Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0026 ATGGAACTTACAGATATGCAGCAAAGCAACAAGCAGCACCAGCAGCAGCAGCAGCAGCAGCACCATAACAACAACAACAACAACACAGCCCCTCCCCATCTCCACCATCACCACCAAAACCAAAACCAAAACCAAAAACACTCTTCTTCTCAATCCCAATCTCCATCTCCATCTCCTCAGCAGCAGCAGCAGCAGCAGCAACAGCTTCATGTGGTCCCTTTCGATGGCAGATCATCAGCAGGAGCAGGAGCAGGAGCAGGTCCACCCTTCATGGGCTCCATCTCCACTCTTGTCTCCCTCCCTCATCCCTCTTCTTCTTCCTCTTCCAATTCTTCTTCCTCACCTTCTTCAGCCTCCGCCTCCGCCCCTCCTCCCCACCTCCTCGACGCCTCACTCGTCATCGCCACCAGATCCGACACCACCACCAACCCTTCTACCCGATCCTCCAACACCCTCAAGCGATCCACCAAAGATCGCCACACCAAGGTCGACGGTCGCGGCCGCCGCATCCGTATGCCCGCCACTTGCGCCGCTAGGGTTTTCCAGTTGACTCGAGAATTGGGCCACAAGTCCGACGGCGAGACCATCGAGTGGCTTCTCCAGCAAGCCGAGCCGGCTATCATCGCCGCCACTGGAACCGGTACCATCCCTGCCAATTTCTCCTCCTTGAACATCTCCATTCGTAGCAGCGGATCCACCCTCTCCGCCCCGCCCTCCAAACCCGCTCCTCATTCTTTTCATGGCGCTTTGGCTCTCGCTCACCATCCCCACGTCTACGAGGAAGGCTTCGCCCACGCAGCTTTGCTAGGATTTCACCACCAGCACCAGCAACAACAGCAGCACCAGCACCAGCACCAACTGAATCTAATGACGGCCGATCAAATAGCGGAAGCCCTCCCCAGCGGCGGCGGCGGAGGGGGAGGGGGAGGCGAGAGCGGTAGCGGGGGAGGAGACTCGACAGATAACTATATGAGAAAGCGGTTCAGAGAGGATCTGTTTAAAGAGGATACGCAATCTCAAGGGGAGAGCAGCGGCGGTGGATCTCCGAAAGCAATTAAGAGCGATCCACAAGTAGTGAAGCAGCAGTCAGCGTCTGCAGGCCAAGTCCGGGCGGCGACGGCGATGTGGGCGGTGGCACCAGGTCCGAGCAGTGGAGCGAGCAACACGTTTTGGATGTTGCCAGTGACAACAGGTTCGGGCGGGGGAAATGTGGGGAGTTGTGGGGCAATGGAAGCTCAGATGTGGCCATTCTCGACGAGTGGAAACACATTGCAAGCGCCATTACATTTCATGCCAAGATTCAACATCCCTGGTGGGGTGGAATTCCAAGGAGGAGCTGGAGGAGGAGGAAGAGCAAGCCAGTTGCAGCTGGGGTCCATGTTAATGCAGCAACAACCCACACAGCATCTTGGGCTGGGAGTATCGGAGTCCAATTTGGGAGTGTTGGCTGCTCTCAATGCGTATTCGAGAGGCGGCGGTTTGAATATCAATTCAGATCATCACCAGAATCATCCATTGGAGCATCATCATCCCAACGCACCTGAGCCTGATAGTGGGGACGAAGCTCCAAACACTTCCCAATGA 1584 56.38 MELTDMQQSNKQHQQQQQQQHHNNNNNNTAPPHLHHHHQNQNQNQKHSSSQSQSPSPSPQQQQQQQQQLHVVPFDGRSSAGAGAGAGPPFMGSISTLVSLPHPSSSSSSNSSSSPSSASASAPPPHLLDASLVIATRSDTTTNPSTRSSNTLKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKPAPHSFHGALALAHHPHVYEEGFAHAALLGFHHQHQQQQQHQHQHQLNLMTADQIAEALPSGGGGGGGGGESGSGGGDSTDNYMRKRFREDLFKEDTQSQGESSGGGSPKAIKSDPQVVKQQSASAGQVRAATAMWAVAPGPSSGASNTFWMLPVTTGSGGGNVGSCGAMEAQMWPFSTSGNTLQAPLHFMPRFNIPGGVEFQGGAGGGGRASQLQLGSMLMQQQPTQHLGLGVSESNLGVLAALNAYSRGGGLNINSDHHQNHPLEHHHPNAPEPDSGDEAPNTSQ 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 222938 224521 - Lag0039822.1 Lac13g0026 591182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0026 527 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 107 495 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lac13g0026 527 MobiDBLite consensus disorder prediction 335 365 - -
Lac13g0026 527 MobiDBLite consensus disorder prediction 297 323 - -
Lac13g0026 527 ProSiteProfiles TCP domain profile. 156 210 IPR017887 -
Lac13g0026 527 MobiDBLite consensus disorder prediction 152 169 - -
Lac13g0026 527 MobiDBLite consensus disorder prediction 97 121 - -
Lac13g0026 527 MobiDBLite consensus disorder prediction 494 527 - -
Lac13g0026 527 MobiDBLite consensus disorder prediction 134 151 - -
Lac13g0026 527 MobiDBLite consensus disorder prediction 1 73 - -
Lac13g0026 527 MobiDBLite consensus disorder prediction 1 169 - -
Lac13g0026 527 MobiDBLite consensus disorder prediction 501 516 - -
Lac13g0026 527 Pfam TCP family transcription factor 155 285 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0026 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0060 Lac-Chr10:531156 Lac13g0026 Lac-Chr13:222938 1.80E-34 dispersed
Lac13g0026 Lac-Chr13:222938 Lac3g0623 Lac-Chr3:4835985 1.60E-36 dispersed
Lac13g0026 Lac-Chr13:222938 Lac13g0309 Lac-Chr13:2216427 4.10E-37 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g2023 . 40 264 TCP Transcription Factor Family AT5G23280 62.5 3.8e-65 245.7
Lac13g0918 . 36 260 TCP Transcription Factor Family AT5G23280 58.5 6.9e-59 224.9
Lac10g2715 . 40 210 TCP Transcription Factor Family AT5G23280 65.5 3.1e-51 199.5
Lac8g2693 . 40 210 TCP Transcription Factor Family AT5G23280 66.1 9.0e-51 198.0
Lac12g1849 . 53 342 TCP Transcription Factor Family AT2G45680 54.1 3.2e-70 263.1
Lac13g0309 . 67 167 TCP Transcription Factor Family AT3G47620 88.3 2.3e-42 171.0
Lac13g0026 . 155 237 TCP Transcription Factor Family AT3G47620 90.4 1.9e-36 151.4
Lac10g0060 . 59 160 TCP Transcription Factor Family AT3G47620 72.5 4.2e-36 150.2
Lac8g0084 . 1 313 TCP Transcription Factor Family AT3G27010 56.9 5.4e-61 232.3
Lac4g2142 . 26 251 TCP Transcription Factor Family AT3G27010 53.7 9.9e-55 211.5
Lac8g2023 . 1 263 TCP Transcription Factor Family AT5G08330 58.4 3.8e-67 252.3
Lac13g0918 . 8 258 TCP Transcription Factor Family AT5G08330 54.8 3.5e-60 229.2
Lac10g2715 . 1 214 TCP Transcription Factor Family AT5G08330 56.4 1.2e-52 204.1
Lac8g2693 . 1 214 TCP Transcription Factor Family AT5G08330 58.9 4.6e-52 202.2
Lac4g0252 . 33 149 TCP Transcription Factor Family AT3G02150 66.1 2.8e-37 153.7
Lac12g0797 . 6 168 TCP Transcription Factor Family AT2G31070 53.6 5.1e-39 159.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010392 1 0 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23121 PF03634 TCP 3.00E-39 No_clan Lac TF