Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0042 ATGCCTGCAGCAAACAACAACCCCGACATGGCTACTTGCATTCGAGATTCGGTAGAAGATGAAGAACACATTTTCCGCAGCCAACTTCCTGAGGTCCTAGTGCCTGATGATATCACATTGCCGGAGTTTGTACTTCAGAATGCTGAATCATATGCTGAAAATGTGGCATTTGTGGAAGCCGTGAGCGGAAAGGCGTATACTTACCGTGAAGTTGTGAGAGACACGAATAGATTCGCTAAGGCCTTGAGCTCTCTGAGGTTGAGGAAGGGGCAGGTGGTTCTTGTTGTTCTACCCAACGTTGCAGAATATGCCATTGTTGCTTTAGGGATAATGGCTGCTGGAGGTGTGTTTTCTGGTGTGAATCCGGCAGCTCACATATCAGAAATCAAAAAGCAGGTGGAGGTAGCAGACGCCAAACTCGTTGTCACAAACAGTGCAAACTTTGAAAAGGTAAAGGAATTAAAGCTACCAGTGATCGTATTGGGGGAGGAACTGATTGAAGGTTCGATGAACTGGCATAAACTGCTCGAAGCTGCGGACCGTGCAGGCAACAATTTTGTTAAAGAAGATATCAAGCAGACTGATTTATGTGCCCTTCCTTTCTCATCAGGCACCACAGGAGTTTCCAAAGGTGTAATGCTAACTCATCGAAATCTAGTGGCTAACTTGTGTTCTACGCTCTCTGGTGTGCCGCAAGAAATGGAGGGCAAGGTCACGACGTTAGGCCTCATTCCGTTCTTCCATATTTATGGAATTACTGGAATATGTTGTGCCACACTTAGAAACAAGGGAAAAGTTGTGGTGATGGGAAGATTTGATCTCAGGACCTTTATTAATGCTCTGATAACACAAGAGGTCACATTTGCTCCAATTGTTCCTCCTATCATCTTGGCTTTGGTTAAGAACCCTATTGTGGAGGAATTTGATCTTAGCGCTCTCAAACTTCAAGCTATCATGACTGCAGCTGCTCCGCTCGCACCGGAACTTCAAACTGCCTTCGAGAAAAAGTTCCCAGGTGTGGATGTTCAAGAGGCATATGGACTAACCGAGCACAGCTGCATCACTCTCAACTATGGAAGTATAGGCAAAGAGAATCTCACTGCAAGGAAGAACACAGTTGGCCGTATTCTTCCTAATCTAGAAGTCAAATTCATCGACCCTGACAGCGGCAGATCTCTGCCAAAGAATACTCCAGGTGAAGTCTGTGTAAGAAGCCAGTGTGTGATGCAAGGCTACTACAAAAATGAAGAGGAGACTTCAAGGACCATTGACAACAAAGGCTGGATGCACACGGGCGACATTGGATACATTGATGACGATGGCGATGTGTTTATTGTGGATCGTATTAAAGAGTTGATTAAGTACAAAGGCTTTCAAGTTGCTCCAGCTGAGTTAGAGGCAATCCTCCTTACTCATCCCTCCATTGAAGATGCAGCTGTGGTGCCGCTGCCAGATGAAGAAGCTGGTGAGATCCCAGCAGCAAGCGTCGTGATCGCTCCAAATTCAAAAGAAACTGAAGATGAAATTATAAAATACGTTGCCTCAAACGTTGCACATTACAAGAAAGTTAGGCTCGTTCATTTTGTGGACACTATCCCGAAATCGCCTTCTGGGAAAGTAATGAGAAGGTTGATCAAAGAGAAGATGATCGAAAAGATTCGAGCTGAGTCCAGCTCTTGA 1680 45.18 MPAANNNPDMATCIRDSVEDEEHIFRSQLPEVLVPDDITLPEFVLQNAESYAENVAFVEAVSGKAYTYREVVRDTNRFAKALSSLRLRKGQVVLVVLPNVAEYAIVALGIMAAGGVFSGVNPAAHISEIKKQVEVADAKLVVTNSANFEKVKELKLPVIVLGEELIEGSMNWHKLLEAADRAGNNFVKEDIKQTDLCALPFSSGTTGVSKGVMLTHRNLVANLCSTLSGVPQEMEGKVTTLGLIPFFHIYGITGICCATLRNKGKVVVMGRFDLRTFINALITQEVTFAPIVPPIILALVKNPIVEEFDLSALKLQAIMTAAAPLAPELQTAFEKKFPGVDVQEAYGLTEHSCITLNYGSIGKENLTARKNTVGRILPNLEVKFIDPDSGRSLPKNTPGEVCVRSQCVMQGYYKNEEETSRTIDNKGWMHTGDIGYIDDDGDVFIVDRIKELIKYKGFQVAPAELEAILLTHPSIEDAAVVPLPDEEAGEIPAASVVIAPNSKETEDEIIKYVASNVAHYKKVRLVHFVDTIPKSPSGKVMRRLIKEKMIEKIRAESSS 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 318236 320505 + Lag0039838.1 Lac13g0042 591198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0042 559 CDD 4CL 34 543 - -
Lac13g0042 559 FunFam 4-coumarate--CoA ligase 2 451 552 - -
Lac13g0042 559 Pfam AMP-binding enzyme 46 413 IPR000873 -
Lac13g0042 559 Pfam AMP-binding enzyme C-terminal domain 464 539 IPR025110 -
Lac13g0042 559 ProSitePatterns Putative AMP-binding domain signature. 199 210 IPR020845 -
Lac13g0042 559 SUPERFAMILY Acetyl-CoA synthetase-like 24 552 - -
Lac13g0042 559 Gene3D - 22 450 IPR042099 -
Lac13g0042 559 FunFam Long-chain-fatty-acid--CoA ligase FadD 26 450 - -
Lac13g0042 559 Gene3D - 451 553 IPR045851 -
Lac13g0042 559 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 20 545 - GO:0004467(PANTHER)|GO:0016405(PANTHER)|GO:0046949(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0042 Lac-Chr13:318236 Lac4g2710 Lac-Chr4:46053276 1.90E-109 dispersed
Lac13g0042 Lac-Chr13:318236 Lac11g0573 Lac-Chr11:5816331 1.20E-114 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0042 K01904 - csv:101220731 1000.73