Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac13g0008 | ATGGTGATGATGAGTTGCTTTGCTTATGTGATCCTAGGAGCTGCTTCGATTGGATCTGCGAACCAGAGCCCCCGTAGATTTGAGAGAAGAAACCAGGGAGAGGAAGAATTACTTTCTTTTCTAGAAAGCGCAGGTTCCTCTCCCATATCGCCCACTCCCCTGGCCGTTATGGTGCCCCTAACTCTTATACAGGGCGCTGCTTTTAAACGAGCTGTCTGTTTAGATGGCACTCTACCTGGTTATCATTTTCATCCTGGCTTTGGATCGGGTGCAAACAGCTGGCTTATACATTTAGAGGGAGGTGGCTGGTGCAATACGATTAGGAGTTGTGTTTTTCGCAAAACCACTCGCCGTGGTTCATCCAAATACATGGAAAAACAATTACCCTTCACAGGAATATTGAGCAACAAGGCCGAGGAAAACCCTGATTTCTTCAATTGGAACAGAGTCAAGCTACGTTATTGTGATGGTGCATCTTTTAGCGGAGACGGTCAAAATGAGGTATATTTAAGAACTGAAAGCTTCCTGAAAGGACTGGCCACTAAAGCAAGTGTGAATAAAATTGCGATGCTTCTAGGAAGAACTTAA | 588 | 44.9 | MVMMSCFAYVILGAASIGSANQSPRRFERRNQGEEELLSFLESAGSSPISPTPLAVMVPLTLIQGAAFKRAVCLDGTLPGYHFHPGFGSGANSWLIHLEGGGWCNTIRSCVFRKTTRRGSSKYMEKQLPFTGILSNKAEENPDFFNWNRVKLRYCDGASFSGDGQNEVYLRTESFLKGLATKASVNKIAMLLGRT | 195 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 136284 | 138239 | + | Lag0039804.1 | Lac13g0008 | 591164 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac13g0008 | 195 | PANTHER | NOTUM-RELATED | 55 | 172 | IPR004963 | GO:0009505(PANTHER)|GO:0016787(InterPro)|GO:0052793(PANTHER)|GO:0071555(PANTHER) | |
| Lac13g0008 | 195 | Pfam | Pectinacetylesterase | 56 | 167 | IPR004963 | GO:0016787(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g0008 | Lac-Chr13:136284 | Lac3g3083 | Lac-Chr3:49273258 | 2.70E-55 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac13g0008 | K19882 | - | mtr:11442062 | 230.335 |