Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac13g0026 | ATGGAACTTACAGATATGCAGCAAAGCAACAAGCAGCACCAGCAGCAGCAGCAGCAGCAGCACCATAACAACAACAACAACAACACAGCCCCTCCCCATCTCCACCATCACCACCAAAACCAAAACCAAAACCAAAAACACTCTTCTTCTCAATCCCAATCTCCATCTCCATCTCCTCAGCAGCAGCAGCAGCAGCAGCAACAGCTTCATGTGGTCCCTTTCGATGGCAGATCATCAGCAGGAGCAGGAGCAGGAGCAGGTCCACCCTTCATGGGCTCCATCTCCACTCTTGTCTCCCTCCCTCATCCCTCTTCTTCTTCCTCTTCCAATTCTTCTTCCTCACCTTCTTCAGCCTCCGCCTCCGCCCCTCCTCCCCACCTCCTCGACGCCTCACTCGTCATCGCCACCAGATCCGACACCACCACCAACCCTTCTACCCGATCCTCCAACACCCTCAAGCGATCCACCAAAGATCGCCACACCAAGGTCGACGGTCGCGGCCGCCGCATCCGTATGCCCGCCACTTGCGCCGCTAGGGTTTTCCAGTTGACTCGAGAATTGGGCCACAAGTCCGACGGCGAGACCATCGAGTGGCTTCTCCAGCAAGCCGAGCCGGCTATCATCGCCGCCACTGGAACCGGTACCATCCCTGCCAATTTCTCCTCCTTGAACATCTCCATTCGTAGCAGCGGATCCACCCTCTCCGCCCCGCCCTCCAAACCCGCTCCTCATTCTTTTCATGGCGCTTTGGCTCTCGCTCACCATCCCCACGTCTACGAGGAAGGCTTCGCCCACGCAGCTTTGCTAGGATTTCACCACCAGCACCAGCAACAACAGCAGCACCAGCACCAGCACCAACTGAATCTAATGACGGCCGATCAAATAGCGGAAGCCCTCCCCAGCGGCGGCGGCGGAGGGGGAGGGGGAGGCGAGAGCGGTAGCGGGGGAGGAGACTCGACAGATAACTATATGAGAAAGCGGTTCAGAGAGGATCTGTTTAAAGAGGATACGCAATCTCAAGGGGAGAGCAGCGGCGGTGGATCTCCGAAAGCAATTAAGAGCGATCCACAAGTAGTGAAGCAGCAGTCAGCGTCTGCAGGCCAAGTCCGGGCGGCGACGGCGATGTGGGCGGTGGCACCAGGTCCGAGCAGTGGAGCGAGCAACACGTTTTGGATGTTGCCAGTGACAACAGGTTCGGGCGGGGGAAATGTGGGGAGTTGTGGGGCAATGGAAGCTCAGATGTGGCCATTCTCGACGAGTGGAAACACATTGCAAGCGCCATTACATTTCATGCCAAGATTCAACATCCCTGGTGGGGTGGAATTCCAAGGAGGAGCTGGAGGAGGAGGAAGAGCAAGCCAGTTGCAGCTGGGGTCCATGTTAATGCAGCAACAACCCACACAGCATCTTGGGCTGGGAGTATCGGAGTCCAATTTGGGAGTGTTGGCTGCTCTCAATGCGTATTCGAGAGGCGGCGGTTTGAATATCAATTCAGATCATCACCAGAATCATCCATTGGAGCATCATCATCCCAACGCACCTGAGCCTGATAGTGGGGACGAAGCTCCAAACACTTCCCAATGA | 1584 | 56.38 | MELTDMQQSNKQHQQQQQQQHHNNNNNNTAPPHLHHHHQNQNQNQKHSSSQSQSPSPSPQQQQQQQQQLHVVPFDGRSSAGAGAGAGPPFMGSISTLVSLPHPSSSSSSNSSSSPSSASASAPPPHLLDASLVIATRSDTTTNPSTRSSNTLKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKPAPHSFHGALALAHHPHVYEEGFAHAALLGFHHQHQQQQQHQHQHQLNLMTADQIAEALPSGGGGGGGGGESGSGGGDSTDNYMRKRFREDLFKEDTQSQGESSGGGSPKAIKSDPQVVKQQSASAGQVRAATAMWAVAPGPSSGASNTFWMLPVTTGSGGGNVGSCGAMEAQMWPFSTSGNTLQAPLHFMPRFNIPGGVEFQGGAGGGGRASQLQLGSMLMQQQPTQHLGLGVSESNLGVLAALNAYSRGGGLNINSDHHQNHPLEHHHPNAPEPDSGDEAPNTSQ | 527 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 222938 | 224521 | - | Lag0039822.1 | Lac13g0026 | 591182 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac13g0026 | 527 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 107 | 495 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Lac13g0026 | 527 | MobiDBLite | consensus disorder prediction | 335 | 365 | - | - | |
Lac13g0026 | 527 | MobiDBLite | consensus disorder prediction | 297 | 323 | - | - | |
Lac13g0026 | 527 | ProSiteProfiles | TCP domain profile. | 156 | 210 | IPR017887 | - | |
Lac13g0026 | 527 | MobiDBLite | consensus disorder prediction | 152 | 169 | - | - | |
Lac13g0026 | 527 | MobiDBLite | consensus disorder prediction | 97 | 121 | - | - | |
Lac13g0026 | 527 | MobiDBLite | consensus disorder prediction | 494 | 527 | - | - | |
Lac13g0026 | 527 | MobiDBLite | consensus disorder prediction | 134 | 151 | - | - | |
Lac13g0026 | 527 | MobiDBLite | consensus disorder prediction | 1 | 73 | - | - | |
Lac13g0026 | 527 | MobiDBLite | consensus disorder prediction | 1 | 169 | - | - | |
Lac13g0026 | 527 | MobiDBLite | consensus disorder prediction | 501 | 516 | - | - | |
Lac13g0026 | 527 | Pfam | TCP family transcription factor | 155 | 285 | IPR017887 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0060 | Lac-Chr10:531156 | Lac13g0026 | Lac-Chr13:222938 | 1.80E-34 | dispersed | |
Lac13g0026 | Lac-Chr13:222938 | Lac3g0623 | Lac-Chr3:4835985 | 1.60E-36 | dispersed | |
Lac13g0026 | Lac-Chr13:222938 | Lac13g0309 | Lac-Chr13:2216427 | 4.10E-37 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23121 | PF03634 | TCP | 3.00E-39 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac13g0026 | - | - | - | 0.0 |