Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0010 ATGGGGTTCTTCATTCTAAATATGCCTCTCAAGGGCCTTGATAAGAACCGGAATAGAACCACAATGCATTACAATACAAAAGCACAACTTAATTTTCGAGGACAGCAGATATGGTTGACTGCAATGGAAGAGTTGATGTCCAAAGGAATGCAAAATGCCAGTCAGGCGTTGCTTTCTGGATGCTCGGCTGGGGGTCTGGCATCCATACTGCACTGTGATGAATTCCATGAATTATTTCCTAAAACTACTAAAGTAAAATGCTTAAGTGATGCAGGATTCTTTCTTGACTCAATTGACGTATCTGGTGGGCGCACCTTGAGGAATATGTTTGGAGGTGTAGTTACGTTACAGGAACTGCAGAAAAATCTTCCAAGAACTTGCATAAACCATTTGGATCCAACAATGTGCTTCTTTCCTCAGAATGTGATAGCCTATGTCAAGACCCCACTGTTTCTTCTCAATGCAGCATACGATGCATGGCAGGTTCAAGATAGTTTAGCTCCACCTTCTGCGGATCCTCGTGGATCTTGGAGAGAATGCAAATTGAATCATGCACATTGTAATTCATCTCAGATACAATTCCTTCAAGATTTTAGGAATGAGATGCCGAATGCAGTAAAAGATTTCTCAATATCCAATCAAAATGGTTTGTTCATAAATTCTTGTTTTGCTCATTGCCAGTCTGAGAGGCAAGATACATGGTTTGCAGATGATTCTCCTGTTATTGGAAACAAGGCAATTGCAGTTTCTGTCGGAGACTGGTACTTCGATAGAGCAAGCGTCAAAGCCATTGATTGTGCATACCCATGTGATGAAACCTGCCATAATCTGGGCACATGCACGGTAATGGAATACACTGAGGAGTTTCATCGATTAGGGACACGAACCAACCTTGGTGAAAACCAACAATATTTGGTGGCACGATATAAAGGAGGCCTACGCACGGATATTCAAGAAAGAATCGCATTGCAGCCCATTACTTATTTGAATGAAGCAATTACGGCGGTTGCAACAATCGAAGAACAAATTTCTAACCGGTATAAGCGGCAGTATTCAAGAACTGTGGGTGAACAGAGCAATACATTTTCCAGACCTACTACAACTGACAAAGGGCATCTATCCAATGAATGTCCCCAAAGAAAAACCCTTGCCATTGCTGATAATGTCGAATATCAAGAAGATAGTCACTACTCGAATAATGATGACCAAGTCGATTTCCTTAAACCAGATAAGGGAGAACTGTTGTCCTTGGTGATTCAAAGGCTCCTTTTGGCCCCAAAGACAGACCCAACATACCAACGACATGCTTTGTTCAAGACCCGTTGCACATTAATGGGAAAATCTGATGTTATTATTGACAGTGGAAGTACAGAAAATGTGGTTGCTAGCAAACTAGTTTCAGCCCTCAATCTGCCATTAACTCCACATCCAGCCCTTATAAGATTTGTTGGATAA 1455 41.51 MGFFILNMPLKGLDKNRNRTTMHYNTKAQLNFRGQQIWLTAMEELMSKGMQNASQALLSGCSAGGLASILHCDEFHELFPKTTKVKCLSDAGFFLDSIDVSGGRTLRNMFGGVVTLQELQKNLPRTCINHLDPTMCFFPQNVIAYVKTPLFLLNAAYDAWQVQDSLAPPSADPRGSWRECKLNHAHCNSSQIQFLQDFRNEMPNAVKDFSISNQNGLFINSCFAHCQSERQDTWFADDSPVIGNKAIAVSVGDWYFDRASVKAIDCAYPCDETCHNLGTCTVMEYTEEFHRLGTRTNLGENQQYLVARYKGGLRTDIQERIALQPITYLNEAITAVATIEEQISNRYKRQYSRTVGEQSNTFSRPTTTDKGHLSNECPQRKTLAIADNVEYQEDSHYSNNDDQVDFLKPDKGELLSLVIQRLLLAPKTDPTYQRHALFKTRCTLMGKSDVIIDSGSTENVVASKLVSALNLPLTPHPALIRFVG 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 142534 147358 + Lag0039806.1 Lac13g0010 591166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0010 484 MobiDBLite consensus disorder prediction 354 373 - -
Lac13g0010 484 PANTHER NOTUM-RELATED 26 277 IPR004963 GO:0009505(PANTHER)|GO:0016787(InterPro)|GO:0052793(PANTHER)|GO:0071555(PANTHER)
Lac13g0010 484 Pfam Pectinacetylesterase 23 259 IPR004963 GO:0016787(InterPro)
Lac13g0010 484 MobiDBLite consensus disorder prediction 354 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0010 Lac-Chr13:142534 Lac3g3083 Lac-Chr3:49273258 5.90E-115 dispersed
Lac13g0010 Lac-Chr13:142534 Lac11g0932 Lac-Chr11:10144511 3.30E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0010 K19882 - mdm:103444483 434.491