Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac13g0055 | ATGAAGCTCCTTATTCTCGCCACCCTCACCATCTCACTCCTCTTCCCTTTCAGCCTCCTCAACTTCCTCTTTTGCTCTCTCCTCGCCCTCTCCCTCAACTTCTGGCTCATCCCCGGCGGCTTTGCATGGCGCAACCACCACCACTCCTCCGCCAACCTCCCTGGCCCCTCTGGCTGGCCGCTCCTCGGAACACTTCCGCAAATGGGGCCGCTCGCTCATCGGAATCTTGCTGCCTTTGCTCACTCCTTCAAAGCCACGCGCCTCATGTCCTTCAGCTTGGGTGCCAACCGAGCCATCATAAGCAGCCACCCCGATACGGCCAAGCAGATTCTCTGTGGCTCGGCTTTCTCCGACCGGCCGGTCAAGCAATCGGCTCGGCTCATGATGTTCGAGCGAGCCATTGGCTTTGCTCCCAACGGGGTCTATTGGCGCAACCTTCGGCGAATTGCTGCAAACCACATGTTTTCTCCACGGAGAATCTCCGACCTGGAGGGGCTCCGAAGGGAGGTGGTGAGAGAAATGACGGGGGAGGTGTCGGAGAATATGGTGACGGAGGGGGTGGTGAGGCTGAGAGAGGTGCTGCAGAAGCATTCGTTGAAGAACATAATAGAAAGTGTGTTTGGAAGTGGTTTGGGAATGGGAAGGAAGGAGGAGCTGAGTGATATGGTGAGAGAAGGGTATGAATTGATAGCGATGTTCAATTGGGAAGATTATTTTCCAGTGAGCTTTTTGGATTTTGGTGGAGTGAGGAGGAAGTGCCATGAATTGGCGAGGAAGGTTAATGTGGTAGTTGGTCAGATTGTTGAAGAGAGAAAAAGAGAAAACAATGAGTTCAATAATGACTTTCTTAGTACTTTGCTAACTTTGCCAAAGGAGGATCAGTTAAATGATTCAGATATGGTGGCTGTTTTATGGGAAATGATATTTCGTGGAACCGATACCATAGCAATACTTGTAGAATGGATCATGGCTAGAATGATACTACACCCAGAGATCCAAGCCAAAGCTCAAAACGAGATCGACACGTGCGTAGGGAGCAACAGGCACGTGCGAGATTCCGACATTCCCAATCTTCCTTACCTCCAAGCCATAGTGAAGGAAGTTCTTCGTCTACACCCTCCAGGCCCATTGCTCTCGTGGGCCCGTTTGGCGATCCACGATGTCCACGTGGACAAGATCTTAATCCCAGCTGGCACCACGGCAATGGTCAACATGTGGGCCATAGCCCACGACCCTTCGATTTGGAAAGACTCGTGGACATTTCGGCCCGAGCGGTTCATAGAAAACGACATGTCGATCATGGGCTCGGACCTGAGACTGGCGCCGTTCGGGGCTGGGCGAAGGGCGTGCCCGGGAAGGGCCTTGGGTTTAGCCACTGTGCACCTATGGCTAGCCACTTTTCTCCAACAGTTCAAATGGCTTCCATGTTCGACAAAGTCGGTTAATTTGTCGGAATGTTTGAAGCTATCCCTTGAAATGAAGAAACCTTTGCATTGTCGTGTGGTTAGTAGGTGA | 1515 | 51.95 | MKLLILATLTISLLFPFSLLNFLFCSLLALSLNFWLIPGGFAWRNHHHSSANLPGPSGWPLLGTLPQMGPLAHRNLAAFAHSFKATRLMSFSLGANRAIISSHPDTAKQILCGSAFSDRPVKQSARLMMFERAIGFAPNGVYWRNLRRIAANHMFSPRRISDLEGLRREVVREMTGEVSENMVTEGVVRLREVLQKHSLKNIIESVFGSGLGMGRKEELSDMVREGYELIAMFNWEDYFPVSFLDFGGVRRKCHELARKVNVVVGQIVEERKRENNEFNNDFLSTLLTLPKEDQLNDSDMVAVLWEMIFRGTDTIAILVEWIMARMILHPEIQAKAQNEIDTCVGSNRHVRDSDIPNLPYLQAIVKEVLRLHPPGPLLSWARLAIHDVHVDKILIPAGTTAMVNMWAIAHDPSIWKDSWTFRPERFIENDMSIMGSDLRLAPFGAGRRACPGRALGLATVHLWLATFLQQFKWLPCSTKSVNLSECLKLSLEMKKPLHCRVVSR | 504 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 387837 | 392202 | - | Lag0039851.1 | Lac13g0055 | 591211 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac13g0055 | 504 | PANTHER | CYTOCHROME P450 78A7-RELATED | 17 | 501 | IPR051996 | - | |
| Lac13g0055 | 504 | Gene3D | Cytochrome P450 | 42 | 503 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0055 | 504 | Pfam | Cytochrome P450 | 54 | 495 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0055 | 504 | FunFam | Cytochrome P450 78A5 | 45 | 504 | - | - | |
| Lac13g0055 | 504 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 443 | 452 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac13g0055 | 504 | SUPERFAMILY | Cytochrome P450 | 54 | 504 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0055 | 504 | PRINTS | P450 superfamily signature | 450 | 461 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0055 | 504 | PRINTS | P450 superfamily signature | 310 | 327 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0055 | 504 | PRINTS | P450 superfamily signature | 363 | 374 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0055 | 504 | PRINTS | P450 superfamily signature | 441 | 450 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0055 | 504 | PRINTS | E-class P450 group I signature | 362 | 380 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0055 | 504 | PRINTS | E-class P450 group I signature | 319 | 345 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0055 | 504 | PRINTS | E-class P450 group I signature | 440 | 450 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0055 | 504 | PRINTS | E-class P450 group I signature | 450 | 473 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0055 | 504 | PRINTS | E-class P450 group I signature | 404 | 428 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac13g0055 | 504 | PRINTS | E-class P450 group I signature | 299 | 316 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g0055 | Lac-Chr13:387837 | Lac6g0806 | Lac-Chr6:6920298 | 1.20E-155 | dispersed | |
| Lac13g0055 | Lac-Chr13:387837 | Lac12g1270 | Lac-Chr12:18458668 | 9.40E-132 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac13g0055 | - | - | - | 0.0 |