Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac13g0050 ATGATTGAAACGGAGTTTAAAGGAGAGCCACATATTGAGATTATTCCAGGTAAGCAGAAACGAGCCGAGGTGGACGTGGCGGATATCAGATTCTCTATGCCACGTGGCAGTGAAGTAGCCAATTACACCATTCCCTCTCCTATCCATTTAGATAAGCCACTGCGTACATTAACAAATTCCCAGAAGAATGGCTGCCCCAAGGCTTGTAGTTTCGTCACCGGAAAGAAGCTGAGGCTGAGAAAGTACACGGCAGCTGCCGTTGCTCCTCGATCAGCTCCGGTGTGTGCCGCGGCTGACCCCGACAGACCCCTCTGGTTCCCCGGCAGCACCCCTCCTCCATGGCTCGACGGCAGCCTCCCCGGTGACTTTGGCTTCGACCCTCTTGGTCTCGCTTCTGATCCGGAGAGCCTGAGATGGAACCAGCAGGCGGAGCTGGTGCACTGCCGGTGGGCAATGTTGGGCGCCGCCGGAATTTTCATCCCGGAATTCTTGACAAAGATCGGAATTTTGAACACTCCGTCGTGGTACTCCGCCGGAGAATTGGAATACTTCACCGACACCACCACCCTCTTCATCGTCGAACTCATCTTCATCGGTTGGGCCGAGGGTAGACGGTGGGCCGACATCCTCAAACCCGGCTGCGTCAACACCGACCCGATCTTCCCCAACAACAAGCTCACCGGAACCGACGTCGGGTACCCGGGCGGGCTGTGGTTCGACCCGCTTGGGTGGGGCAGCGGGTCACCCGAAAAGATCAAGGAATTGAGAACGAAAGAGATCAAGAACGGGCGGCTGGCCATGTTGGCCGTGATGGGCGCGTGGTTCCAACACATCTACACCGGCACCGGCCCCATCGACAATCTTTTCGCTCACCTTGCCGATCCCGGCCACGCCACTGTCTTCGCCAATATTACAGTAGTGACAGAGCGGAGGAGAAATCGGGCATCAGGAGGAAGAGGGAGGATAGTTGGTTCGGCGGACGGAGATTTGTGCGGGAATGGGGCGGCCGGTGCCGGAGCCGCCGCAGCTGCTGCAGAACATGCGGCCGGAGCCGGAGCAGGTCCGGCAGCCGATGTCGCCGTCGGACCAGCGGGAGCAAAGGCAGGGGACTCGGCCGGTGCCGTTGCAGGAGGGGCAGCGGGGGAAGGAGCCGGCCATGGGCTTTTGGTCCATGACGGATTTGACGAGAACGGCGCCGGCGAGGACGCTGAGGCCGGTGGCGAGCTGGGTGAGGACGATCGGAACCATGGCTGA 1254 59.81 MIETEFKGEPHIEIIPGKQKRAEVDVADIRFSMPRGSEVANYTIPSPIHLDKPLRTLTNSQKNGCPKACSFVTGKKLRLRKYTAAAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYSAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFANITVVTERRRNRASGGRGRIVGSADGDLCGNGAAGAGAAAAAAEHAAGAGAGPAADVAVGPAGAKAGDSAGAVAGGAAGEGAGHGLLVHDGFDENGAGEDAEAGGELGEDDRNHG 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 357170 361973 - Lag0039846.1 Lac13g0050 591206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac13g0050 417 Gene3D Chlorophyll a/b binding protein domain 112 297 - -
Lac13g0050 417 MobiDBLite consensus disorder prediction 385 417 - -
Lac13g0050 417 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 79 303 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Lac13g0050 417 FunFam Chlorophyll a-b binding protein, chloroplastic 112 297 - -
Lac13g0050 417 Pfam Chlorophyll A-B binding protein 111 277 IPR022796 -
Lac13g0050 417 SUPERFAMILY Chlorophyll a-b binding protein 98 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0050 Lac-Chr13:357170 Lac3g0610 Lac-Chr3:4737376 1.90E-61 dispersed
Lac13g0050 Lac-Chr13:357170 Lac10g0087 Lac-Chr10:677428 5.00E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac13g0050 K08908 - csv:101214055 494.197