Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0026 ATGGAACTTACAGATATGCAGCAAAGCAACAAGCAGCACCAGCAGCAGCAGCAGCAGCAGCACCATAACAACAACAACAACAACACAGCCCCTCCCCATCTCCACCATCACCACCAAAACCAAAACCAAAACCAAAAACACTCTTCTTCTCAATCCCAATCTCCATCTCCATCTCCTCAGCAGCAGCAGCAGCAGCAGCAACAGCTTCATGTGGTCCCTTTCGATGGCAGATCATCAGCAGGAGCAGGAGCAGGAGCAGGTCCACCCTTCATGGGCTCCATCTCCACTCTTGTCTCCCTCCCTCATCCCTCTTCTTCTTCCTCTTCCAATTCTTCTTCCTCACCTTCTTCAGCCTCCGCCTCCGCCCCTCCTCCCCACCTCCTCGACGCCTCACTCGTCATCGCCACCAGATCCGACACCACCACCAACCCTTCTACCCGATCCTCCAACACCCTCAAGCGATCCACCAAAGATCGCCACACCAAGGTCGACGGTCGCGGCCGCCGCATCCGTATGCCCGCCACTTGCGCCGCTAGGGTTTTCCAGTTGACTCGAGAATTGGGCCACAAGTCCGACGGCGAGACCATCGAGTGGCTTCTCCAGCAAGCCGAGCCGGCTATCATCGCCGCCACTGGAACCGGTACCATCCCTGCCAATTTCTCCTCCTTGAACATCTCCATTCGTAGCAGCGGATCCACCCTCTCCGCCCCGCCCTCCAAACCCGCTCCTCATTCTTTTCATGGCGCTTTGGCTCTCGCTCACCATCCCCACGTCTACGAGGAAGGCTTCGCCCACGCAGCTTTGCTAGGATTTCACCACCAGCACCAGCAACAACAGCAGCACCAGCACCAGCACCAACTGAATCTAATGACGGCCGATCAAATAGCGGAAGCCCTCCCCAGCGGCGGCGGCGGAGGGGGAGGGGGAGGCGAGAGCGGTAGCGGGGGAGGAGACTCGACAGATAACTATATGAGAAAGCGGTTCAGAGAGGATCTGTTTAAAGAGGATACGCAATCTCAAGGGGAGAGCAGCGGCGGTGGATCTCCGAAAGCAATTAAGAGCGATCCACAAGTAGTGAAGCAGCAGTCAGCGTCTGCAGGCCAAGTCCGGGCGGCGACGGCGATGTGGGCGGTGGCACCAGGTCCGAGCAGTGGAGCGAGCAACACGTTTTGGATGTTGCCAGTGACAACAGGTTCGGGCGGGGGAAATGTGGGGAGTTGTGGGGCAATGGAAGCTCAGATGTGGCCATTCTCGACGAGTGGAAACACATTGCAAGCGCCATTACATTTCATGCCAAGATTCAACATCCCTGGTGGGGTGGAATTCCAAGGAGGAGCTGGAGGAGGAGGAAGAGCAAGCCAGTTGCAGCTGGGGTCCATGTTAATGCAGCAACAACCCACACAGCATCTTGGGCTGGGAGTATCGGAGTCCAATTTGGGAGTGTTGGCTGCTCTCAATGCGTATTCGAGAGGCGGCGGTTTGAATATCAATTCAGATCATCACCAGAATCATCCATTGGAGCATCATCATCCCAACGCACCTGAGCCTGATAGTGGGGACGAAGCTCCAAACACTTCCCAATGA 1584 56.38 MELTDMQQSNKQHQQQQQQQHHNNNNNNTAPPHLHHHHQNQNQNQKHSSSQSQSPSPSPQQQQQQQQQLHVVPFDGRSSAGAGAGAGPPFMGSISTLVSLPHPSSSSSSNSSSSPSSASASAPPPHLLDASLVIATRSDTTTNPSTRSSNTLKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKPAPHSFHGALALAHHPHVYEEGFAHAALLGFHHQHQQQQQHQHQHQLNLMTADQIAEALPSGGGGGGGGGESGSGGGDSTDNYMRKRFREDLFKEDTQSQGESSGGGSPKAIKSDPQVVKQQSASAGQVRAATAMWAVAPGPSSGASNTFWMLPVTTGSGGGNVGSCGAMEAQMWPFSTSGNTLQAPLHFMPRFNIPGGVEFQGGAGGGGRASQLQLGSMLMQQQPTQHLGLGVSESNLGVLAALNAYSRGGGLNINSDHHQNHPLEHHHPNAPEPDSGDEAPNTSQ 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 222938 224521 - Lag0039822.1 Lac13g0026 591182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0026 527 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 107 495 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lac13g0026 527 MobiDBLite consensus disorder prediction 335 365 - -
Lac13g0026 527 MobiDBLite consensus disorder prediction 297 323 - -
Lac13g0026 527 ProSiteProfiles TCP domain profile. 156 210 IPR017887 -
Lac13g0026 527 MobiDBLite consensus disorder prediction 152 169 - -
Lac13g0026 527 MobiDBLite consensus disorder prediction 97 121 - -
Lac13g0026 527 MobiDBLite consensus disorder prediction 494 527 - -
Lac13g0026 527 MobiDBLite consensus disorder prediction 134 151 - -
Lac13g0026 527 MobiDBLite consensus disorder prediction 1 73 - -
Lac13g0026 527 MobiDBLite consensus disorder prediction 1 169 - -
Lac13g0026 527 MobiDBLite consensus disorder prediction 501 516 - -
Lac13g0026 527 Pfam TCP family transcription factor 155 285 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0060 Lac-Chr10:531156 Lac13g0026 Lac-Chr13:222938 1.80E-34 dispersed
Lac13g0026 Lac-Chr13:222938 Lac3g0623 Lac-Chr3:4835985 1.60E-36 dispersed
Lac13g0026 Lac-Chr13:222938 Lac13g0309 Lac-Chr13:2216427 4.10E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23121 PF03634 TCP 3.00E-39 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0026 - - - 0.0