Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac13g0058 | ATGTTTGGCCCATCTTTCCGCCAGAACTGCGATGTTATAAACAATGCGCACTTTGCCAAAAAAGATGCTCACACTTACTGCAAGAATCCAAGCTCTCTTGTTACAGTGCAGGTCATGGCCGACGATTTCCCCGATAAGAACATCCTCCAGAGCACTGCTCTTCTCAAGTATATACTGGAAGCCAACGCCTATCCAAGAGAGCATGAACAGTTGAAGGAACTCAGAGAAACCACCTTCGAAAAGTTCGACAAGTCCGAGAGCGTGATGAATGTACCGGCGGATCAAGGATTGTTTCTATCGATGCTTTTGAAACTGATGAACGCAAAGAAAACTATAGAGATCGGCGTATTCACTGGCTATTCTCTCCTCACCACTGCGCTAGCACTACCCGCTGAGAGCCAGATAACAGCCATTGATATAAATAGAGAATCATTCGAAATTGGTTTGCCATTTATCAAGAAGGCAGGAGTTGATCATAAAATCAATTTTGTGGAATCTCAAGCATTGGTTGTCCTGAATGACCTCCTCAGTGATGGCAAAGAAGGAGAGTTTGATTTTGCATTCGTGGATGCTAAGAAGTCAGAGTACATTAAATATCACGAGTTGCTTATAAAATTAGTGAAGGTTGGTGGAGTAATTGCCTATGATAACACCTTGTGGTATGGAACGGTAACGCTGAGCGACGATGTTGTCCATGAAGATTTGAAAGATAATACAATTCATATACGAGAGCTTAATGCTTTTCTAGTCAATGACTCACGTGTGGAGATAGCTCTCCTCTCCATTGGAGATGGCCTCACTCTATGCAGGCGTATTGAATAG | 822 | 42.94 | MFGPSFRQNCDVINNAHFAKKDAHTYCKNPSSLVTVQVMADDFPDKNILQSTALLKYILEANAYPREHEQLKELRETTFEKFDKSESVMNVPADQGLFLSMLLKLMNAKKTIEIGVFTGYSLLTTALALPAESQITAIDINRESFEIGLPFIKKAGVDHKINFVESQALVVLNDLLSDGKEGEFDFAFVDAKKSEYIKYHELLIKLVKVGGVIAYDNTLWYGTVTLSDDVVHEDLKDNTIHIRELNAFLVNDSRVEIALLSIGDGLTLCRRIE | 273 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 410730 | 414971 | - | Lag0039854.1 | Lac13g0058 | 591214 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac13g0058 | 273 | PANTHER | O-METHYLTRANSFERASE-RELATED | 45 | 272 | IPR050362 | GO:0008757(PANTHER) | |
| Lac13g0058 | 273 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 47 | 272 | IPR002935 | GO:0008171(InterPro) | |
| Lac13g0058 | 273 | Pfam | O-methyltransferase | 63 | 272 | IPR002935 | GO:0008171(InterPro) | |
| Lac13g0058 | 273 | Gene3D | Vaccinia Virus protein VP39 | 37 | 273 | IPR029063 | - | |
| Lac13g0058 | 273 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 55 | 271 | IPR029063 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac13g0058 | Lac-Chr13:410730 | Lac4g1636 | Lac-Chr4:35063214 | 5.00E-63 | dispersed | |
| Lac13g0058 | Lac-Chr13:410730 | Lac2g1554 | Lac-Chr2:13557880 | 4.90E-103 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac13g0058 | K00588 | - | csv:101212121 | 366.696 |