648 ProSiteProfiles Protein kinase domain profile. 351 625 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2559 648 MobiDBLite consensus disorder prediction 629 648 - -
Lac12g2559 648 Pfam Leucine Rich Repeat 203 224 IPR001611 GO:0005515(InterPro)
Lac12g2559 648 Pfam Leucine rich repeat 131 191 IPR001611 GO:0005515(InterPro)
Lac12g2559 648 SUPERFAMILY Protein kinase-like (PK-like) 355 625 IPR011009 -
Lac12g2559 648 Gene3D Phosphorylase Kinase; domain 1 316 425 - -
Lac12g2559 648 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 34 627 IPR046959 -
Lac12g2559 648 Pfam Protein tyrosine and serine/threonine kinase 355 621 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g2559 648 Gene3D Transferase(Phosphotransferase) domain 1 426 638 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2559 Lac-Chr12:42530776 Lac2g0700 Lac-Chr2:5273842 4.00E-111 dispersed
Lac6g1159 Lac-Chr6:11028215 Lac12g2559 Lac-Chr12:42530776 2.70E-27 dispersed
Lac12g2559 Lac-Chr12:42530776 Lac3g0397 Lac-Chr3:2989084 3.30E-129 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85834 PF07714 PK_Tyr_Ser-Thr 3.60E-28 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2559 K28077 - csv:101203276 1049.65