Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0028 ATGCTTAAGTCAGCAAGCAGAAACGGTAGGGAGTGGAAAAGCAACCCCGGGGCAGATGGAAGCAGTGGGGACCTAACGGCACCAGACGGGCTCGGCCCGCGCGAGCGGGCCGAGGGTCGGCCTCGGCCCATGGCCGAGGCCGACCATGTGCTCGGGCCAAAAACCCGACCCCTTCGGTCTTGGCCCGTCCCACTTACCGGTTTTGCTCCTTGGTCCATCTCTCAGCCCGATTTCTCCTCGGTTGCCCTCGCGACCCATTGTGAAGAACAAGACTCCTCCCGTCAAATGGATCAAAGAATGGGTCCCCAAGATGTTGTTGCAACTGGAGGAAAGTGCTTTCTTTTGAAATGGGTTACAGAGGATGCATTGAAGGCATTGAAGGAGAAGGCAAAACAATCAGAGGCACCAGAACCTGAACCAGAACCCACAACTGAAGTGCTTTTCCTTTGTAGCTACGAGGGCTGTGGAAAAACATTTATTGATGCCGGTGCTTTGAGGAAGCATTCTCACATCCATGGGGAGAGGCAATATGTTTGTCACTACGAGGGCTGTGGAAAGAAATTTTTGGATAGTTCGAAGTTGAAAAGACACTTTCTTATTCATACTGGTGAAAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCCCTGGATTTCAACTTGAGATCGCATATGAAAACGCATTCACAAGAAAACTATCATATTTGTCCATACCCTGATTGTGGAAAGAGATTTGCCCACGAGTACAAATTGAAGAACCACATTACATCTCACCATGAAAAGAATGTGACAGCTGAAGTAGTCAAATATACACCACCTTCTGAGAAGCAAACTAAGGTTTCTAAACCTTCTGGAGGAGCTTATGCTTCTGCGTCATCAGATCGCCCATATGCTTGCCCCTATGAAGGGTGTGAAAAGGCGTACATCCATGAATACAAGCTTAAACTCCATTTGAGAAGAGAGCATCCTGGACATCTGGTAGAAGACAATGGCAATGCTCCACATAATGGGGAAAATGAGATAGAAGCCAGTGATCATGATGGCTATAGCGGAAAACGGGTAAATATGAAAAACCAGAAACAGAACAAGCCTAAACCAAACTTGAAGTTACCGCCTTCAAAAATATCACAGCGAAAAGGCACAACTCCATCTCCTGCCCCAATGAGTGCAGTTAAAAAATCATGGCCGGTTAAAGAAGAAACCTACGAGGAAGAAGATAGTGAAGAAACGGAGGAGGACCGTGAGAATGTGGAGGAGGGTTGGAGATATGCTGAAAACGAAGATGATGATGAGGAAACAGAGTATGAAGATTAA 1323 46.79 MLKSASRNGREWKSNPGADGSSGDLTAPDGLGPRERAEGRPRPMAEADHVLGPKTRPLRSWPVPLTGFAPWSISQPDFSSVALATHCEEQDSSRQMDQRMGPQDVVATGGKCFLLKWVTEDALKALKEKAKQSEAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRFAHEYKLKNHITSHHEKNVTAEVVKYTPPSEKQTKVSKPSGGAYASASSDRPYACPYEGCEKAYIHEYKLKLHLRREHPGHLVEDNGNAPHNGENEIEASDHDGYSGKRVNMKNQKQNKPKPNLKLPPSKISQRKGTTPSPAPMSAVKKSWPVKEETYEEEDSEETEEDRENVEEGWRYAENEDDDEETEYED 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 233770 238999 + Lag0039824.1 Lac13g0028 591184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0028 440 FunFam zinc finger transcription factor YY1 148 173 - -
Lac13g0028 440 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 266 IPR013087 -
Lac13g0028 440 FunFam Putative zinc finger protein 143 174 204 - -
Lac13g0028 440 ProSiteProfiles Zinc finger C2H2 type domain profile. 207 236 IPR013087 -
Lac13g0028 440 ProSitePatterns Zinc finger C2H2 type domain signature. 179 201 IPR013087 -
Lac13g0028 440 MobiDBLite consensus disorder prediction 31 53 - -
Lac13g0028 440 MobiDBLite consensus disorder prediction 277 291 - -
Lac13g0028 440 MobiDBLite consensus disorder prediction 328 440 - -
Lac13g0028 440 SUPERFAMILY beta-beta-alpha zinc fingers 295 323 IPR036236 -
Lac13g0028 440 MobiDBLite consensus disorder prediction 425 440 - -
Lac13g0028 440 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 327 IPR013087 -
Lac13g0028 440 MobiDBLite consensus disorder prediction 1 59 - -
Lac13g0028 440 Gene3D Classic Zinc Finger 174 204 - -
Lac13g0028 440 ProSitePatterns Zinc finger C2H2 type domain signature. 239 262 IPR013087 -
Lac13g0028 440 ProSitePatterns Zinc finger C2H2 type domain signature. 209 231 IPR013087 -
Lac13g0028 440 ProSiteProfiles Zinc finger C2H2 type domain profile. 177 206 IPR013087 -
Lac13g0028 440 Gene3D Classic Zinc Finger 233 262 - -
Lac13g0028 440 MobiDBLite consensus disorder prediction 273 298 - -
Lac13g0028 440 FunFam zinc finger transcription factor YY1 234 265 - -
Lac13g0028 440 SMART c2h2final6 237 261 IPR013087 -
Lac13g0028 440 SMART c2h2final6 300 325 IPR013087 -
Lac13g0028 440 SMART c2h2final6 177 201 IPR013087 -
Lac13g0028 440 SMART c2h2final6 207 231 IPR013087 -
Lac13g0028 440 SMART c2h2final6 148 172 IPR013087 -
Lac13g0028 440 Gene3D Classic Zinc Finger 148 173 - -
Lac13g0028 440 Gene3D Classic Zinc Finger 205 232 - -
Lac13g0028 440 ProSitePatterns Zinc finger C2H2 type domain signature. 150 172 IPR013087 -
Lac13g0028 440 MobiDBLite consensus disorder prediction 377 391 - -
Lac13g0028 440 FunFam Zinc finger protein 410 205 232 - -
Lac13g0028 440 Gene3D Classic Zinc Finger 272 339 - -
Lac13g0028 440 Pfam Zinc finger, C2H2 type 150 172 IPR013087 -
Lac13g0028 440 Pfam Zinc finger, C2H2 type 237 261 IPR013087 -
Lac13g0028 440 Pfam Zinc finger, C2H2 type 207 231 IPR013087 -
Lac13g0028 440 SUPERFAMILY beta-beta-alpha zinc fingers 151 201 IPR036236 -
Lac13g0028 440 MobiDBLite consensus disorder prediction 404 418 - -
Lac13g0028 440 SUPERFAMILY beta-beta-alpha zinc fingers 188 240 IPR036236 -
Lac13g0028 440 ProSitePatterns Zinc finger C2H2 type domain signature. 302 325 IPR013087 -
Lac13g0028 440 FunFam Zinc finger transcription factor YY1 275 342 - -
Lac13g0028 440 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 177 IPR013087 -
Lac13g0028 440 SUPERFAMILY beta-beta-alpha zinc fingers 231 264 IPR036236 -
Lac13g0028 440 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 112 404 - GO:0000790(PANTHER)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005667(PANTHER)|GO:0006357(PANTHER)|GO:0031519(PANTHER)
Lac13g0028 440 MobiDBLite consensus disorder prediction 342 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0028 Lac-Chr13:233770 Lac5g0138 Lac-Chr5:1152365 1.40E-19 dispersed
Lac13g0028 Lac-Chr13:233770 Lac4g1355 Lac-Chr4:31732091 1.10E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23122 PF00096 zf-C2H2 0.0061 CL0361 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0028 - - - 0.0